Trimin1|348857|estExt_Genemark1.C_Ctg_320062 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348857
Unique NameTrimin1|348857|estExt_Genemark1.C_Ctg_320062
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length567
Homology
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A836CE73_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE73_9STRA)

HSP 1 Score: 930 bits (2404), Expect = 0.000e+0
Identity = 507/507 (100.00%), Postives = 507/507 (100.00%), Query Frame = 0
Query:    1 MDLPAALNLSAERRERLLNRANREMHDANLSEPRYWWSGVATITAELLLYDLFLILLLVKLDMDPELPWFVVALPIWITITQAAIRDVVRYTLRREAARMTAHYLAFRIGHDVCINVAVLTSVLRLGGAIPASVPWVVVLVPLWVDAVACSTYLALAPVPPHLDDVAARDYRGNMWNAALFHLGAFGLQAGLIATKVDGILHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLRLPSLSRPQRVIFASLALLALLAWMWLVCIFQAFEELVSALSEPKGPPPEAVDDILLPLITVVSVTVVFLPLLVATLVAAGVSEAGLAAGXXXXAGEAASLRPMAGPVMIVRQSSTYFKRATESLLDASAAAAEGDLEAHWGGEVAGDERPGAAXXXXXXXXXXXXEGEPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHARCRIGQPVQSQEGMSVSVAPPPXTPGVPEAASIP 507
            MDLPAALNLSAERRERLLNRANREMHDANLSEPRYWWSGVATITAELLLYDLFLILLLVKLDMDPELPWFVVALPIWITITQAAIRDVVRYTLRREAARMTAHYLAFRIGHDVCINVAVLTSVLRLGGAIPASVPWVVVLVPLWVDAVACSTYLALAPVPPHLDDVAARDYRGNMWNAALFHLGAFGLQAGLIATKVDGILHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLRLPSLSRPQRVIFASLALLALLAWMWLVCIFQAFEELVSALSEPKGPPPEAVDDILLPLITVVSVTVVFLPLLVATLVAAGVSEAGLAAGXXXXAGEAASLRPMAGPVMIVRQSSTYFKRATESLLDASAAAAEGDLEAHWGGEVAGDERPGAAXXXXXXXXXXXXEGEPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHARCRIGQPVQSQEGMSVSVAPPPXTPGVPEAASIP
Sbjct:    1 MDLPAALNLSAERRERLLNRANREMHDANLSEPRYWWSGVATITAELLLYDLFLILLLVKLDMDPELPWFVVALPIWITITQAAIRDVVRYTLRREAARMTAHYLAFRIGHDVCINVAVLTSVLRLGGAIPASVPWVVVLVPLWVDAVACSTYLALAPVPPHLDDVAARDYRGNMWNAALFHLGAFGLQAGLIATKVDGILHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLRLPSLSRPQRVIFASLALLALLAWMWLVCIFQAFEELVSALSEPKGPPPEAVDDILLPLITVVSVTVVFLPLLVATLVAAGVSEAGLAAGXXXXAGEAASLRPMAGPVMIVRQSSTYFKRATESLLDASAAAAEGDLEAHWGGEVAGDERPGAAXXXXXXXXXXXXEGEPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHARCRIGQPVQSQEGMSVSVAPPPXTPGVPEAASIP 507          
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S3ZTM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTM6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.460e-8
Identity = 117/411 (28.47%), Postives = 158/411 (38.44%), Query Frame = 0
Query:  161 PHLDDVAARDYRGNMW-NAALFHLGAF------GLQAGLIATKVDGILHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLRLPSLSRPQRVIFASLALLALLAWMWLV---CIF--------------------------------------QAFEELVSALSE--PKGPPPEAVDDILLPLITVVSVTVVFLPLLVA-----------TLVAAGVSEA---GLAAGXXXXAGEAASL----------RPMAGPVMIVRQSSTYFKRA-------TESLLDASAAAAEGDLEAHWGGEVAGDERPGAAXXXXXXXXXXXXEGEPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHARCRIGQP-VQSQEGMSV 489
            P LD+V   D     W  A  F  GAF       LQ  L+A K+DG L   W  +F PA+     L+ ALAG    L       C  + S   P RV   ++ L++L A   LV   C F                                        +E L + LS+  P+ P P    DIL PLI + ++  +  P+++             +V A   EA      AG     G  ASL            +  P  +++ SST ++R        T+    A A AA  D +   G    GD+    A                  A     LCYVC     NAV++ECGH GIC+ECG+ L   R  R+CPICR  I  ++R+    R   G P V S EG+ V
Sbjct:  230 PTLDEVL--DGPCEAWARACAFTQGAFLHGVGRALQPALVAAKLDGALEARWGLIFAPAW----ALLAALAGVAATLCN-----CAPVLSAGMPPRVRRRAVRLVSLCATQLLVLSGCTFLCLLRLSKRLDADEAAARRFHDRWDRRDCDALISSSNVTTYESLCAPLSKDGPRSPTPL---DILGPLILMYALLFILHPIVLRDSRRFQRVVQIVVVDADDLEAQRRARGAGFDVFLGAPASLVGVQDNSVIIEALENPTRLLKTSSTLYERMEADSPKQTQIAHCAPAPAAWDDDDCSMGSSRFGDDDLEIAEAP---------------APSPSHLCYVCCVSRKNAVIMECGHGGICFECGKSLAS-RHPRNCPICRAPISAVLRVE---RREPGSPHVFSPEGVVV 607          
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S3JUI3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUI3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.820e-8
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0
Query:  418 LCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHAR 474
            LCY+C   P +AVL+ECGHAG+C+ C Q L   R  RSCPICR  I  +++L  H R
Sbjct:  429 LCYICYVAPRDAVLMECGHAGVCFSCAQKLAV-RHPRSCPICRQPISTVLKLSTHDR 484          
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S2XWW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWW7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.080e-7
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 0
Query:  419 CYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHARCRIGQP--VQSQEGMSVS 490
            C VC    +NAVLLECGH+G+C+ C Q L  QR  + CP+CR  I  I+R+        GQ    +S+E MS++
Sbjct:   33 CLVCWNARSNAVLLECGHSGLCFPCAQALA-QRYPQQCPMCRQNIVQILRIEPEIAGTSGQTRVFRSEEVMSIA 105          
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S3EPQ4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EPQ4_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 9.330e-7
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 0
Query:  416 DKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRL 469
            D LC +C     +AVLLECGH GICY C +   K++R R CP+CR  +  +V +
Sbjct:   28 DSLCLICFEGQRDAVLLECGHGGICYACARRCFKKKR-RECPMCRQPVTQVVHI 80          
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S0MBZ6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MBZ6_9CRYP)

HSP 1 Score: 61.6 bits (148), Expect = 1.160e-6
Identity = 43/112 (38.39%), Postives = 58/112 (51.79%), Query Frame = 0
Query:  406 EGEPKGASFA--DKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRE--RSCPICRVTIEHIVRLPDHARCRIGQPVQSQEGMSVSVAPPPXTP------GVPEAASIP 507
            E EPK A     D+ C VC  + A+A+LLECGH GIC EC   +  QR +  R CP+CR     ++R+     CR G  V+  E +    APPP  P      G  +A ++P
Sbjct:  133 ENEPKLAKLDADDEACAVCLEKDADAILLECGHGGICCECAGRIWAQRADLVRPCPLCRQGFSGVMRIV----CRDGATVRV-EPLHYVYAPPPSKPPDGAEAGAEDAEALP 239          
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A6U5ESI1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5ESI1_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 4.770e-6
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query:  408 EPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQR-RERSCPICRVTIEHIVRL 469
            EP      +  C++C   P +AV+LECGH GIC  C + L+K++ R + CP+CR  I  +V++
Sbjct:   31 EPGEGGGRETACWICFEGPRDAVMLECGHGGICMGCAKRLLKKKGRGKGCPMCRQPISQVVQV 93          
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S0LZR7_9CRYP (RING-type E3 ubiquitin transferase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZR7_9CRYP)

HSP 1 Score: 56.6 bits (135), Expect = 8.750e-6
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 0
Query:  419 CYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRL 469
            C VC  RP++AVLLECGH+G+C EC   L  Q R   CP+CR +   ++R+
Sbjct:   43 CIVCMERPSDAVLLECGHSGLCVECATALWDQARR--CPLCRQSFAAVMRI 91          
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S3AG72_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG72_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 1.210e-5
Identity = 50/157 (31.85%), Postives = 74/157 (47.13%), Query Frame = 0
Query:  339 SLRPMAGPVMIVRQSSTYFKRATESLLDASAAAAE-GDLEAHWGGE----VAGDERPGAAXXXXXXXXXXXXEGEP------KGASFADKL-------------CYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPD 471
            SL P   P ++V++SST F++ +   L+  +  +E G+LE H GG     V G +                 +GE        GA++++ L             C+VC   PA+AVLL+CGH G+C  C + L K R    CP+CR  I+   RL D
Sbjct:  134 SLDPNLLPRLLVQESSTLFRQVSSRTLERYSRLSESGNLE-HVGGPSTPPVGGYDLEEGCRLDTTRTIAFTPDGEALSLSERAGAAYSELLGIDQNADASEANVCWVCFEAPADAVLLQCGHGGLCITCAENLWKSRAP--CPMCRQPIDVFARLGD 287          
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: R1BX35_EMIHU (RING-type domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BX35_EMIHU)

HSP 1 Score: 54.7 bits (130), Expect = 1.470e-5
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0
Query:  419 CYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRL 469
            C++C   P +AVLLECGH GIC  C + + K +R R CP+CR  +  +V+L
Sbjct:   36 CWICYEGPRDAVLLECGHGGICVACARRVFK-KRGRLCPMCRQPVSQMVQL 85          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A836CE73_9STRA0.000e+0100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3ZTM6_9STRA2.460e-828.47Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JUI3_9STRA3.820e-852.63Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2XWW7_9STRA1.080e-743.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3EPQ4_9EUKA9.330e-746.30Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0MBZ6_9CRYP1.160e-638.39Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A6U5ESI1_9EUKA4.770e-639.68Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0LZR7_9CRYP8.750e-649.02RING-type E3 ubiquitin transferase n=1 Tax=Cryptom... [more]
A0A7S3AG72_9EUKA1.210e-531.85Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
R1BX35_EMIHU1.470e-547.06RING-type domain-containing protein n=1 Tax=Emilia... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 419..459
e-value: 2.4E-5
score: 33.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 419..460
score: 11.412309
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 412..470
e-value: 4.9E-12
score: 47.2
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 416..465
e-value: 7.9E-13
score: 48.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 486..566
NoneNo IPR availablePANTHERPTHR14879:SF5OS06G0252500 PROTEINcoord: 395..468
NoneNo IPR availablePANTHERPTHR14879CASPASE REGULATOR, RING FINGER DOMAIN-CONTAININGcoord: 395..468
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 416..467

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:508665..516014 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348857mRNA_5216Tribonema minus UTEX_B_3156 mRNAContig_32 508598..516019 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348857|estExt_Genemark1.C_Ctg_320062 ID=Trimin1|348857|estExt_Genemark1.C_Ctg_320062|Name=jgi.p|Trimin1|348857|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=567bp
MDLPAALNLSAERRERLLNRANREMHDANLSEPRYWWSGVATITAELLLY
DLFLILLLVKLDMDPELPWFVVALPIWITITQAAIRDVVRYTLRREAARM
TAHYLAFRIGHDVCINVAVLTSVLRLGGAIPASVPWVVVLVPLWVDAVAC
STYLALAPVPPHLDDVAARDYRGNMWNAALFHLGAFGLQAGLIATKVDGI
LHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLRLPSLSRPQRV
IFASLALLALLAWMWLVCIFQAFEELVSALSEPKGPPPEAVDDILLPLIT
VVSVTVVFLPLLVATLVAAGVSEAGLAAGGAGGAGEAASLRPMAGPVMIV
RQSSTYFKRATESLLDASAAAAEGDLEAHWGGEVAGDERPGAAAAAAPAA
AAAAAEGEPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQ
RRERSCPICRVTIEHIVRLPDHARCRIGQPVQSQEGMSVSVAPPPPTPGV
PEAASIPPALAAALQNPPQAAAGAQQGAAGDAAAAAGGEAAAQDGGGDVV
PPAQGGGAARGATAPT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD