mRNA_5995 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348970
Unique NamemRNA_5995
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: A0A835YVR0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVR0_9STRA)

HSP 1 Score: 409 bits (1050), Expect = 6.930e-144
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
Query:    1 MTEAEVSLTGDRLEVMWELELDGESVRKWWPCTLDRRGDGTLTEAGQHVFALTYDAFGEFDVCTRRVTFQAPHCLHDIEEGVGMRFRREGEQLPGDEEEEEEGXXXXXGDELVAPGDHIVDLDELVGQDGGSDQPLLAGMQHLPMVQQQNIALAMRGMMDAFKEKLREHMSAKPSGSEDADVVTRDDVRTILEDLGRQRHTQEIADGA 624
            MTEAEVSLTGDRLEVMWELELDGESVRKWWPCTLDRRGDGTLTEAGQHVFALTYDAFGEFDVCTRRVTFQAPHCLHDIEEGVGMRFRREGEQLPGDEEEEEEGXXXXXGDELVAPGDHIVDLDELVGQDGGSDQPLLAGMQHLPMVQQQNIALAMRGMMDAFKEKLREHMSAKPSGSEDADVVTRDDVRTILEDLGRQRHTQEIADGA
Sbjct:    1 MTEAEVSLTGDRLEVMWELELDGESVRKWWPCTLDRRGDGTLTEAGQHVFALTYDAFGEFDVCTRRVTFQAPHCLHDIEEGVGMRFRREGEQLPGDEEEEEEGXXXXXGDELVAPGDHIVDLDELVGQDGGSDQPLLAGMQHLPMVQQQNIALAMRGMMDAFKEKLREHMSAKPSGSEDADVVTRDDVRTILEDLGRQRHTQEIADGA 208          
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: A0A835YZF0_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF0_9STRA)

HSP 1 Score: 565 bits (1456), Expect = 4.150e-203
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1
Query:    1 MSLSEDQHAMIQSTLRQLQEVPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDFMQTLPACVHLNHVTEQTEA 831
            MSLSEDQHAMIQSTLRQLQEVPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDFMQTLPACVHLNHVTEQTEA
Sbjct:    1 MSLSEDQHAMIQSTLRQLQEVPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDFMQTLPACVHLNHVTEQTEA 277          
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: UPI0010A415CC (phosphatidylinositol transfer protein 3-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A415CC)

HSP 1 Score: 82.8 bits (203), Expect = 2.530e-14
Identity = 63/223 (28.25%), Postives = 108/223 (48.43%), Query Frame = 1
Query:  106 DEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDF 774
            DE++  R+L A  W      K  ++ ++ TL+WR   K  ++  E + + A      TG IY   +       +++ R +R + +E+ +  I+Y+VY +E A+L +P EQ  +  + + F    G +     +   RE  +VL  HYP RL    + NP   F   +++V+PLLE  T NK+ FV      N+K+      +    D+  LE  +GG+   +F
Sbjct:   49 DESIS-RHLRARNWNV----KKATKMLKQTLKWRAAYKPEEIRWEEIANEAE-----TGKIYRSNYTDKNGRTVLVMRPSR-QNSESIKGQIKYLVYCMENAILNLPAEQEQMV-WLIDFQ---GFSLSNISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFFKMVKPLLEPKTYNKVKFVYSDDH-NTKK-----IMEDLFDMDRLESSFGGNNNSEF 250          
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: A0A0L0DPN5_THETB (Random slug protein 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DPN5_THETB)

HSP 1 Score: 83.2 bits (204), Expect = 3.100e-14
Identity = 66/240 (27.50%), Postives = 111/240 (46.25%), Query Frame = 1
Query:   64 PVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFI---EYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDF 774
            PVDL +   ++F  D   C RYL A G+     ++  ++ +  TL WR   K  ++  E +    L+     G +Y+         P+V  +     G + T D I   +Y+VY LE+AL  +        ++ + F      AG M  +   ++  +VL  HYP RL ++++ N    F + W  VRP ++ NT  K+ F+    +P          +A+ I+ S LEVDYGG   +++
Sbjct:  178 PVDLSDAKVLAFATDATYC-RYLRARGYS----AEKAAKMLVGTLVWRAEYKPEEITLEEVWEE-LENE---GKMYLSAHKDREGRPVVYMK----PGHDNTTDRIVKVKYLVYVLEKALGSITTPGIETMTWVIDFKGYKQLAG-MKNIRVSKDTASVLQNHYPERLGKVFMCNQPWVFNIFWGAVRPFIDKNTVAKVSFLGSDYAP----------IAEVIEPSELEVDYGGKVVYNY 393          
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: A0A7S4M7N4_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M7N4_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 3.270e-14
Identity = 57/223 (25.56%), Postives = 106/223 (47.53%), Query Frame = 1
Query:  124 RYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFI---EYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVR---EAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDF 774
            RYL A  W      +     ++ TL+WR+  +   +  E +   A      TG +Y+  +      P+V+ R     G +TT+D +   +Y+V+ +E A+  +  E+  +    +L +  TG    +  +   +   E +N+L  HYP RL +  +V+P   F+  W+V++PLL+  T+ K+VFV+     + K+      +   I    LE D+GG  ++ +
Sbjct:   41 RYLRARQWNV----EQAWTMLQGTLQWRKEYQPEAITIEEIEEEA-----ATGKMYISPYQDKSQRPIVVMR----PGLDTTKDRVAKVKYLVWIVENAIKTMKPEENGVEKITLLIDF-TGVGMSLAGVDNTKVSLEVLNILQNHYPERLGKALMVSPPWIFSAFWKVIKPLLDPVTQEKLVFVK-----DKKKDA--AVVKDCIAEENLEQDFGGTSSWSY 242          
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: A0A7S2WCV0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCV0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.340e-14
Identity = 60/210 (28.57%), Postives = 99/210 (47.14%), Query Frame = 1
Query:   34 QSTLRQLQE----VPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKI 651
            QSTL+ L+E    VP    + +    P       RYL+   W     S  +++ +  T++WR +  V      T   P   +    G IYV+G D  G  P++++      G       ++ +VYNLERA+     E  A+      F  D    G +P L +V+ A  ++ RHYP R+ R+++V+ GTAF   W+ + P++   TR ++
Sbjct:  265 QSTLKALREELETVPGMSAKASSSGLPLTNENLARYLEMTDWHLHSGSASVADMVAHTVQWRLDHGVG-----TQPRPEFPSLAEGGVIYVNGHDREG-RPVLIYTPTTDTGGPVQAG-LDLLVYNLERAIA----EAEAVGLLQYAFIVDLAKIGPVPPLKSVKAAFEIMGRHYPGRVSRIFLVHGGTAFYWLWKFLEPVIPQRTRARV 463          
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: A0A137P5W3_CONC2 (CRAL/TRIO domain-containing protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P5W3_CONC2)

HSP 1 Score: 80.5 bits (197), Expect = 9.910e-14
Identity = 59/225 (26.22%), Postives = 105/225 (46.67%), Query Frame = 1
Query:  106 DEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGGDRTFDFMQ 780
            D+    RYL A  W      K +      TL+WRR  +  K+  ++++     T   TG ++++GFD   +HP++     + + T  +E  ++++V+NLE A+  +P     +  F +L +     A  +  +   +   +VL  HY  R+  +++      F+  +RVV PLL+  T+ KI FV                L+  IDL  +  D+GGD  F F++
Sbjct:   61 DDPCLKRYLRATKWNLEHSVKRLEA----TLKWRREFQPHKITLDSMM-----TEGATGKLHINGFDMQ-NHPILHLVPCK-ENTNDSEGHLKHVVFNLESAIKLLPV---GVEKFVILVDLRNISARNIVSIGDAKAVNDVLSSHYVERVKSIFLCEAPWIFSGFFRVVSPLLDPVTKEKINFVNIKHIKQETVPSGYAKLSNYIDLKYIYKDFGGDNPFTFVK 271          
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: A0A6D2K3U3_9BRAS (CRAL-TRIO domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K3U3_9BRAS)

HSP 1 Score: 80.5 bits (197), Expect = 1.290e-13
Identity = 67/226 (29.65%), Postives = 102/226 (45.13%), Query Frame = 1
Query:  109 EALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIY-VDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGG---DRTFDF 774
            +A   RYL A        +K + E    TL+WR   K  ++  E +   A      TG IY  +  D  G   LVM   ++   T++ +  I ++VY +E A+L +P++Q  +         +         +   RE  +VL  HYP RL    + NP   F   +R+V+P L+A TRNK+ FV       S  +  +  L    DL  L+V +GG   D +FDF
Sbjct:   46 DATITRYLAARNGHVNKATKMLKE----TLKWRMQYKPEEIRWEEIAREAE-----TGKIYRANCTDKHGRTVLVMKPSSQ--NTKSPKGQIRFLVYCMENAILNLPEDQEQMVWLIDFHGFNMSHIS----VKVSRETAHVLQEHYPERLGCAILYNPPKVFEPFYRMVKPFLDAKTRNKVRFV------YSDDEISKKVLEDIFDLEQLDVAFGGRNSDSSFDF 250          
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: A0A1J7H719_LUPAN (CRAL-TRIO domain-containing protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7H719_LUPAN)

HSP 1 Score: 79.0 bits (193), Expect = 2.790e-13
Identity = 51/188 (27.13%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  196 LEWRRNLKVPKLAAETLLSPA-LQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGG 756
            ++WR +  VP       +SP+ +   L  G ++V G D +     V+F    F+  ++ + F  ++VY L++   R+P  Q    +   +      ++     ++   +A+ +L  ++P RL +L++V+    F   W+V+ PL++ NTR K+VFV        + + L+ TL Q ID S L   YGG
Sbjct:   93 MKWRHSF-VPN----GFISPSEISDELSQGKMFVQGLDKNNRPITVVFAAKHFQNKDSPDTFKGFVVYALDKLCSRMPPGQEKFLAIADIKGWGYANSD----ISGYLKALTILQEYHPERLGKLFIVHAPYMFMKVWKVIYPLIDNNTRKKMVFV--------ENKNLKETLVQDIDESQLPEIYGG 263          
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: A0A2Z7CKJ7_9LAMI (Sec14 cytosolic factor-like n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CKJ7_9LAMI)

HSP 1 Score: 76.3 bits (186), Expect = 3.740e-12
Identity = 65/239 (27.20%), Postives = 115/239 (48.12%), Query Frame = 1
Query:   43 LRQLQEVPVDLFEQAGVSFPPDEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPA-LQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVLFNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGG 756
            L+  +  P+ + ++A +    D+ +  R+L A   R+    K  + +++  L+W+++  VP       +SP  +  NL    +++ G+D +G  P+V+   AR K T   E F  Y+V+ LE+   R+P       +   L      ++     LAA+     +L   YP RL +L++V+    F   W++V PL++ NTR KI+FV            L++TL   ID + L   +GG
Sbjct:   88 LKMARSNPISVVQRADI----DDLMLRRFLRA---RDLNVEKATAMFVK-YLKWKKDF-VPN----GCISPTEIAENLDHDKLFMQGYDKTG-RPIVVVFAARHKPTNVDE-FKRYVVFTLEKICARMPIGHEKFTAIADLQGWGYVNSDVRGYLAAL----TILQDCYPERLGKLFIVHVPYIFMTAWKMVYPLIDKNTRKKIIFVEDKN--------LQSTLLHDIDETQLPDTFGG 299          
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Match: A0A453GDY3_AEGTS (CRAL-TRIO domain-containing protein n=14 Tax=Triticinae TaxID=1648030 RepID=A0A453GDY3_AEGTS)

HSP 1 Score: 72.8 bits (177), Expect = 3.860e-11
Identity = 60/224 (26.79%), Postives = 95/224 (42.41%), Query Frame = 1
Query:  106 DEALCWRYLDAAGWRECVRSKPISEYIRDTLEWRRNLKVPKLAAETLLSPALQTNLCTGSIYVDGFDASGDHPLVMFRLARFKGTETTEDFIEYMVYNLERALLRVPQEQRALASFCVL-------FNCDTGDAGQMPRLAAVREAVNVLMRHYPSRLHRLYVVNPGTAFALTWRVVRPLLEANTRNKIVFVRGHGSPNSKRQCLRTTLAQTIDLSTLEVDYGG 756
            D     R+L A G      S  + +++     WRR   VP      +L+  ++T L     Y+ G D +G   ++ F    F  T     F  Y+VY  +    R+P+ Q      CV+        NCD         + A   A+ +L  +YP RL +  +++    F   W+VV+P ++ANTR+K VFV          + L  TL + ++   L   YGG
Sbjct:   64 DNLTLRRFLRARGHAVGKASAMLLKFVA----WRREA-VP---GGVMLAELVRTELSHEMAYMAGADRAGRPVMLAFPAKHFSATRDMAGFKRYVVYLFDAMCARIPRGQEKF--LCVVDLKGWGYANCD---------VRAYIAAIEILQSYYPERLGKALMIHVPYLFMKAWKVVQPFIDANTRDKFVFV--------DDKSLEETLRREMEDGQLPEMYGG 260          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348970 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YVR0_9STRA6.930e-144100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|348970 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZF0_9STRA4.150e-203100.00CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
UPI0010A415CC2.530e-1428.25phosphatidylinositol transfer protein 3-like n=1 T... [more]
A0A0L0DPN5_THETB3.100e-1427.50Random slug protein 5 n=1 Tax=Thecamonas trahens A... [more]
A0A7S4M7N4_9EUKA3.270e-1425.56Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A7S2WCV0_9STRA5.340e-1428.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A137P5W3_CONC29.910e-1426.22CRAL/TRIO domain-containing protein n=1 Tax=Conidi... [more]
A0A6D2K3U3_9BRAS1.290e-1329.65CRAL-TRIO domain-containing protein n=1 Tax=Microt... [more]
A0A1J7H719_LUPAN2.790e-1327.13CRAL-TRIO domain-containing protein n=1 Tax=Lupinu... [more]
A0A2Z7CKJ7_9LAMI3.740e-1227.20Sec14 cytosolic factor-like n=1 Tax=Dorcoceras hyg... [more]
A0A453GDY3_AEGTS3.860e-1126.79CRAL-TRIO domain-containing protein n=14 Tax=Triti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:832797..835241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348970|estExt_Genemark1.C_Ctg_330110
Max annot lvl2759|Eukaryota
EggNOG OGs2E99Q@1|root,2SFNQ@2759|Eukaryota
Evalue1.39e-12
Seed ortholog2880.D8LNF5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_004050.1
TranscriptId349292
TrackFilteredModels1
ProteinId348970
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348970gene_5995Tribonema minus UTEX_B_3156 geneContig_33 832797..835241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348970Trimin1|348970|estExt_Genemark1.C_Ctg_330110Tribonema minus UTEX_B_3156 polypeptideContig_33 832797..835192 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5995_1exon_5995_1Tribonema minus UTEX_B_3156 exonContig_33 832797..832812 +
exon_5995_2exon_5995_2Tribonema minus UTEX_B_3156 exonContig_33 833047..833414 +
exon_5995_3exon_5995_3Tribonema minus UTEX_B_3156 exonContig_33 834214..834329 +
exon_5995_4exon_5995_4Tribonema minus UTEX_B_3156 exonContig_33 835066..835241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5995CDS_5995Tribonema minus UTEX_B_3156 CDSContig_33 832797..832812 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5995UTR3_5995Tribonema minus UTEX_B_3156 three_prime_UTRContig_33 835193..835241 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5995 ID=mRNA_5995|Name=jgi.p|Trimin1|348970|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=676bp|location=Sequence derived from alignment at Contig_33:832797..835241+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGAAGCGGAAGTTTCTCTGACCGGGGACCGGCTGGAGGTGATGTG
GGAGCTGGAACTCGATGGCGAGAGCGTCCGGAAATGGTGGCCCTGCACCC
TGGACCGGAGGGGGGACGGCACTCTCACCGAGGCAGGACAGCACGTGTTC
GCCCTCACGTACGACGCCTTTGGAGAATTCGATGTGTGCACCAGGCGCGT
CACATTTCAGGCCCCCCATTGCCTGCACGACATCGAGGAAGGCGTTGGCA
TGAGGTTCAGGAGGGAGGGCGAGCAGCTGCCGGGCGACGAGGAGGAGGAG
GAGGAGGGGGAGGAGGACGAAGAGGGGGATGAGTTAGTGGCCCCCGGAGA
TCACATCGTTGATCTGGATGAGCTGGTGGGGCAGGACGGTGGCAGCGATC
AGCCCCTGTTGGCGGGCATGCAGCACCTGCCCATGGTGCAGCAGCAGAAC
ATCGCCCTTGCGATGCGCGGCATGATGGATGCCTTCAAGGAGAAGCTCAG
GGAGCACATGAGCGCCAAGCCGAGCGGCAGCGAAGACGCAGACGTGGTCA
CGCGCGACGACGTGCGCACCATCCTGGAGGACCTCGGGCGCCAACGCCAC
ACGCAGGAGATCGCAGACGGCGCGTGAGCCGCTCAGCACAGCGGCCGAGT
GCTGCTGCATTCAAGGAGAAACGACT
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protein sequence of jgi.p|Trimin1|348970

>Trimin1|348970|estExt_Genemark1.C_Ctg_330110 ID=Trimin1|348970|estExt_Genemark1.C_Ctg_330110|Name=jgi.p|Trimin1|348970|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=209bp
MTEAEVSLTGDRLEVMWELELDGESVRKWWPCTLDRRGDGTLTEAGQHVF
ALTYDAFGEFDVCTRRVTFQAPHCLHDIEEGVGMRFRREGEQLPGDEEEE
EEGEEDEEGDELVAPGDHIVDLDELVGQDGGSDQPLLAGMQHLPMVQQQN
IALAMRGMMDAFKEKLREHMSAKPSGSEDADVVTRDDVRTILEDLGRQRH
TQEIADGA*
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mRNA from alignment at Contig_33:832797..835241+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5995 ID=mRNA_5995|Name=jgi.p|Trimin1|348970|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2445bp|location=Sequence derived from alignment at Contig_33:832797..835241+ (Tribonema minus UTEX_B_3156 )
ATGACGGAAGCGGAAGGTAACGAGCAAGTGCCTCACAATGCTCAGCCGCA GCTTCAGCACCAGCAGCATGAGGCTGGTGTCAAGCGCCCTCGAGAGGTTG ACCCATCTGAGCAGCTCAGTTCCACGAAGCAGAAGACAGAGGAACCGCCT AGCGAAGCCTCGGGAGCAGCAGAGCCAGTAGAGCCTACAATCGCTGCCGT AGACACTCAGCAAGTACAGCCTACCACTCCTGCTGCTGCATTAGCTGCAG TTTCTCTGACCGGGGACCGGCTGGAGGTGATGTGGGAGCTGGAACTCGAT GGCGAGAGCGTCCGGAAATGGTGGCCCTGCACCCTGGACCGGAGGGGGGA CGGCACTCTCACCGAGGCAGGACAGCACGTGTTCGCCCTCACGTACGACG CCTTTGGAGAATTCGATGTGTGCACCAGGCGCGTCACATTTCAGGCCCCC CATTGCCTGCACGACATCGAGGAAGGCGTTGGCATGAGGTTCAGGAGGGA GGGCGAGCAGCTGCCGGGCGACGAGGAGGAGGAGGAGGAGGGGGAGGAGG ACGAAGAGGGGGATGAGTTAGTGGCCCCCGGAGATCACATCGTTGATCTG GATGAGCTGGTGGGGCAGGTATGTATACGTGCAACCTGTCACACGTACCC AAAACGCGATCGCGCATCACGATTGCCGCCTGCGTGTGGCGCTTTTGGGT GCAGGCCAATTGAGTTTCCAGGGCCTGCTTGCTGGCAAAGTGCCTGTGCT GATGATGTGGTCATGCGGGTAATTGAAGTTCACTCAAAACTTCATTCGAT GAGTGTGTGCTCCATAGTAGCCTGCGTGGCAGGCCTGTCACTCGCATCAC TCCAGCCAGGTACTAGTGATCTCGCTGAGAGCAGCTGTCAAGGCAGCTAT GCGGCTGTCACAAGTGACTTGCTGGCATTTTTTGCAGCGGCAAGGCTGAA CATGCGCAATGCTGTGAAATGCTGCTGAGCACTTGCTGCTTCACCAGGCA TGCCTCGTGCAATCACAGAGCTGCAGTGCATGCAGCATGATGTTTGTGTC TGTGCGCGCTATGTTACTTAGGTATGCAGGTTTCGATGAATCATGTCCAT AATCTATCAAAAGGGGACAGATCAGCAGGTGTTGGTGGCATTTGTTTTTT GGCATCATCCTTGTGGCATTTGGTTGCCATCATCGTCGCACGATGGTGGT GGGAGGCCCGGCTCGCGCTTGAAGAGTTAAGCTACCTACATGTTTCCGTG CACATGTACAGGCGAGGACAAACCCAAAATCAATTCAGCTGCCAAAGGTG AAAGCCGTCACACTGCCGCCGCTGCTGCTGTCACACCGCAGCTTCAACTT GAGAGCGCTTGCTGCCTCCGCTTTCCTCACAATACTCATGCCTGTCTGCT CCTTCTCTCCGGCGCAGGACGGTGGCAGCGATCAGCCCCTGTTGGCGGGC ATGCAGCACCTGCCCATGGTGCAGCAGCAGAACATCGCCCTTGCGATGCG CGGCATGATGGATGCCTTCAAGGAGAAGCTCAGGTGAGGATAGGTGGTTA CACCTGTATACCTGCGGTATAGGTGCACTGAAACATCGCCCTCGCCATAC GCGGCACGATGGATGCCTTCAAGGAGAAGTTCAGGTGAAAAGGGGCACTG CTCATTGTGTACATTGGGTATGTATGTATGTATGTATGTAACATTGTTGT CACGATGCGCGGCATGATTGATGCCTTCAAGGAGATGCTCAGGTGACAAC AGGCGGCGACCCTTGTCATGCATACGGTACAGGTATGCTACGCTACAGGC AGCGCTCTTTGTATGTTTACAGTATACCACACTGCAACATTGCCCTCACA ATGCACGCATGCATGGCATGATGGATGCCTTCAAGGAGCAGCTCAGGTGA CGAAGAGGCATTGCTCGCCGTATACATACGGAATTTGTGCACTTCAACAT TGTTGTCGCGATGCACGGCGTGATAGCTGCCTTCAAGGAGAAATCAGGTG AGAAACAGCAGTGCTCCTAGTATACATATATACAGTATATGCAGATGCAC TGCAACATCGTTGTTGCGGTGCATGGCGTTATATATTCCTTCATGTGCCT TCCAGAAACAGGTGTCGGAAAGGTAGTGCTCCTGGTATACATATGGTATA GGTACACTGCCACCGGCGGTTGGCACTCTGCATCCCTATCGCAGTTGTGC GTGCTGCAAAAAAGACTCCGTCAACAAAGTGCTCACAGAATACATGCATG CCTCCCATTCGCACCGCAGGGAGCACATGAGCGCCAAGCCGAGCGGCAGC GAAGACGCAGACGTGGTCACGCGCGACGACGTGCGCACCATCCTGGAGGA CCTCGGGCGCCAACGCCACACGCAGGAGATCGCAGACGGCGCGTGAGCCG CTCAGCACAGCGGCCGAGTGCTGCTGCATTCAAGGAGAAACGACT
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Coding sequence (CDS) from alignment at Contig_33:832797..835241+

>mRNA_5995 ID=mRNA_5995|Name=jgi.p|Trimin1|348970|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=627bp|location=Sequence derived from alignment at Contig_33:832797..835241+ (Tribonema minus UTEX_B_3156 )
ATGACGGAAGCGGAAGTTTCTCTGACCGGGGACCGGCTGGAGGTGATGTG
GGAGCTGGAACTCGATGGCGAGAGCGTCCGGAAATGGTGGCCCTGCACCC
TGGACCGGAGGGGGGACGGCACTCTCACCGAGGCAGGACAGCACGTGTTC
GCCCTCACGTACGACGCCTTTGGAGAATTCGATGTGTGCACCAGGCGCGT
CACATTTCAGGCCCCCCATTGCCTGCACGACATCGAGGAAGGCGTTGGCA
TGAGGTTCAGGAGGGAGGGCGAGCAGCTGCCGGGCGACGAGGAGGAGGAG
GAGGAGGGGGAGGAGGACGAAGAGGGGGATGAGTTAGTGGCCCCCGGAGA
TCACATCGTTGATCTGGATGAGCTGGTGGGGCAGGACGGTGGCAGCGATC
AGCCCCTGTTGGCGGGCATGCAGCACCTGCCCATGGTGCAGCAGCAGAAC
ATCGCCCTTGCGATGCGCGGCATGATGGATGCCTTCAAGGAGAAGCTCAG
GGAGCACATGAGCGCCAAGCCGAGCGGCAGCGAAGACGCAGACGTGGTCA
CGCGCGACGACGTGCGCACCATCCTGGAGGACCTCGGGCGCCAACGCCAC
ACGCAGGAGATCGCAGACGGCGCGTGA
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