Trimin1|348949|estExt_Genemark1.C_Ctg_330062 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348949
Unique NameTrimin1|348949|estExt_Genemark1.C_Ctg_330062
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length730
Homology
BLAST of jgi.p|Trimin1|348949 vs. uniprot
Match: A0A835YVN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN4_9STRA)

HSP 1 Score: 954 bits (2466), Expect = 0.000e+0
Identity = 729/729 (100.00%), Postives = 729/729 (100.00%), Query Frame = 0
Query:    1 MLPSPTQKYNYERSMYRWLMARNSEAFETCGITTKTLESAKRAREAFYGSGWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELTSLGIVRNPITKDFVLDKSAYPAAAAAAGGARSVSAYPPPARHGSAQPPXXXLPKPQPRLSLVDGLRAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWNSSSAESSPVQPATPSPPTCGFTSLPHLHGGGHGLPPRPPSSAFSIGSSVHSAQYEADAHGGGSGARAHVSPTSSTGSLHEVGIAFEASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHAASPAGGSASHSPVSDYGDGGPAPGLPPMQLSVAAXXXXXXXXXXXXSPVLGALPRLSARRGSFDDASSSGFRDAPQRSSSGSGSSAHPTNYALLALQQTLQELVQSEFSDLGAHGDSVSFKVQKTDNVAGPSSRRLHVTIEANTSPXXXXXXXWQPPQHPSPQGFEHEYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVKLEQLHSDYMPHGADAYASQAAADRPSLGPPPVCSGSGMGTTYSSHGSAETCPSDGGGAQHGGGSXXXXXXXXXXXXXXXXXXYAGAMDSTRSAQQQHASAHSNVNDVAGGNTFDALDWDELLARPW 729
            MLPSPTQKYNYERSMYRWLMARNSEAFETCGITTKTLESAKRAREAFYGSGWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELTSLGIVRNPITKDFVLDKSAYPAAAAAAGGARSVSAYPPPARHGSAQPPXXXLPKPQPRLSLVDGLRAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWNSSSAESSPVQPATPSPPTCGFTSLPHLHGGGHGLPPRPPSSAFSIGSSVHSAQYEADAHGGGSGARAHVSPTSSTGSLHEVGIAFEASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHAASPAGGSASHSPVSDYGDGGPAPGLPPMQLSVAAXXXXXXXXXXXXSPVLGALPRLSARRGSFDDASSSGFRDAPQRSSSGSGSSAHPTNYALLALQQTLQELVQSEFSDLGAHGDSVSFKVQKTDNVAGPSSRRLHVTIEANTSPXXXXXXXWQPPQHPSPQGFEHEYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVKLEQLHSDYMPHGADAYASQAAADRPSLGPPPVCSGSGMGTTYSSHGSAETCPSDGGGAQHGGGSXXXXXXXXXXXXXXXXXXYAGAMDSTRSAQQQHASAHSNVNDVAGGNTFDALDWDELLARPW
Sbjct:    1 MLPSPTQKYNYERSMYRWLMARNSEAFETCGITTKTLESAKRAREAFYGSGWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELTSLGIVRNPITKDFVLDKSAYPAAAAAAGGARSVSAYPPPARHGSAQPPXXXLPKPQPRLSLVDGLRAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWNSSSAESSPVQPATPSPPTCGFTSLPHLHGGGHGLPPRPPSSAFSIGSSVHSAQYEADAHGGGSGARAHVSPTSSTGSLHEVGIAFEASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHAASPAGGSASHSPVSDYGDGGPAPGLPPMQLSVAAXXXXXXXXXXXXSPVLGALPRLSARRGSFDDASSSGFRDAPQRSSSGSGSSAHPTNYALLALQQTLQELVQSEFSDLGAHGDSVSFKVQKTDNVAGPSSRRLHVTIEANTSPXXXXXXXWQPPQHPSPQGFEHEYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVKLEQLHSDYMPHGADAYASQAAADRPSLGPPPVCSGSGMGTTYSSHGSAETCPSDGGGAQHGGGSXXXXXXXXXXXXXXXXXXYAGAMDSTRSAQQQHASAHSNVNDVAGGNTFDALDWDELLARPW 729          
BLAST of jgi.p|Trimin1|348949 vs. uniprot
Match: A0A836C9L8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L8_9STRA)

HSP 1 Score: 143 bits (360), Expect = 9.470e-32
Identity = 70/116 (60.34%), Postives = 85/116 (73.28%), Query Frame = 0
Query:    2 LPSPTQKYNYERSMYRWLMARNSEAFETCGITTKTLESAKRAREAFYGSGWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELTSLGIVRNPITKDFVLDK 117
            LPSP QKYNYERS YRWLMAR+++ F  CGITTKTLESA RAR+AF+ SGW GAR LI+ DS GRHERTP FE II+RG+    G RFD   ++A E  +LGI  +   + +VL +
Sbjct:  334 LPSPIQKYNYERSTYRWLMARHADIFARCGITTKTLESASRARQAFHQSGWEGARMLIRADSQGRHERTPLFETIIKRGL--SKGTRFDIDTISAREQATLGITFDSTLEKYVLSQ 447          
BLAST of jgi.p|Trimin1|348949 vs. uniprot
Match: A0A6H5L3C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.470e-21
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 0
Query:    5 PTQKYNYERSMYRWLMARNSEAFETCGITTKTLESAKRAREAFYGSGWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELTSLGIVRNPITKDFVL 115
            P +KYNYERS+YRWL++R+ E FE  GITTKTLE A  AREAFY SGW GA+ L+Q     + ERT FF+ II+RG+ H    RF    + + E + LGI  +  T  + L
Sbjct:    7 PIKKYNYERSLYRWLVSRHPEPFEEHGITTKTLERAPLAREAFYRSGWLGAKVLVQNHEDNKFERTNFFDQIIERGLGH-GDTRFSVEHVKSDEQSKLGITLDSATGKYYL 116          
BLAST of jgi.p|Trimin1|348949 vs. uniprot
Match: A0A6H5JN30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN30_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.130e-19
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 0
Query:    4 SPTQKYNYERSMYRWLMARNSEAFETCGITTKTLESAKRAREAFYGSGWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELTSLGIVRN 107
            +P  K+N+ERS YRWL+ R+   FE    T + L+SA RAR+AFY  GW  A+ LI+  S G+ ERTPFF+AII+RG+R+ +  RFD A LT  E+ +LG+ R+
Sbjct:   10 TPVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIRP-SDGKFERTPFFDAIIRRGLRNST--RFDAATLTEDEIEALGMHRD 110          
BLAST of jgi.p|Trimin1|348949 vs. uniprot
Match: A0A836CGN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.390e-18
Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = 0
Query:    2 LPSPTQKYNYERSMYRWLMARNSEAFETCGITTKTLESAKRAREAFYGSGWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELTSLGI 104
            + +P +KYNYERS YRWL+AR+ + FE  G+TT  LE A  AR+AF+  GWPGA+ LI+    GR+ERT FF+ II RG+  Q   RF    LT  E  +L I
Sbjct:    1 MTTPIKKYNYERSAYRWLLARHPKQFEARGVTTTVLERAPAARKAFWTCGWPGAQLLIRC-VEGRYERTVFFDTIIARGL--QLSTRFAYPHLTPAESDALQI 100          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348949 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YVN4_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9L8_9STRA9.470e-3260.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L3C0_9PHAE3.470e-2150.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN30_9PHAE3.130e-1950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGN8_9STRA2.390e-1850.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 436..455
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 639..653
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 491..509
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 370..391
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 438..455
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 491..667
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..345
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 512..526
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:408828..412372 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348949mRNA_5948Tribonema minus UTEX_B_3156 mRNAContig_33 408730..412372 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348949|estExt_Genemark1.C_Ctg_330062 ID=Trimin1|348949|estExt_Genemark1.C_Ctg_330062|Name=jgi.p|Trimin1|348949|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=730bp
MLPSPTQKYNYERSMYRWLMARNSEAFETCGITTKTLESAKRAREAFYGS
GWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELT
SLGIVRNPITKDFVLDKSAYPAAAAAAGGARSVSAYPPPARHGSAQPPPP
PLPKPQPRLSLVDGLRAEAAAAAQQQKRSGELAPSGGGGGSGASQTGAPA
QQQQLRHDHRHQHQQPYQHHQQQQQQHWNSSSAESSPVQPATPSPPTCGF
TSLPHLHGGGHGLPPRPPSSAFSIGSSVHSAQYEADAHGGGSGARAHVSP
TSSTGSLHEVGIAFEASRRRGGAGGGASDVGGGGRSRSSSAGSTGSVAAA
NSMMALASMLAQQQAEYHAASPAGGSASHSPVSDYGDGGPAPGLPPMQLS
VAAAAAAAAAAAAAASPVLGALPRLSARRGSFDDASSSGFRDAPQRSSSG
SGSSAHPTNYALLALQQTLQELVQSEFSDLGAHGDSVSFKVQKTDNVAGP
SSRRLHVTIEANTSPPPPPRAAWQPPQHPSPQGFEHEYNNHHHQQQQQGA
PSPQHHHRSFDHERLQHHPGYQQQQPQLPPSPQFDHHGGDYHHHHHQHHH
FVKLEQLHSDYMPHGADAYASQAAADRPSLGPPPVCSGSGMGTTYSSHGS
AETCPSDGGGAQHGGGSGGGSGAMSAYRAAVAAAAYAGAMDSTRSAQQQH
ASAHSNVNDVAGGNTFDALDWDELLARPW*
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