mRNA_6022 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A835Z4W2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W2_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.960e-56 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 Query: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERRA 234 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERRA Sbjct: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERRA 78
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A836CND7_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND7_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.340e-30 Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231 WA +++ +PGR AKQCRERY+NHLDP L++ PWTPEEE L+ C N WAE+ R+ PGRSYNDVKNRY L++RR Sbjct: 42 WALVARSMPGRVAKQCRERYLNHLDPKLQRGPWTPEEEQVLLRLCEGQNRQWAEICRQLPGRSYNDVKNRYNLIQRR 118
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A835YSH7_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH7_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.000e-27 Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1 Query: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231 WA+I H+PGR KQCRERY+NHLDPSL+K PWTPEE+A L + N WA++ R+ PGR NDVKNR+ L++RR Sbjct: 78 WAQICMHMPGRVGKQCRERYLNHLDPSLKKTPWTPEEDALLTELHTKMNNSWADIARQMPGRCDNDVKNRWNLIQRR 154
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.180e-25 Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRK-APWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231 W++++KH+PGR AKQCRERY+NHLDPSLRK PWT +EEA L+ C WAE+ R+ GRSYNDVKNR+ L++RR Sbjct: 1056 WSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRR 1133
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI) HSP 1 Score: 105 bits (262), Expect = 5.920e-25 Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRK-APWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231 W+++++H+PGR AKQCRERY+NHLDPSLRK PWT +EEA L+ C WAE+ R+ GRSYNDV+NR+ L++RR Sbjct: 318 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVQNRFNLIQRR 395
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI) HSP 1 Score: 103 bits (258), Expect = 3.610e-24 Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1 Query: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231 W++IS H+PGR KQCRERY+NHLDPSLR PWT EEE L++ N WAE+ R+ PGRS NDVKNR+ L+ RR Sbjct: 649 WSQISDHMPGRVGKQCRERYLNHLDPSLRHGPWTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRR 725
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE) HSP 1 Score: 103 bits (258), Expect = 3.630e-24 Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1 Query: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 231 W++IS H+PGR KQCRERY+NHLDPSLR PWT EEE L++ N WAE+ R+ PGRS NDVKNR+ L+ RR Sbjct: 1037 WSQISDHMPGRVGKQCRERYLNHLDPSLRHGPWTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRR 1113
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A836CML2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML2_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.770e-23 Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERRA 234 W +I+K LPGR AKQ R RY NHLDP L KAPWTPEE+ LV T WA + R PGRS NDVKNR++ +ER A Sbjct: 56 WKKIAKLLPGRSAKQARTRYTNHLDPRLTKAPWTPEEDQLLVETVEGTGAGWAVIARSMPGRSDNDVKNRWHTIERYA 133
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A7S1G6Z8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6Z8_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.330e-23 Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1 Query: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERRA 234 W ++ +PGR AKQCRER++N+LDP L+K PW+PEE+A LVA +E HW+E+ + PGR N VKNR+Y + R+ Sbjct: 120 WGRVAASIPGRTAKQCRERWVNNLDPQLKKTPWSPEEDAILVAKQKEIGNHWSEIAQFLPGRPDNSVKNRWYCMINRS 197
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Match: A0A1E7EVM5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVM5_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.910e-23 Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYY 216 WA+I+ HLPGR KQCRER++NHLDP L+K WT +EEA L+A WA + ++ PGRS NDVKN +Y Sbjct: 54 WAKIAAHLPGRQGKQCRERFVNHLDPELKKGEWTDDEEAILIAMHELHGNRWANISKQLPGRSDNDVKNHWY 125 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144030 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6022 ID=mRNA_6022|Name=jgi.p|Trimin1|144030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_33:1022011..1022244- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGGGCCGAGATCTCCAAACACCTCCCCGGCCGCGACGCCAAGCAGTGCCGback to top protein sequence of jgi.p|Trimin1|144030 >Trimin1|144030|gw1.33.106.1 ID=Trimin1|144030|gw1.33.106.1|Name=jgi.p|Trimin1|144030|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp WAEISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCback to top mRNA from alignment at Contig_33:1022011..1022244- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6022 ID=mRNA_6022|Name=jgi.p|Trimin1|144030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_33:1022011..1022244- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_33:1022011..1022244- >mRNA_6022 ID=mRNA_6022|Name=jgi.p|Trimin1|144030|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_33:1022011..1022244- (Tribonema minus UTEX_B_3156 )back to top |