mRNA_15556 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134867
Unique NamemRNA_15556
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134867 vs. uniprot
Match: A0A835ZE74_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE74_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.260e-19
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 LESLTELRLSNCGCAQARDLGAALARNRGLRTLSLPRNALRDAG 132
            LESLTELRLSNCGCAQARDLGAALARNRGLRTLSLPRNALRDAG
Sbjct:    1 LESLTELRLSNCGCAQARDLGAALARNRGLRTLSLPRNALRDAG 44
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134867 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZE74_9STRA2.260e-19100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_108contigContig_108:207646..208459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134867|gw1.108.20.1
Hectar predicted targeting categoryother localisation
TranscriptId135189
TrackFilteredModels1
ProteinId134867
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134867gene_15556Tribonema minus UTEX_B_3156 geneContig_108 207646..208459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134867Trimin1|134867|gw1.108.20.1Tribonema minus UTEX_B_3156 polypeptideContig_108 207646..208459 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15556_2exon_15556_2Tribonema minus UTEX_B_3156 exonContig_108 207646..207735 -
exon_15556_1exon_15556_1Tribonema minus UTEX_B_3156 exonContig_108 208169..208459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15556CDS_15556Tribonema minus UTEX_B_3156 CDSContig_108 208169..208459 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15556 ID=mRNA_15556|Name=jgi.p|Trimin1|134867|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_108:207646..208459- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTAGAGTCGCTCACCGAGCTGAGGCTGAGCAACTGCGGGTGCGCGCAAGC
ACGCGATCTGGGCGCGGCGCTCGCGCGGAATCGCGGTCTGAGAACGCTCT
CGCTTCCGCGGAATGCGCTTCGGGACGCCGGCGCGCGTTCTCTGGCGGAC
GCGCTGGGCACGAATACGACGCTGCACGCGCTTGATGTGGCGCGCAACGG
GATAGGAGATGATGGGGCGGAAGCGTTCGCGCACGCGCTGGAGAATAACT
CAACGCTCCACACGCTGAACTTGAGCGGCAACATGATACAGGACAACGGC
GCGGCCGCCTTCATCGACGCCTTCACCGACAACATCACGCTCCAGGGGCT
CGACCTCTCGGGCAACGCCATTTCAGAGGCC
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protein sequence of jgi.p|Trimin1|134867

>Trimin1|134867|gw1.108.20.1 ID=Trimin1|134867|gw1.108.20.1|Name=jgi.p|Trimin1|134867|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
LESLTELRLSNCGCAQARDLGAALARNRGLRTLSLPRNALRDAGARSLAD
ALGTNTTLHALDVARNGIGDDGAEAFAHALENNSTLHTLNLSGNMIQDNG
AAAFIDAFTDNITLQGLDLSGNAISEA
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mRNA from alignment at Contig_108:207646..208459-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15556 ID=mRNA_15556|Name=jgi.p|Trimin1|134867|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=814bp|location=Sequence derived from alignment at Contig_108:207646..208459- (Tribonema minus UTEX_B_3156 )
TTAGAGTCGCTCACCGAGCTGAGGCTGAGCAACTGCGGGTGCGCGCAAGC
ACGCGATCTGGGCGCGGCGCTCGCGCGGAATCGCGGTCTGAGAACGCTCT
CGCTTCCGCGGAATGCGCTTCGGGACGCCGGCGCGCGTTCTCTGGCGGAC
GCGCTGGGCACGAATACGACGCTGCACGCGCTTGATGTGGCGCGCAACGG
GATAGGAGATGATGGGGCGGAAGCGTTCGCGCACGCGCTGGAGAATAACT
CAACGCTCCACACGCTGAACTTGAGCGGCAACATGATACAGGTGGGTGGG
TTTGGGTGTGAGAGCAGACTTGTGTGTGTGTGGGGGGGGGTATTTCACGG
GGGAAGTTTTGTTGTGCAAAAACAGGTCGATGCCGCACGTGTAGAATTTG
GGCAGCAACTTAATGCGAGAGGGTACATGGTACGGCTCCTGTAGACTTCT
GGGCCGTGTACTGGAGGACACGCAGGTGCAATATGCTCGCTATGGGGCGT
GACCTCTAGATCTGTGGGCCGTACACCACAGAGGCCATCACAATCGTTGC
CACGATGACGCACGTACTGAGCTCACTCCGTACTGCGCGGCATCGGCCTA
CCACAGCGCGACCGCACTAGCCCTTGCGCAGCCCTACCCGCCAGTTTTCC
TTACCATCCACTTGACATGACGCGCAACGAATGAACCATTGTGAACAACG
TCTCTCGACCGCTGCACGACGCAGGACAACGGCGCGGCCGCCTTCATCGA
CGCCTTCACCGACAACATCACGCTCCAGGGGCTCGACCTCTCGGGCAACG
CCATTTCAGAGGCC
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Coding sequence (CDS) from alignment at Contig_108:207646..208459-

>mRNA_15556 ID=mRNA_15556|Name=jgi.p|Trimin1|134867|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_108:207646..208459- (Tribonema minus UTEX_B_3156 )
TTAGAGTCGCTCACCGAGCTGAGGCTGAGCAACTGCGGGTGCGCGCAAGC
ACGCGATCTGGGCGCGGCGCTCGCGCGGAATCGCGGTCTGAGAACGCTCT
CGCTTCCGCGGAATGCGCTTCGGGACGCCGGCGCGCGTTCTCTGGCGGAC
GCGCTGGGCACGAATACGACGCTGCACGCGCTTGATGTGGCGCGCAACGG
GATAGGAGATGATGGGGCGGAAGCGTTCGCGCACGCGCTGGAGAATAACT
CAACGCTCCACACGCTGAACTTGAGCGGCAACATGATACAGGACAACGGC
GCGGCCGCCTTCATCGACGCCTTCACCGACAACATCACGCTCCAGGGGCT
CGACCTCTCGGGCAACGCCATTTCAGAGGCC
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