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Homology
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A836CE73_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE73_9STRA) HSP 1 Score: 931 bits (2405), Expect = 0.000e+0 Identity = 507/507 (100.00%), Postives = 507/507 (100.00%), Query Frame = 2
Query: 68 MDLPAALNLSAERRERLLNRANREMHDANLSEPRYWWSGVATITAELLLYDLFLILLLVKLDMDPELPWFVVALPIWITITQAAIRDVVRYTLRREAARMTAHYLAFRIGHDVCINVAVLTSVLRLGGAIPASVPWVVVLVPLWVDAVACSTYLALAPVPPHLDDVAARDYRGNMWNAALFHLGAFGLQAGLIATKVDGILHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLRLPSLSRPQRVIFASLALLALLAWMWLVCIFQAFEELVSALSEPKGPPPEAVDDILLPLITVVSVTVVFLPLLVATLVAAGVSEAGLAAGXXXXAGEAASLRPMAGPVMIVRQSSTYFKRATESLLDASAAAAEGDLEAHWGGEVAGDERPGAAXXXXXXXXXXXXEGEPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHARCRIGQPVQSQEGMSVSVAPPPXTPGVPEAASIP 1588
MDLPAALNLSAERRERLLNRANREMHDANLSEPRYWWSGVATITAELLLYDLFLILLLVKLDMDPELPWFVVALPIWITITQAAIRDVVRYTLRREAARMTAHYLAFRIGHDVCINVAVLTSVLRLGGAIPASVPWVVVLVPLWVDAVACSTYLALAPVPPHLDDVAARDYRGNMWNAALFHLGAFGLQAGLIATKVDGILHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLRLPSLSRPQRVIFASLALLALLAWMWLVCIFQAFEELVSALSEPKGPPPEAVDDILLPLITVVSVTVVFLPLLVATLVAAGVSEAGLAAGXXXXAGEAASLRPMAGPVMIVRQSSTYFKRATESLLDASAAAAEGDLEAHWGGEVAGDERPGAAXXXXXXXXXXXXEGEPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHARCRIGQPVQSQEGMSVSVAPPPXTPGVPEAASIP
Sbjct: 1 MDLPAALNLSAERRERLLNRANREMHDANLSEPRYWWSGVATITAELLLYDLFLILLLVKLDMDPELPWFVVALPIWITITQAAIRDVVRYTLRREAARMTAHYLAFRIGHDVCINVAVLTSVLRLGGAIPASVPWVVVLVPLWVDAVACSTYLALAPVPPHLDDVAARDYRGNMWNAALFHLGAFGLQAGLIATKVDGILHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLRLPSLSRPQRVIFASLALLALLAWMWLVCIFQAFEELVSALSEPKGPPPEAVDDILLPLITVVSVTVVFLPLLVATLVAAGVSEAGLAAGXXXXAGEAASLRPMAGPVMIVRQSSTYFKRATESLLDASAAAAEGDLEAHWGGEVAGDERPGAAXXXXXXXXXXXXEGEPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHARCRIGQPVQSQEGMSVSVAPPPXTPGVPEAASIP 507
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S3ZTM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTM6_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 2.650e-8 Identity = 117/411 (28.47%), Postives = 158/411 (38.44%), Query Frame = 2
Query: 548 PHLDDVAARDYRGNMW-NAALFHLGAF------GLQAGLIATKVDGILHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLRLPSLSRPQRVIFASLALLALLAWMWLV---CIF--------------------------------------QAFEELVSALSE--PKGPPPEAVDDILLPLITVVSVTVVFLPLLVA-----------TLVAAGVSEA---GLAAGXXXXAGEAASL----------RPMAGPVMIVRQSSTYFKRA-------TESLLDASAAAAEGDLEAHWGGEVAGDERPGAAXXXXXXXXXXXXEGEPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHARCRIGQP-VQSQEGMSV 1534
P LD+V D W A F GAF LQ L+A K+DG L W +F PA+ L+ ALAG L C + S P RV ++ L++L A LV C F +E L + LS+ P+ P P DIL PLI + ++ + P+++ +V A EA AG G ASL + P +++ SST ++R T+ A A AA D + G GD+ A A LCYVC NAV++ECGH GIC+ECG+ L R R+CPICR I ++R+ R G P V S EG+ V
Sbjct: 230 PTLDEVL--DGPCEAWARACAFTQGAFLHGVGRALQPALVAAKLDGALEARWGLIFAPAW----ALLAALAGVAATLCN-----CAPVLSAGMPPRVRRRAVRLVSLCATQLLVLSGCTFLCLLRLSKRLDADEAAARRFHDRWDRRDCDALISSSNVTTYESLCAPLSKDGPRSPTPL---DILGPLILMYALLFILHPIVLRDSRRFQRVVQIVVVDADDLEAQRRARGAGFDVFLGAPASLVGVQDNSVIIEALENPTRLLKTSSTLYERMEADSPKQTQIAHCAPAPAAWDDDDCSMGSSRFGDDDLEIAEAP---------------APSPSHLCYVCCVSRKNAVIMECGHGGICFECGKSLAS-RHPRNCPICRAPISAVLRVE---RREPGSPHVFSPEGVVV 607
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S3JUI3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUI3_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 4.110e-8 Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 2
Query: 1319 LCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHAR 1489
LCY+C P +AVL+ECGHAG+C+ C Q L R RSCPICR I +++L H R
Sbjct: 429 LCYICYVAPRDAVLMECGHAGVCFSCAQKLAV-RHPRSCPICRQPISTVLKLSTHDR 484
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S2XWW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWW7_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.130e-7 Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 2
Query: 1322 CYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPDHARCRIGQP--VQSQEGMSVS 1537
C VC +NAVLLECGH+G+C+ C Q L QR + CP+CR I I+R+ GQ +S+E MS++
Sbjct: 33 CLVCWNARSNAVLLECGHSGLCFPCAQALA-QRYPQQCPMCRQNIVQILRIEPEIAGTSGQTRVFRSEEVMSIA 105
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S3EPQ4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EPQ4_9EUKA) HSP 1 Score: 57.8 bits (138), Expect = 9.750e-7 Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 2
Query: 1313 DKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRL 1474
D LC +C +AVLLECGH GICY C + K++R R CP+CR + +V +
Sbjct: 28 DSLCLICFEGQRDAVLLECGHGGICYACARRCFKKKR-RECPMCRQPVTQVVHI 80
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S0MBZ6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MBZ6_9CRYP) HSP 1 Score: 61.6 bits (148), Expect = 1.230e-6 Identity = 43/112 (38.39%), Postives = 58/112 (51.79%), Query Frame = 2
Query: 1283 EGEPKGASFA--DKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQRRE--RSCPICRVTIEHIVRLPDHARCRIGQPVQSQEGMSVSVAPPPXTP------GVPEAASIP 1588
E EPK A D+ C VC + A+A+LLECGH GIC EC + QR + R CP+CR ++R+ CR G V+ E + APPP P G +A ++P
Sbjct: 133 ENEPKLAKLDADDEACAVCLEKDADAILLECGHGGICCECAGRIWAQRADLVRPCPLCRQGFSGVMRIV----CRDGATVRV-EPLHYVYAPPPSKPPDGAEAGAEDAEALP 239
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A6U5ESI1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5ESI1_9EUKA) HSP 1 Score: 56.2 bits (134), Expect = 4.990e-6 Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 2
Query: 1289 EPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQR-RERSCPICRVTIEHIVRL 1474
EP + C++C P +AV+LECGH GIC C + L+K++ R + CP+CR I +V++
Sbjct: 31 EPGEGGGRETACWICFEGPRDAVMLECGHGGICMGCAKRLLKKKGRGKGCPMCRQPISQVVQV 93
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S0LZR7_9CRYP (RING-type E3 ubiquitin transferase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZR7_9CRYP) HSP 1 Score: 56.6 bits (135), Expect = 9.180e-6 Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 2
Query: 1322 CYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRL 1474
C VC RP++AVLLECGH+G+C EC L Q R CP+CR + ++R+
Sbjct: 43 CIVCMERPSDAVLLECGHSGLCVECATALWDQARR--CPLCRQSFAAVMRI 91
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: A0A7S3AG72_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG72_9EUKA) HSP 1 Score: 58.5 bits (140), Expect = 1.290e-5 Identity = 50/157 (31.85%), Postives = 74/157 (47.13%), Query Frame = 2
Query: 1082 SLRPMAGPVMIVRQSSTYFKRATESLLDASAAAAE-GDLEAHWGGE----VAGDERPGAAXXXXXXXXXXXXEGEP------KGASFADKL-------------CYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRLPD 1480
SL P P ++V++SST F++ + L+ + +E G+LE H GG V G + +GE GA++++ L C+VC PA+AVLL+CGH G+C C + L K R CP+CR I+ RL D
Sbjct: 134 SLDPNLLPRLLVQESSTLFRQVSSRTLERYSRLSESGNLE-HVGGPSTPPVGGYDLEEGCRLDTTRTIAFTPDGEALSLSERAGAAYSELLGIDQNADASEANVCWVCFEAPADAVLLQCGHGGLCITCAENLWKSRAP--CPMCRQPIDVFARLGD 287
BLAST of jgi.p|Trimin1|348857 vs. uniprot
Match: R1BX35_EMIHU (RING-type domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BX35_EMIHU) HSP 1 Score: 54.7 bits (130), Expect = 1.530e-5 Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 2
Query: 1322 CYVCEGRPANAVLLECGHAGICYECGQGLVKQRRERSCPICRVTIEHIVRL 1474
C++C P +AVLLECGH GIC C + + K +R R CP+CR + +V+L
Sbjct: 36 CWICYEGPRDAVLLECGHGGICVACARRVFK-KRGRLCPMCRQPVSQMVQL 85
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|348857|estExt_Genemark1.C_Ctg_320062 |
| BRITE | ko00000,ko00001,ko00536,ko01000,ko01002,ko03400,ko04090,ko04121,ko04516 |
| KEGG rclass | RC00064,RC00090,RC00096 |
| KEGG Reaction | R00494,R01262,R01687,R03916,R03970,R03971,R09875 |
| KEGG Pathway | ko00430,ko00460,ko00480,ko00590,ko01100,ko03440,ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map00430,map00460,map00480,map00590,map01100,map03440,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165 |
| KEGG ko | ko:K06236,ko:K10871,ko:K18592,ko:K20804 |
| EC | 2.3.2.2,2.3.2.31,3.4.19.13,3.4.19.14 |
| GOs | GO:0000003,GO:0000150,GO:0000151,GO:0000209,GO:0000228,GO:0000280,GO:0000707,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000781,GO:0000784,GO:0001959,GO:0001960,GO:0002020,GO:0002039,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005768,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0008092,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008289,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009409,GO:0009628,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010212,GO:0010466,GO:0010498,GO:0010605,GO:0010646,GO:0010648,GO:0010762,GO:0010803,GO:0010804,GO:0010941,GO:0010951,GO:0012505,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016567,GO:0016604,GO:0016740,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019900,GO:0019901,GO:0019941,GO:0022402,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030162,GO:0030163,GO:0030334,GO:0030522,GO:0031090,GO:0031323,GO:0031324,GO:0031410,GO:0031625,GO:0031974,GO:0031981,GO:0031982,GO:0032006,GO:0032200,GO:0032268,GO:0032269,GO:0032446,GO:0032879,GO:0032991,GO:0033036,GO:0033061,GO:0033063,GO:0033554,GO:0034613,GO:0034622,GO:0034641,GO:0035091,GO:0035825,GO:0035872,GO:0036211,GO:0040012,GO:0042148,GO:0042592,GO:0042623,GO:0042886,GO:0042981,GO:0043015,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043281,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045003,GO:0045184,GO:0045861,GO:0046483,GO:0046872,GO:0046907,GO:0046914,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051270,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0060249,GO:0060255,GO:0060548,GO:0060759,GO:0060761,GO:0061630,GO:0061659,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070417,GO:0070647,GO:0070727,GO:0070936,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0090735,GO:0097159,GO:0097708,GO:0098588,GO:0098687,GO:0098805,GO:0140013,GO:0140096,GO:0140097,GO:1900117,GO:1900118,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901796,GO:1901797,GO:1901981,GO:1902041,GO:1902042,GO:1902494,GO:1902531,GO:1902532,GO:1903046,GO:1990234,GO:2000116,GO:2000117,GO:2000145,GO:2000374,GO:2001233,GO:2001234,GO:2001236,GO:2001237,GO:2001270,GO:2001271 |
| Preferred name | RFFL |
| Description | negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis |
| COG category | S |
| Max annot lvl | 2759|Eukaryota |
| EggNOG OGs | KOG4275@1|root,KOG4275@2759|Eukaryota |
| Evalue | 1.75e-06 |
| Seed ortholog | 109760.SPPG_09398T0 |
| Hectar predicted targeting category | signal anchor |
| TranscriptId | 349179 |
| Track | FilteredModels1 |
| ProteinId | 348857 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5216 ID=mRNA_5216|Name=jgi.p|Trimin1|348857|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1773bp|location=Sequence derived from alignment at Contig_32:508598..516019+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
CTCGCACACACACAGGCGGTAGCAGGTGAACTGGAATGGAATAGCGGTGG CGGCCACGTACGGAACGATGGACCTGCCGGCGGCATTGAATTTGTCAGCC GAGCGGCGGGAGCGGCTCCTGAACAGGGCCAACAGGGAAATGCATGATGC CAACCTCAGCGAGCCGCGGTACTGGTGGTCAGGGGTGGCTACGATCACGG CGGAGCTGCTGCTGTACGACCTCTTCCTGATACTGCTGCTGGTGAAGCTG GATATGGACCCGGAGCTGCCGTGGTTTGTGGTGGCGCTGCCGATATGGAT CACCATCACGCAAGCAGCGATCCGCGACGTCGTGCGCTACACGCTGCGGC GCGAGGCCGCGCGCATGACGGCGCACTACCTCGCCTTCCGCATCGGCCAC GACGTCTGCATCAACGTGGCAGTGCTCACGTCAGTGCTCCGCCTCGGCGG CGCGATCCCCGCCTCCGTGCCGTGGGTCGTGGTGCTGGTGCCGCTGTGGG TGGACGCCGTCGCGTGCAGCACGTATCTCGCGCTCGCGCCGGTGCCGCCG CACCTGGATGATGTTGCCGCGCGCGACTACCGCGGCAACATGTGGAACGC CGCGCTGTTTCACCTGGGGGCGTTCGGCCTGCAGGCGGGGCTCATCGCCA CCAAGGTGGACGGCATCCTCCACGGCTCCTGGTCCAACGTCTTCATCCCC GCCTTCCTCGCGCTCATCGTTCTGGTCATTGCGCTCGCCGGCACGACGCT CCACCTCATGGGCGTCTTCTGCCCCATGTGCCTGCGCCTGCCGTCGCTGT CGCGCCCACAGCGCGTCATCTTCGCCTCCCTCGCGCTGCTCGCACTGCTC GCCTGGATGTGGCTGGTGTGCATCTTCCAGGCCTTCGAGGAGCTCGTCTC GGCACTGTCGGAGCCCAAGGGACCCCCCCCCGAGGCCGTGGACGATATCT TGCTCCCCCTCATAACCGTCGTATCTGTAACTGTCGTGTTCCTGCCGCTT CTCGTGGCAACGCTCGTCGCGGCGGGGGTCAGCGAGGCGGGGCTCGCGGC GGGGGGCGCGGGGGGGGCGGGGGAGGCGGCGTCGCTGCGGCCGATGGCGG GCCCGGTGATGATTGTGCGGCAGTCGAGTACCTACTTCAAGCGCGCTACG GAGTCCCTTCTGGACGCGAGTGCGGCCGCGGCGGAGGGGGATCTGGAGGC GCACTGGGGGGGCGAAGTCGCAGGGGACGAGCGGCCAGGGGCGGCGGCGG CGGCAGCGCCCGCAGCAGCAGCGGCGGCGGCAGAAGGGGAGCCGAAGGGC GCCAGCTTTGCGGACAAGCTTTGCTATGTGTGCGAGGGAAGACCGGCAAA CGCGGTTCTGCTGGAATGCGGCCACGCAGGCATCTGCTACGAGTGCGGGC AGGGCCTGGTGAAACAGCGGCGGGAGCGCTCGTGCCCCATCTGCCGCGTC ACCATCGAGCACATTGTGCGCCTGCCGGACCACGCGCGCTGCCGCATCGG GCAGCCCGTGCAGTCGCAGGAGGGCATGAGCGTTAGCGTCGCCCCCCCGC CCCCCACCCCCGGCGTGCCGGAGGCCGCATCCATCCCCCCCGCGCTCGCC GCCGCGCTGCAGAACCCCCCCCAAGCGGCAGCGGGGGCTCAGCAGGGGGC GGCTGGCGATGCGGCGGCGGCGGCGGGGGGCGAGGCAGCTGCGCAGGACG GCGGGGGGGATGTGGTGCCCCCCGCGCAAGGGGGGGGGGCGGCGAGGGGG GCGACGGCCCCGACATGACGGAG back to topprotein sequence of jgi.p|Trimin1|348857 >Trimin1|348857|estExt_Genemark1.C_Ctg_320062 ID=Trimin1|348857|estExt_Genemark1.C_Ctg_320062|Name=jgi.p|Trimin1|348857|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=567bp
MDLPAALNLSAERRERLLNRANREMHDANLSEPRYWWSGVATITAELLLY DLFLILLLVKLDMDPELPWFVVALPIWITITQAAIRDVVRYTLRREAARM TAHYLAFRIGHDVCINVAVLTSVLRLGGAIPASVPWVVVLVPLWVDAVAC STYLALAPVPPHLDDVAARDYRGNMWNAALFHLGAFGLQAGLIATKVDGI LHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLRLPSLSRPQRV IFASLALLALLAWMWLVCIFQAFEELVSALSEPKGPPPEAVDDILLPLIT VVSVTVVFLPLLVATLVAAGVSEAGLAAGGAGGAGEAASLRPMAGPVMIV RQSSTYFKRATESLLDASAAAAEGDLEAHWGGEVAGDERPGAAAAAAPAA AAAAAEGEPKGASFADKLCYVCEGRPANAVLLECGHAGICYECGQGLVKQ RRERSCPICRVTIEHIVRLPDHARCRIGQPVQSQEGMSVSVAPPPPTPGV PEAASIPPALAAALQNPPQAAAGAQQGAAGDAAAAAGGEAAAQDGGGDVV PPAQGGGAARGATAPT* back to topmRNA from alignment at Contig_32:508598..516019+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5216 ID=mRNA_5216|Name=jgi.p|Trimin1|348857|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7422bp|location=Sequence derived from alignment at Contig_32:508598..516019+ (Tribonema minus UTEX_B_3156 ) CTCGCACACACACAGGCGGTAGCAGGTGAACTGGAATGGAATAGCGGTGG
CGGCCACGTACGGAACGATGGACCTGCCGGCGGCATTGAATTTGTCAGCC
GAGCGGCGGGAGCGGGTGCGTGCTGGTGTGCCTCTGTGTGCTTTTGGCGA
AGGCTGCCCTTGTTGACTCAAAAACGCTTGTTTTTTGATGACAAGCTGGT
TATTTTCCGGCAGCATGATGATCAGCCTGCGAGCTTGTGTGGCTTCTGCA
GCGGGAGTGGTACACACCGACATGGGTGTGCTTTTTGCTTGGCTCGCACA
ACCGGCACATCAATCAGATCTCTCAGCCGCAATCTTGCATGAGCTTTCGG
CAATTGTGACCAATGATGAACTTGGTGAGCTTCTCTCTGCGTCAATTGTG
CTGCTGTTAACATGAAGCTGCTCCAAGCTTCACAGCACTTCGCTGATTCT
CTCCACCTGCCGCTTTTCTGATTAACTCACCTATGTACCATTGCTCCCTT
GCACAGCTCCTGAACAGGGCCAACAGGGAAATGCATGATGCCAACCTCAG
CGAGCCGCGGTACTGGTGGTCAGGGGTGGCTACGATCACGGCGGAGCTGC
TGCTGTACGACCTCTTCCTGATACTGCTGCTGGTGAAGCTGGATATGGAC
CCGGAGCTGCCGTGGTTTGTGGTGGCGCTGCCGATATGGATCACCATCAC
GCAAGCAGGTGAGGCCGCTGACGCCGCACATGTTTACACAATACATTCAC
GAACGCCCTCATATGTGTTCAAGAATGACCGAAGCAGCACATGCTCTGGC
GTGACCGGTCGGCCCATCGATGGTGGTACAAGGCAGCATCGCAGGAGTGG
CGGCATGTTGGAGCACCAGGAGCACGCAGCAAGAAGCAGCAGCACGTCAA
CGATGACTTTGTGCTGAGCCGCTGCTGCGCTTCGCCTGTCGCGCCTCTGC
CCATGAGCACAAACGCGACGTGAAGACCGGCATGGCGCATGCTGCCTTGA
TTGCACTCTGAGCATCAGCGAGATAGGTTGTTCCAGATGCTGCAGCGCAT
AGTGACGGAGCAAGTCAGCCTCCAGGCCCACTTCTGCTCGTGTTACATCA
CCATCATGCTGCGAATGCCTGGGCGCTGTGCTCGTGCTCTGAGTTCCGTG
CAGCTCACATTGCAGTCACATTGTGCCTCGTGCAGCACCGCAGTCACTGC
CGCTAGAGGCTGGTGGTATGTCATGCCAGTCTCAGCGGCGTCTGCCCGGC
GACTATGCCGGCAGGGCTGCCCGTGAGTGCGCTCGCTGCGGGATTCCCAT
TCATTTTGTACTGGCGCATCTCTGATGACAGTGCGCTACGTAGACTCGGG
TGCTTGCTCTGCAGGCGACGTGTATCGTGCAGAGCTTCAAAGGCTGGGTC
AACAACCCAGCAACCCTGAAATCCCGCAGGGTGATAGAACCAGTAGTACA
TAGCAGTGATCACGTACATAGGGCCACCGACCGTGCTTGCTGCATGCACA
GGTGACCACACACTTGTCGCTGCCGCCCGCCCTTCACGAGAACGCGCAGA
TGCGTGAACGTGTTAGGCGCATGCAGTCGTTCGGAGTGCGCTTCATGCCC
TGCGTACATACATACCATGCAGCGATGCTCAGCAATGGTCAAGTCCTCAC
CCATACTCATGCTTACCCCGCTGGCTGGCGCACTCGCATCAGCGAGGGAC
ACCAAGCGCTATGACTGCACGCCGTCGCACCGGTCACAGCGCGCTCAGGC
GCTCCAAGAGGGATGGCACGAACGCTCAGCCACACACACCAACTGTGCCT
GTCGCTGAAGCGTGCTTCCCGCAGCCGAGCGGGACACGCTGCGCCGGGCC
GCCGCGTACCAGTTCATTCGGCGACGCTTAGGGTTGAGGGTTACGTAACC
CTAACCGTAACGCTACACCAGTTCATGTGATGACGCGCCTCGATTCTCAT
GACTTAAGAGCGTGGACACGTGCTCAGCTGACCCCCCCCCCCCCCCCCCC
CCTTCCCCCCCCCCCCGGGACACGCCACACTGTGCTTCTTCAATTCCACT
CGATCTCACCTGACAGCCTCGAACTACAGTTCTGTATACTCAGCTCATGT
GGCGCACCACCCCCCCCACCTCACCCACCCCCCCTGTCCCCCGCTGCGGC
AACGATCCGCGACGTTGTGTGCTACACGCTGCGCCACTTCAGTTCCACTC
AATCTCACCTATCTGCCTTGAACCACTGTACTCAACTCATGAGGCACTGC
TGCACACTCACCCCCCCCCCCCCCCGCCCCCCGCTGCCGCCGCGGCAGCG
ATCCGCAACGTCGTGTGCTACACGCTGCGACACTTCAGTTCCACTCAATC
TCACCTAACTGCCTTGAACCACTGTACTCAGTTCATGTGGCACTGCAGCA
CACTCAACCCCCCCCCCTCCCCCCCCTCCCCCCCCCCATCCCCGCCCCCC
GCCCCCCGCCGCGTGGCAGCGATCCGCGACGTCGTGCGCTACACGCTGCG
GCGCGAGGCCGCGCGCATGACGGCGCACTACCTCGCCTTCCGCATCGGCC
ACGACGTCTGCATCAACGTGGCAGTGCTCACGTCAGTGCTCCGCCTCGGC
GGCGCGATCCCCGCCTCCGTGCCGTGGGTCGTGGTGCTGGTGCCGCTGTG
GGTGGACGCCGTCGCGTGCAGCACGTATCTCGCGCTCGCGCCGGTGCCGC
CGCACCTGGATGATGTTGCCGCGCGCGACTACCGCGGCAACATGTGGAAC
GCCGCGCTGTTTCACCTGGGGGCGTTCGGCCTGCAGGCGGGGCTCATCGC
CACCAAGGTGGGCATGTACGTGTGCGTACACTAGGTAGGCATGCGTTGCG
GAATCAGCAGCTTTACCAAGGTAGGCATGCTCACATACCGCTGAAAATGC
AGTCCTCATGCCGAGGTAGGTGTTGCAGAGCTTCAGCATGCGCATCAGTC
TGTGGGGGTGACAAGGGCCCTCATTGGCGCCCGGGCTAGGTGCCTGTGCG
GCTTGGAATTCCCTCACTCTTTGAATATGCACAACAGTAGGAGACTGCAC
ACTTTGCGGTTCGACGCGCTCGCACTGTCCGCTACTGTGCCGACAACACC
CACCCCCGCTTTTTCCTTACGTGTCGCGGGGATTTTGGGTCGCGCGCCAC
ACAGCATGAGGCGCTGCCGCTGCGACAGATGAACTCTACTGTGCTGACCA
CGCCCACTCCCGCATTTTCCTTGCCATTTCCCGGAACTTTCTTGCATTTC
CTGCGCAGGTGGACGGCATCCTCCACGGCTCCTGGTCCAACGTCTTCATC
CCCGCCTTCCTCGCGCTCATCGTTCTGGTCATTGCGCTCGCCGGCACGAC
GCTCCACCTCATGGGCGTCTTCTGCCCCATGTGCCTGCGCCTGCCGTCGC
TGTCGCGCCCACAGCGCGTCATCTTCGCCTCCCTCGCGCTGCTCGCACGT
GAGTCTGAACCCTCCATTACAAACTTCAAGTTCAGGGGCGTGGGTGCGGG
GGTGTGTACCCAAGGGAGGCTCAATGTATTCCGTAGTTTCTGTACTTGGC
GCTATCGCACCTCTCTCACGCTGCTCGCACATGAGTCTGAAGCCCCTAAC
CTTAGTTGTAAACTTCAAGTTCAGGAGCATGGGTGCAGGTACCCGAGAGG
CTTGATGTGTTATGTAGGCTCTGTACAGTCCTTGTACCTGTCGCAGTCGC
GCCCGCAGCGCACTACCTTCGCCCCCCTTGCGCCGCTCGTGCTTGGGTGC
CCTGAAATCGTGCCGCAGCGACAAAACTGCACCTACCGTATCACTGCGAC
ATGTAACCTCAGGCCCCCGCGTGCCATTGGCCGCAATGGCAAGGGGGCCA
GCACTCTTTGCTGTGGAGCTGTGCCACGATTCAACGGATCCCTGGTGGTG
ATGGGCATGGGCGTATCATGCGTCGCGTCGTGACACTGAGTTTTAGTACG
GGTGAAGGTGAGTGTTCGGTTCAAGGTCAGAGCAGACGTCAGCGCTCTAC
CTAAAAAATTCCCACGCATTCTGCAGCGTCCATACCCCTCGCAATTGAGC
ACCCCGCCCCCGGCTCCCCCCACCTCAATGGACTCCCCCCCCTCCTCCCC
CCTAGCACCCCCCATCTCATTTGACCCCCCCCCCCCCTCGCCCTCCCCGC
TCCACCCGCGCGCTCTCCGCCCCCGCAGTGCTCGCCTGGATGTGGCTGGT
GTGCATCTTCCAGGCCTTCGAGGAGCTCGTCTCGGCACTGTCGGAGCCCA
AGGGACCCCCCCCCGAGGCCGTGGACGATATCTTGCTCCCCCTCATAACC
GTCGTATCTGTAACTGTCGTGTTCCTGCCGCTTCTCGTGGCAACGCTCGT
CGCGGCGGGGGTCAGCGAGGCGGGGCTCGCGGCGGGGGGCGCGGGGGGGG
CGGGGGAGGCGGCGTCGCTGCGGCCGATGGCGGGCCCGGTGATGATTGTG
CGGCAGTCGAGGTGAGTGCTTTTCAGTGCTTTTTGGAGTGTCTCCACTTG
GGTTGCGAATGCCCTGCCATTGCGAACACTGCATTGTGCAGCAGCCGAGG
CTGGTTGTGAGCCGCGTTGAGAGCTTCACTGGTGTTGCGGCTAACGCAAG
CACCGTTTCATGCGGTAGCCGGGATCAGGTCCGTTCCACTCTGAGCGAAT
ATTTCACGGACATTGCAAATGCTGTGAATACAAACACTCCATCTTGTGGC
AGTGGAGGCCGGTTGTGCGCCGCCTATGAAGTCCCCGCTTGCAAACGCCG
TGCTATAAGCGCTGATGCCGTCACGGGTCAATGTGGCGCTGAGCTCTGAC
CACGCCTCATGGCCATGCAGGCTTGTGTATACCGCTCATCATGAACTCAG
TCGTGCATCAGCAGTGATGGTGAAGTCGATGACGCCGGACCCCCCTTGCA
CCACTGAGATAGCGCTGCACCAATGGCCAACGGTCATCAACAAGGCTCAG
AGACCCCCGCTCTTCCCCCTGCACGTGGTGTTTGCAGTACCTACTTCAAG
CGCGCTACGGAGTCCCTTCTGGACGCGAGTGCGGCCGCGGCGGAGGGGGA
TCTGGAGGCGCACTGGGGGGGCGAAGTCGCAGGGGACGAGCGGCCAGGGG
CGGCGGCGGCGGCAGCGCCCGCAGCAGCAGCGGCGGCGGCAGAAGGGGAG
CCGAAGGGCGCCAGCTTTGCGGACAAGCTTTGCTATGTGTGCGAGGTGAG
CTGAGCGCTGTTTCACAGACAGTTACTTTGTGCTGATGACAGTTACATCA
TGTGCTGACACTTACATGCTAATAGTTGAAGCTGAAGTGGGCTGAGCGCA
ACGCTGCGAAAGCGTTCTCAGGCCGGCAGCATTGCTGGTGGTTTTATGCC
GATGCTTGGCGCGACGTGCGTGCATCGGTCACTGAGCGCTCCTGCGCAAC
GAGACGCCACCTGTGCGATGCTTGAGCTCTACAAACAAGTGTGCGCCCAG
GTGTTGTCGATGCAGCGCATCTCGGTCCCTCAAGTCATACAGGTACTGAG
ATGCGTTGCATCGACCACACCTGGACGCACAGGTGCAGGGATGTGTACAC
AAGCTGTGGCCGCAAACAGTGGCCATCAGACGGCAGCGTGCTAGCATCAC
CACAGACTGAGCGGTGTGGTGTGCCCAAACCGCCGGCCCTGCGTGTAGCA
GTCCGCCGCTGCGTGCTGTGTCCGACTGCTCTGTGTAGCTCTGTTGCGGC
CATGTTGCAAAGGGTGGCAAGCTCTTTCTCGTGCTCATCAAGGACCTGAT
CGCCTCTCGCCTCAGGTGCATGATGCCCTTGGCACCCGTTGATGTTGTGG
ATTTGAAGCAAAAGCCATGTGTAGCCAGGCGTTTTCTCATGCAGACTGCG
CATGGCACACATTGCAACCCCTGTGGCCAACATGCACCCTCCTCGCTTGT
GCAAAATGTTGTACTTCATAGTACTTCAACTCACGTGCTCCGTGTGGCGA
CTCGCCGCTGCAGGGAAGACCGGCAAACGCGGTTCTGCTGGAATGCGGCC
ACGCAGGCATCTGCTACGAGTGCGGGCAGGGCCTGGTGAAACAGCGGCGG
GAGCGCTCGTGCCCCATCTGTGAGTGATGATGGCAACATGTACCAAGTAG
TACGAAGTTTGAGTGTTTGCTTAGGGCGCGAATGGCCCAGGTAGATGTCC
AGCTTTGCTGCCAGAATCTACATGTATCTGTATCTTGTGAACACCTTGGC
AGCGGACTTTAGCGTCTCAATGCGCTCCGACGATCACTTTTCAGCGACAT
CGACAAGTCATCACGTACTCGTCGCGAGGTGCGGTCTGGAGGGCCTCTGC
AGCCATTATCTGTCACCTTGGCGTTCATCGTACAGGCACTGAGATGTGTG
GCACCGACAACACGTGGGCACACACCGCATCAGCAGCGCTCAATCATGAG
AGACACACAGCATCTGTGATGCGCCACTGATGCTCGCAGACCGTGCAGCT
ATGCATGCAGTACGCCAGTGCACAGACGCTCATCATGGCGCTCGTTCATG
CAGGCCAAGTGATAGCGCGTGCTGTGCTGGGTGTGCGTCACTGTATAGTA
CACGCCACCACTCTTTGAACGCATCTGATTCGCCATCTGGAGACAGACCC
AGCAACGGCGCTGCGCTATGACTGAGCCAACACAAGTCACGAATTCTTGT
GTGCTGAGGCCCAGATGTCACCGGGCATCAGCAACTCATTCCTCACTCCG
AAGCGAATTCTTGTGTGCTGAGGCTCAGATGTCACTGAGCGTCACCCATT
CCTTGCCCCTGAGGATCGATGTGCGCAGCCTGCGCACGGCAGGAGCACCA
TCATTGCCGCTTGGACCTCCCTCAACCACATTCCGAGCTCCCGGTCTGGG
TCAGCCGCGCGTGCGCGCCGCAGACCCAAGCCGCAGCGTGGCTGTGCGTT
CAAGTGTTGATGATACAACGCATCTCGGTACCTGTCGTACAGGCACCGAG
ATGCAGGTACCGAGATGCGTTGTATAGGTACCGAGATGCGTTGCGTCGAC
ATCACCTGGGCGCACGTGCCGTCTCACTGTACCCACCTACCCTGCCTTAA
TATACCTACCCCCTGCCCTCGCTGCGTGCTGCTGCGCGCAGGCCGCGTCA
CCATCGAGCACATTGTGCGCCTGCCGGACCACGCGCGCTGCCGCATCGGG
CAGCCCGTGCAGTCGCAGGAGGGCATGAGCGTTAGCGTCGCCCCCCCGCC
CCCCACCCCCGGCGTGCCGGAGGCCGCATCCATCCCCCCCGCGCTCGCCG
CCGCGCTGCAGAACCCCCCCCAAGCGGCAGCGGGGGCTCAGCAGGGGGCG
GCTGGCGATGCGGCGGCGGCGGCGGGGGGCGAGGCAGCTGCGCAGGACGG
CGGGGGGGATGTGGTGCCCCCCGCGCAAGGGGGGGGGGCGGCGAGGGGGG
CGACGGCCCCGACATGACGGAG back to topCoding sequence (CDS) from alignment at Contig_32:508598..516019+ >mRNA_5216 ID=mRNA_5216|Name=jgi.p|Trimin1|348857|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1701bp|location=Sequence derived from alignment at Contig_32:508598..516019+ (Tribonema minus UTEX_B_3156 ) ATGGACCTGCCGGCGGCATTGAATTTGTCAGCCGAGCGGCGGGAGCGGCT CCTGAACAGGGCCAACAGGGAAATGCATGATGCCAACCTCAGCGAGCCGC GGTACTGGTGGTCAGGGGTGGCTACGATCACGGCGGAGCTGCTGCTGTAC GACCTCTTCCTGATACTGCTGCTGGTGAAGCTGGATATGGACCCGGAGCT GCCGTGGTTTGTGGTGGCGCTGCCGATATGGATCACCATCACGCAAGCAG CGATCCGCGACGTCGTGCGCTACACGCTGCGGCGCGAGGCCGCGCGCATG ACGGCGCACTACCTCGCCTTCCGCATCGGCCACGACGTCTGCATCAACGT GGCAGTGCTCACGTCAGTGCTCCGCCTCGGCGGCGCGATCCCCGCCTCCG TGCCGTGGGTCGTGGTGCTGGTGCCGCTGTGGGTGGACGCCGTCGCGTGC AGCACGTATCTCGCGCTCGCGCCGGTGCCGCCGCACCTGGATGATGTTGC CGCGCGCGACTACCGCGGCAACATGTGGAACGCCGCGCTGTTTCACCTGG GGGCGTTCGGCCTGCAGGCGGGGCTCATCGCCACCAAGGTGGACGGCATC CTCCACGGCTCCTGGTCCAACGTCTTCATCCCCGCCTTCCTCGCGCTCAT CGTTCTGGTCATTGCGCTCGCCGGCACGACGCTCCACCTCATGGGCGTCT TCTGCCCCATGTGCCTGCGCCTGCCGTCGCTGTCGCGCCCACAGCGCGTC ATCTTCGCCTCCCTCGCGCTGCTCGCACTGCTCGCCTGGATGTGGCTGGT GTGCATCTTCCAGGCCTTCGAGGAGCTCGTCTCGGCACTGTCGGAGCCCA AGGGACCCCCCCCCGAGGCCGTGGACGATATCTTGCTCCCCCTCATAACC GTCGTATCTGTAACTGTCGTGTTCCTGCCGCTTCTCGTGGCAACGCTCGT CGCGGCGGGGGTCAGCGAGGCGGGGCTCGCGGCGGGGGGCGCGGGGGGGG CGGGGGAGGCGGCGTCGCTGCGGCCGATGGCGGGCCCGGTGATGATTGTG CGGCAGTCGAGTACCTACTTCAAGCGCGCTACGGAGTCCCTTCTGGACGC GAGTGCGGCCGCGGCGGAGGGGGATCTGGAGGCGCACTGGGGGGGCGAAG TCGCAGGGGACGAGCGGCCAGGGGCGGCGGCGGCGGCAGCGCCCGCAGCA GCAGCGGCGGCGGCAGAAGGGGAGCCGAAGGGCGCCAGCTTTGCGGACAA GCTTTGCTATGTGTGCGAGGGAAGACCGGCAAACGCGGTTCTGCTGGAAT GCGGCCACGCAGGCATCTGCTACGAGTGCGGGCAGGGCCTGGTGAAACAG CGGCGGGAGCGCTCGTGCCCCATCTGCCGCGTCACCATCGAGCACATTGT GCGCCTGCCGGACCACGCGCGCTGCCGCATCGGGCAGCCCGTGCAGTCGC AGGAGGGCATGAGCGTTAGCGTCGCCCCCCCGCCCCCCACCCCCGGCGTG CCGGAGGCCGCATCCATCCCCCCCGCGCTCGCCGCCGCGCTGCAGAACCC CCCCCAAGCGGCAGCGGGGGCTCAGCAGGGGGCGGCTGGCGATGCGGCGG CGGCGGCGGGGGGCGAGGCAGCTGCGCAGGACGGCGGGGGGGATGTGGTG CCCCCCGCGCAAGGGGGGGGGGCGGCGAGGGGGGCGACGGCCCCGACATG A back to top
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