Trimin1|164773|e_gw1.33.48.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|164773
Unique Name	Trimin1\|164773\|e_gw1.33.48.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	95

Homology

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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: A0A836CE11_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE11_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.300e-64
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94
            VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS
Sbjct:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94

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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: Q9MG87_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Synura synuroidea TaxID=47573 RepID=Q9MG87_9STRA)

HSP 1 Score: 165 bits (418), Expect = 3.270e-49
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 0

Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94
            VLAVIFTSLQ FEY T+SF++SDG+YGS FY+ATGFHGFHV +GT F+ VC +R+Y+NHF+R HHFGFEAAAWYWHFVDVVWLFLF+ IYWWGS
Sbjct:  174 VLAVIFTSLQAFEYVTSSFTISDGVYGSTFYMATGFHGFHVFVGTCFLIVCLIRVYLNHFTREHHFGFEAAAWYWHFVDVVWLFLFITIYWWGS 267

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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: A0A348AYQ7_9EUKA (Cytochrome c oxidase subunit 3 n=1 Tax=Ophirina amphinema TaxID=2108040 RepID=A0A348AYQ7_9EUKA)

HSP 1 Score: 162 bits (410), Expect = 4.860e-48
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 0

Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94
            VLA+IFT+LQVFEY TASF +SDGIYGS FY++TGFHGFHV+IGT F+ VC LR   NHF+  HHFGFEAAAWYWHFVDVVWLFLF C+YWWG+
Sbjct:  170 VLAIIFTALQVFEYNTASFDISDGIYGSTFYMSTGFHGFHVLIGTSFLAVCLLRQLKNHFTTDHHFGFEAAAWYWHFVDVVWLFLFTCVYWWGN 263

[Close]

BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: E6ZES3_ECTSI (Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES3_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.430e-47
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 0

Query:    3 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 93
            A+ FT++Q FEY  A FSMSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C++RL++ HFSR HHFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct:  177 AIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 267

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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: G1UD76_CUTMU (Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=Cutleria TaxID=74474 RepID=G1UD76_CUTMU)

HSP 1 Score: 158 bits (399), Expect = 5.410e-47
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 0

Query:    3 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 93
            AV FT++Q FEY  A F MSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C+LRLY +HFSR  HFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct:  119 AVAFTAMQGFEYMNAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 209

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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: D2Z239_HETAK (Cytochrome c oxidase subunit 3 n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z239_HETAK)

HSP 1 Score: 159 bits (403), Expect = 6.710e-47
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 0

Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94
            VLAV+FT+LQ FEY TA FS++D +YGS FY+ TGFHGFHV IGT F+ VC++RLY++HF+R HHFGFEAAAWYWHFVDVVWLFLF+ IYWWGS
Sbjct:  178 VLAVVFTALQGFEYLTAPFSIADSVYGSTFYLTTGFHGFHVFIGTCFLTVCTVRLYLHHFTRQHHFGFEAAAWYWHFVDVVWLFLFITIYWWGS 271

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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: Q2TUF2_9PHAE (Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUF2_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 9.750e-47
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = 0

Query:    3 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 93
            AV FT+LQ FEY  A F+MSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C+LRLY +HFSR  HFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct:  177 AVAFTALQGFEYMHAPFAMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFITIYWWG 267

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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: A0A2P1G7I4_9CHLO (Cytochrome c oxidase subunit 3 n=2 Tax=Prototheca zopfii TaxID=3112 RepID=A0A2P1G7I4_9CHLO)

HSP 1 Score: 159 bits (401), Expect = 1.210e-46
Identity = 67/94 (71.28%), Postives = 83/94 (88.30%), Query Frame = 0

Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94
            VLAVIFT  Q +EY  A FS++DGIYGS F+++TGFHGFHVIIGT+F+ +C++R+Y+NHFS GHHFGFEAAAWYWH VDVVWLFLF+C+Y+WG 
Sbjct:  173 VLAVIFTGFQAYEYIEAPFSIADGIYGSTFFLSTGFHGFHVIIGTIFLAICAVRVYLNHFSSGHHFGFEAAAWYWHMVDVVWLFLFICVYYWGG 266

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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: A0A7U3S048_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7U3S048_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.550e-46
Identity = 72/94 (76.60%), Postives = 81/94 (86.17%), Query Frame = 0

Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94
            VLA+ FT LQ FEY  A F MSD +YG+ FY+ATGFHGFHVIIGTLF+ VC+LRL+ +HFSR HHFGFEAAAWYWHFVDVVWLFLF+ IYWWGS
Sbjct:  176 VLALFFTGLQAFEYLHAPFGMSDSVYGASFYMATGFHGFHVIIGTLFLFVCTLRLFSHHFSRQHHFGFEAAAWYWHFVDVVWLFLFITIYWWGS 269

[Close]

BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: A0A519UKM7_9SPHI (Cytochrome-c oxidase n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A519UKM7_9SPHI)

HSP 1 Score: 157 bits (398), Expect = 3.420e-46
Identity = 71/94 (75.53%), Postives = 82/94 (87.23%), Query Frame = 0

Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94
            VLA+IFT+LQ +EY +A F++SDGIYGS FY+ATGFHGFHVI+GT F+ VC  R+Y NHF+R HHFGFEAAAWYWHFVDVVWL LFV IYWWGS
Sbjct:  174 VLALIFTALQGYEYISAPFTISDGIYGSTFYMATGFHGFHVIVGTCFLAVCLARVYFNHFTREHHFGFEAAAWYWHFVDVVWLILFVSIYWWGS 267

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|164773 vs. uniprot

BLAST of jgi.p|Trimin1|164773 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CE11_9STRA	1.300e-64	100.00	Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema m...	[more]
Q9MG87_9STRA	3.270e-49	77.66	Cytochrome c oxidase subunit 3 n=1 Tax=Synura synu...	[more]
A0A348AYQ7_9EUKA	4.860e-48	76.60	Cytochrome c oxidase subunit 3 n=1 Tax=Ophirina am...	[more]
E6ZES3_ECTSI	2.430e-47	75.82	Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyc...	[more]
G1UD76_CUTMU	5.410e-47	76.92	Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=...	[more]
D2Z239_HETAK	6.710e-47	74.47	Cytochrome c oxidase subunit 3 n=4 Tax=Heterosigma...	[more]
Q2TUF2_9PHAE	9.750e-47	78.02	Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyce...	[more]
A0A2P1G7I4_9CHLO	1.210e-46	71.28	Cytochrome c oxidase subunit 3 n=2 Tax=Prototheca ...	[more]
A0A7U3S048_9STRA	2.550e-46	76.60	Cytochrome c oxidase subunit 3 n=1 Tax=Schizocladi...	[more]
A0A519UKM7_9SPHI	3.420e-46	75.53	Cytochrome-c oxidase n=1 Tax=Pedobacter sp. TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013833	Cytochrome c oxidase, subunit III, 4-helical bundle	GENE3D	1.20.120.80		coord: 1..94 e-value: 1.1E-35 score: 124.9
IPR000298	Cytochrome c oxidase subunit III-like	PFAM	PF00510	COX3	coord: 1..94 e-value: 2.6E-42 score: 145.4
IPR000298	Cytochrome c oxidase subunit III-like	PROSITE	PS50253	COX3	coord: 1..94 score: 24.10861
IPR024791	Cytochrome c oxidase subunit III	PANTHER	PTHR11403	CYTOCHROME C OXIDASE SUBUNIT III	coord: 1..94
None	No IPR available	PANTHER	PTHR11403:SF7	CYTOCHROME C OXIDASE SUBUNIT 3	coord: 1..94
IPR033945	Cytochrome c oxidase subunit III domain	CDD	cd01665	Cyt_c_Oxidase_III	coord: 1..92 e-value: 2.02939E-46 score: 146.892
IPR035973	Cytochrome c oxidase subunit III-like superfamily	SUPERFAMILY	81452	Cytochrome c oxidase subunit III-like	coord: 1..93

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_33	contig	Contig_33:883565..883849 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|164773	mRNA_6001	Tribonema minus UTEX_B_3156	mRNA	Contig_33 883565..883849 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|164773|e_gw1.33.48.1 ID=Trimin1|164773|e_gw1.33.48.1|Name=jgi.p|Trimin1|164773|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp
VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGV
CSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013833	Cyt_c_oxidase_su3_a-hlx
IPR000298	Cyt_c_oxidase-like_su3
IPR024791	Cyt_c/ubiquinol_Oxase_su3
IPR033945	Cyt_c_oxase_su3_dom
IPR035973	Cyt_c_oxidase_su3-like_sf