Trimin1|348865|estExt_Genemark1.C_Ctg_320070 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348865
Unique Name	Trimin1\|348865\|estExt_Genemark1.C_Ctg_320070
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	341

Homology

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A835YVG2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVG2_9STRA)

HSP 1 Score: 555 bits (1431), Expect = 7.690e-198
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0

Query:    1 MGDEPVREHAAEVEGGSGDEPDQAQEAGDQGEHEAAAMEGLRVSDDYADEDDEDGDDNYSGEPSAKRNHNNHSRDGDQGPHYSSPSSNGGGAKRPSDQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKAQALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQELSDKNAISNVAPAGGKRPRSPAMGQYVAPFNSLGGGXXXXXXXXGGPRGGGMHMMVPGGGXXMNXXXXXXXXXXXXXXMMPFGGPVRGLSPDHSAMLQSAAMYLAQYNLPPAPGMLNIAYREQLEDSQREVQXXXXXXXXXXXXXXXXXXRRHPGGMGMRR 340
            MGDEPVREHAAEVEGGSGDEPDQAQEAGDQGEHEAAAMEGLRVSDDYADEDDEDGDDNYSGEPSAKRNHNNHSRDGDQGPHYSSPSSNGGGAKRPSDQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKAQALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQELSDKNAISNVAPAGGKRPRSPAMGQYVAPFNSLGGGXXXXXXXXGGPRGGGMHMMVPGGGXXMNXXXXXXXXXXXXXXMMPFGGPVRGLSPDHSAMLQSAAMYLAQYNLPPAPGMLNIAYREQLEDSQREVQXXXXXXXXXXXXXXXXXXRRHPGGMGMRR
Sbjct:    1 MGDEPVREHAAEVEGGSGDEPDQAQEAGDQGEHEAAAMEGLRVSDDYADEDDEDGDDNYSGEPSAKRNHNNHSRDGDQGPHYSSPSSNGGGAKRPSDQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKAQALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQELSDKNAISNVAPAGGKRPRSPAMGQYVAPFNSLGGGXXXXXXXXGGPRGGGMHMMVPGGGXXMNXXXXXXXXXXXXXXMMPFGGPVRGLSPDHSAMLQSAAMYLAQYNLPPAPGMLNIAYREQLEDSQREVQXXXXXXXXXXXXXXXXXXRRHPGGMGMRR 340

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: UPI001652677A (polypyrimidine tract-binding protein 2-like n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI001652677A)

HSP 1 Score: 63.9 bits (154), Expect = 1.200e-7
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 0

Query:   97 DQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 180
            D   NPPSR++H+R LPG A +TD+  +  S   +   ++ K   QA LE + +A A  +VSYF  NPA +    +++ FS  +EL
Sbjct:  148 DGTINPPSRVVHIRSLPGEAGETDIVQLGMSFGKMTNVLVLKQKNQAFLEFQDEASAISMVSYFQANPAQVRFKPVFVQFSNHKEL 233

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A0B7A7G7_9EUPU (RRM domain-containing protein (Fragment) n=3 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A7G7_9EUPU)

HSP 1 Score: 60.8 bits (146), Expect = 1.220e-7
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 0

Query:   82 YSSPSSNGGGAKRPSDQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 180
            + SPS      K   D  ANP SR++H+R +PG A +TD+  +  S   +   ++ K   QA LE + +A A  +V+YF  NPA +    +++ FS  +EL
Sbjct:   55 HQSPSELTDAKKAKLDGTANPASRVVHIRSMPGEAGETDVVQLGMSFGKMTNVLVLKQKNQAFLEFQDEASAVAMVAYFQTNPAQVRLKPVFVQFSNHKEL 155

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: UPI00065B6221 (polypyrimidine tract-binding protein 2 isoform X1 n=4 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B6221)

HSP 1 Score: 63.9 bits (154), Expect = 1.640e-7
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 0

Query:   97 DQNANPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 180
            D   NPPSR++H+R LPG A +TD+  +  S   +   ++ K   QA LE + +A A  +VSYF  NPA +    +++ FS  +EL
Sbjct:  148 DGTINPPSRVVHIRSLPGEAGETDIVQLGMSFGKMTNVLVLKQKNQAFLEFQDEASAISMVSYFQANPAQVRFKPVFVQFSNHKEL 233

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A1X7UYZ1_AMPQE (Uncharacterized protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UYZ1_AMPQE)

HSP 1 Score: 62.0 bits (149), Expect = 5.700e-7
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 0

Query:   92 AKRPSDQNANP-PSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMF--KAQALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQELSDKNAISNVAPAGG 194
            AK+P  + A P  SR+LH+R LP  AT+ D+  ++ +   + K ++   K QA +E+   + A  +V  FS  PA I D T+YI FS+ QEL  K+  + +A  GG
Sbjct:    7 AKKPRMEEAVPVTSRVLHIRNLPSDATEADVFMLMSTYGAVSKVLLLRQKNQAFVELAELSTACALVDAFSTRPAQIKDRTVYIQFSKHQEL--KSGSTPIANPGG 110

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A0X3NPV4_SCHSO (Polypyrimidine tract-binding protein 1 n=4 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A0X3NPV4_SCHSO)

HSP 1 Score: 58.9 bits (141), Expect = 6.590e-6
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 0

Query:  102 PPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 180
            PPS+++HVRGLP  AT+ D+  +      +V  V+ K   QAL+EME    A  +V+YF   PA++H   + + FS+ + L
Sbjct:   19 PPSKVVHVRGLPSDATEQDIALLAIPFGQVVNMVLSKRNNQALIEMELLERAIEMVNYFQEYPALLHGKQLILQFSKHEHL 99

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A2C9K9Y6_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K9Y6_BIOGL)

HSP 1 Score: 58.9 bits (141), Expect = 6.650e-6
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 0

Query:  102 PPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 180
            PPSR++H+R LPG A +TD+  +  S   +   ++ K   QA LE + ++ A  +V+YF  NPA +    +++ FS  +EL
Sbjct:  116 PPSRVVHIRSLPGEAGETDIVQLGMSFGKMTNVLVLKQKNQAFLEFQDESSAVAMVAYFQANPAQVRLKPVFVQFSNHKEL 196

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A183S862_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183S862_SCHSO)

HSP 1 Score: 58.9 bits (141), Expect = 6.690e-6
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 0

Query:  102 PPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 180
            PPS+++HVRGLP  AT+ D+  +      +V  V+ K   QAL+EME    A  +V+YF   PA++H   + + FS+ + L
Sbjct:    7 PPSKVVHVRGLPSDATEQDIALLAIPFGQVVNMVLSKRNNQALIEMELLERAIEMVNYFQEYPALLHGKQLILQFSKHEHL 87

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A2C9K9T3_BIOGL (Uncharacterized protein n=7 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K9T3_BIOGL)

HSP 1 Score: 58.9 bits (141), Expect = 6.710e-6
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 0

Query:  102 PPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 180
            PPSR++H+R LPG A +TD+  +  S   +   ++ K   QA LE + ++ A  +V+YF  NPA +    +++ FS  +EL
Sbjct:  129 PPSRVVHIRSLPGEAGETDIVQLGMSFGKMTNVLVLKQKNQAFLEFQDESSAVAMVAYFQANPAQVRLKPVFVQFSNHKEL 209

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BLAST of jgi.p|Trimin1|348865 vs. uniprot
Match: A0A3P7KYI5_DIBLA (Uncharacterized protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7KYI5_DIBLA)

HSP 1 Score: 55.8 bits (133), Expect = 6.700e-5
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 0

Query:  102 PPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKA--QALLEMESKADAGRVVSYFSRNPAVIHDATIYISFSRSQEL 180
            PPS+++HVRGLP  AT+ D+  +      +V  V+ K   QAL+EME    A  +V+YF    A++H   + + FS+ + L
Sbjct:   60 PPSKVVHVRGLPSDATEQDIALLAIPFGQVVNMVLSKRNNQALIEMELLERAIEMVNYFQEYAALLHGKQLILQFSKHEHL 140

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348865 vs. uniprot

BLAST of jgi.p|Trimin1|348865 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
A0A835YVG2_9STRA	7.690e-198	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
UPI001652677A	1.200e-7	38.37	polypyrimidine tract-binding protein 2-like n=1 Ta...	[more]
A0A0B7A7G7_9EUPU	1.220e-7	34.65	RRM domain-containing protein (Fragment) n=3 Tax=A...	[more]
UPI00065B6221	1.640e-7	38.37	polypyrimidine tract-binding protein 2 isoform X1 ...	[more]
A0A1X7UYZ1_AMPQE	5.700e-7	37.74	Uncharacterized protein n=2 Tax=Amphimedon queensl...	[more]
A0A0X3NPV4_SCHSO	6.590e-6	38.27	Polypyrimidine tract-binding protein 1 n=4 Tax=Dip...	[more]
A0A2C9K9Y6_BIOGL	6.650e-6	35.80	Uncharacterized protein n=1 Tax=Biomphalaria glabr...	[more]
A0A183S862_SCHSO	6.690e-6	38.27	Uncharacterized protein n=1 Tax=Schistocephalus so...	[more]
A0A2C9K9T3_BIOGL	6.710e-6	35.80	Uncharacterized protein n=7 Tax=Biomphalaria glabr...	[more]
A0A3P7KYI5_DIBLA	6.700e-5	37.04	Uncharacterized protein n=1 Tax=Dibothriocephalus ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 296..316
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 298..340
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..44
None	No IPR available	PANTHER	PTHR15592	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	coord: 94..185
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 92..191 e-value: 1.6E-15 score: 59.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 94..181

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_32	contig	Contig_32:547159..551143 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348865	mRNA_5224	Tribonema minus UTEX_B_3156	mRNA	Contig_32 547140..551368 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348865|estExt_Genemark1.C_Ctg_320070 ID=Trimin1|348865|estExt_Genemark1.C_Ctg_320070|Name=jgi.p|Trimin1|348865|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=341bp
MGDEPVREHAAEVEGGSGDEPDQAQEAGDQGEHEAAAMEGLRVSDDYADE
DDEDGDDNYSGEPSAKRNHNNHSRDGDQGPHYSSPSSNGGGAKRPSDQNA
NPPSRILHVRGLPGGATKTDLEDVIGSLAFIVKAVMFKAQALLEMESKAD
AGRVVSYFSRNPAVIHDATIYISFSRSQELSDKNAISNVAPAGGKRPRSP
AMGQYVAPFNSLGGGGGGMGMGMGGPRGGGMHMMVPGGGGGMNGMNGARG
GGGGGGGMMPFGGPVRGLSPDHSAMLQSAAMYLAQYNLPPAPGMLNIAYR
EQLEDSQREVQQQQQQAQQPPPPQYMQPPRRHPGGMGMRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf