mRNA_5900 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140939
Unique NamemRNA_5900
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|140939 vs. uniprot
Match: A0A835Z336_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z336_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.420e-46
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 213
            MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR
Sbjct:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 71
[Close]
BLAST of jgi.p|Trimin1|140939 vs. uniprot
Match: A0A482RNG8_9ARCH (PAS domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNG8_9ARCH)

HSP 1 Score: 120 bits (300), Expect = 2.380e-32
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 213
            MVYVNQ FCK TGY K EA GRNC+FLQGP+TEPEAI +IR+ LS+GQDCHV++TNYRKNG+ F NLLSM+
Sbjct:   43 MVYVNQEFCKTTGYGKEEAIGRNCRFLQGPDTEPEAIQVIRNTLSKGQDCHVKLTNYRKNGEMFQNLLSMK 113
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BLAST of jgi.p|Trimin1|140939 vs. uniprot
Match: A0A835YJF7_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJF7_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.350e-30
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 213
            M++VN AFCKVTGY+K E  GRNC+FLQGP+TEPEAI +IRS LS+GQDCHV++TNYRKNG+KF NLLSM+
Sbjct:  267 MIFVNDAFCKVTGYSKEETVGRNCRFLQGPDTEPEAIALIRSTLSQGQDCHVKLTNYRKNGEKFQNLLSMK 337
[Close]
BLAST of jgi.p|Trimin1|140939 vs. uniprot
Match: A0A835Z4M9_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M9_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.580e-30
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 213
            MVYVN AFCKVTGY++ E+ GRNC+FLQGP+TEPEAI+MIR RL +G DCHV+ITNYRKNG++F NLLSM+
Sbjct:  363 MVYVNAAFCKVTGYSREESVGRNCRFLQGPDTEPEAIEMIRQRLGKGLDCHVKITNYRKNGERFQNLLSMK 433
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BLAST of jgi.p|Trimin1|140939 vs. uniprot
Match: F0YGV8_AURAN (PAS domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGV8_AURAN)

HSP 1 Score: 109 bits (272), Expect = 2.880e-29
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 213
            MVYVN  FC+VT Y + EA GRNC+FLQGP+TEPE+I +I+  L +G+DCHV +TNYRK+GDKF NLLSMR
Sbjct:   36 MVYVNPEFCRVTEYPREEAVGRNCRFLQGPDTEPESIQVIQETLCKGEDCHVLLTNYRKSGDKFKNLLSMR 106
[Close]
BLAST of jgi.p|Trimin1|140939 vs. uniprot
Match: A0A835YT73_9STRA (PAS/PAC sensor hybrid histidine kinase putative blue light receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT73_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.690e-29
Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 213
            MVY+N  F KVTGY K EA GRNC+FLQGP+TEPE+I +IR+ LS+GQDCHV++TNYRKNGDKF NLLSM+
Sbjct:  977 MVYINSEFTKVTGYTKEEAVGRNCRFLQGPDTEPESIAVIRNTLSKGQDCHVKLTNYRKNGDKFQNLLSMK 1047
[Close]
BLAST of jgi.p|Trimin1|140939 vs. uniprot
Match: A0A126WYE1_SCYLO (Putative LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126WYE1_SCYLO)

HSP 1 Score: 115 bits (287), Expect = 3.220e-28
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 213
            MVY+N  F K TGY K EA GRNC+FLQGPETEPE+I +IR+ LS+GQDCHV++TNYRKNG+KF NLLSM+
Sbjct:  239 MVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMK 309
[Close]
BLAST of jgi.p|Trimin1|140939 vs. uniprot
Match: A0A126X2E1_9PHAE (Putative LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126X2E1_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.250e-28
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 213
            MVY+N  F K TGY K EA GRNC+FLQGPETEPE+I +IR+ LS+GQDCHV++TNYRKNG+KF NLLSM+
Sbjct:  656 MVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMK 726
[Close]
BLAST of jgi.p|Trimin1|140939 vs. uniprot
Match: D7FQX8_ECTSI (Helmchrome putative blue light receptor for phototaxis n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQX8_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.260e-28
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 213
            MVY+N  F K TGY K EA GRNC+FLQGPETEPE+I +IR+ LS+GQDCHV++TNYRKNG+KF NLLSM+
Sbjct:  974 MVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMK 1044
[Close]
BLAST of jgi.p|Trimin1|140939 vs. uniprot
Match: A0A7S4IDC3_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IDC3_9EUKA)

HSP 1 Score: 108 bits (270), Expect = 8.700e-28
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDCHVRITNYRKNGDKFTNLLSMR 213
            M +VNQ FCK TGY K E +GRNC+FLQGP+TEP+++ +I+  L RG DCHV++TNYRKNGD F NLL+MR
Sbjct:   45 MFFVNQEFCKTTGYPKHEVQGRNCRFLQGPKTEPQSVAVIQDTLRRGVDCHVKLTNYRKNGDLFENLLTMR 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140939 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z336_9STRA1.420e-46100.00PAS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A482RNG8_9ARCH2.380e-3274.65PAS domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A835YJF7_9STRA1.350e-3074.65PAS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z4M9_9STRA1.580e-3074.65PAS domain-containing protein n=1 Tax=Tribonema mi... [more]
F0YGV8_AURAN2.880e-2967.61PAS domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A835YT73_9STRA3.690e-2973.24PAS/PAC sensor hybrid histidine kinase putative bl... [more]
A0A126WYE1_SCYLO3.220e-2871.83Putative LOV domain-containing protein n=2 Tax=Scy... [more]
A0A126X2E1_9PHAE3.250e-2871.83Putative LOV domain-containing protein n=2 Tax=Scy... [more]
D7FQX8_ECTSI3.260e-2871.83Helmchrome putative blue light receptor for photot... [more]
A0A7S4IDC3_9EUKA8.700e-2864.79Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:127265..127897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140939|gw1.33.87.1
BRITEko00000,ko01000,ko01001
KEGG koko:K20715
EC2.7.11.1
DescriptionPAS domain
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2202@1|root,2S3IW@2759|Eukaryota
Evalue5.34e-29
Seed ortholog2880.D7FQX8
Hectar predicted targeting categoryother localisation
TranscriptId141261
TrackFilteredModels1
ProteinId140939
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140939gene_5900Tribonema minus UTEX_B_3156 geneContig_33 127265..127897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140939Trimin1|140939|gw1.33.87.1Tribonema minus UTEX_B_3156 polypeptideContig_33 127265..127897 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5900_2exon_5900_2Tribonema minus UTEX_B_3156 exonContig_33 127265..127403 -
exon_5900_1exon_5900_1Tribonema minus UTEX_B_3156 exonContig_33 127824..127897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5900CDS_5900Tribonema minus UTEX_B_3156 CDSContig_33 127824..127897 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5900 ID=mRNA_5900|Name=jgi.p|Trimin1|140939|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_33:127265..127897- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTACGTGAATCAGGCCTTCTGCAAGGTCACGGGGTACGCCAAGGG
GGAGGCGGAGGGGCGCAACTGCAAATTTCTGCAGGGTCCAGAGACGGAGC
CGGAGGCCATTGACATGATACGCAGCCGCCTGAGCCGTGGTCAGGACTGC
CATGTGCGCATCACCAACTACCGCAAGAACGGCGACAAGTTCACCAACCT
GCTCTCCATGCGG
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protein sequence of jgi.p|Trimin1|140939

>Trimin1|140939|gw1.33.87.1 ID=Trimin1|140939|gw1.33.87.1|Name=jgi.p|Trimin1|140939|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
MVYVNQAFCKVTGYAKGEAEGRNCKFLQGPETEPEAIDMIRSRLSRGQDC
HVRITNYRKNGDKFTNLLSMR
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mRNA from alignment at Contig_33:127265..127897-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5900 ID=mRNA_5900|Name=jgi.p|Trimin1|140939|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=633bp|location=Sequence derived from alignment at Contig_33:127265..127897- (Tribonema minus UTEX_B_3156 )
ATGGTGTACGTGAATCAGGCCTTCTGCAAGGTCACGGGGTACGCCAAGGG
GGAGGCGGAGGGGCGCAACTGCAAGTGAGTCTCAGGGTTGAAGTTGCTGA
CTTGTGTGTGATGTATCCAATGTGACAGACCCAGCAGACAGCTATGTGGC
TCTCGTTAAGGTCGCACTTGTTGACTGTGAAGTTGAACATATTTATAATG
AATGTATGTACGCAATCGCGCATGCATGTCAGACAGCAGACACAGCAATC
CTGTGGAGTATGCAAGGCATTCAATGCAGCGCTACTAACCCTGCCTGACC
AGTAAAGAGGGATAAAGCGTGTGACAGTGCTACAGTAGCTTCAGTACCGT
CAGCCTCAACTGGGGCACTCCCTCTTGATGCTTTGTTACAGTGCTGCATT
GCTGCATTTTGCCAGCTCATTGCTCTTGCCCTTTCTGGCTTGAGATCTTG
CCACCACCCACCCTTACATTTGCTCCTACCGTCTGCTATCACAGATTTCT
GCAGGGTCCAGAGACGGAGCCGGAGGCCATTGACATGATACGCAGCCGCC
TGAGCCGTGGTCAGGACTGCCATGTGCGCATCACCAACTACCGCAAGAAC
GGCGACAAGTTCACCAACCTGCTCTCCATGCGG
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Coding sequence (CDS) from alignment at Contig_33:127265..127897-

>mRNA_5900 ID=mRNA_5900|Name=jgi.p|Trimin1|140939|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_33:127265..127897- (Tribonema minus UTEX_B_3156 )
ATGGTGTACGTGAATCAGGCCTTCTGCAAGGTCACGGGGTACGCCAAGGG
GGAGGCGGAGGGGCGCAACTGCAAATTTCTGCAGGGTCCAGAGACGGAGC
CGGAGGCCATTGACATGATACGCAGCCGCCTGAGCCGTGGTCAGGACTGC
CATGTGCGCATCACCAACTACCGCAAGAACGGCGACAAGTTCACCAACCT
GCTCTCCATGCGG
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