mRNA_5156 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A836CDE2_9STRA (GRAM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE2_9STRA) HSP 1 Score: 160 bits (406), Expect = 3.310e-50 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1
Query: 1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR
Sbjct: 1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 77
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: F0Y4G3_AURAN (GRAM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4G3_AURAN) HSP 1 Score: 111 bits (278), Expect = 1.370e-30 Identity = 45/77 (58.44%), Postives = 64/77 (83.12%), Query Frame = 1
Query: 1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
+DFSCA++ ++L+HGRLY+T + FYSN+FGFEK I+IP++H+ + + TA+FIPNAIA+ T+R+ YVFRSFWDR
Sbjct: 1 RDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPYSHITCITKEYTAVFIPNAIAVITARKEYVFRSFWDR 77
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI) HSP 1 Score: 120 bits (301), Expect = 5.270e-30 Identity = 51/77 (66.23%), Postives = 66/77 (85.71%), Query Frame = 1
Query: 1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
+DFSCAV+SR+L+HGR+Y+T + FYSN+FGFEKII+IPF H+R + + TALFIPNAIAI TS++ Y+FRSFWDR
Sbjct: 35 EDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPFCHMRCITKEKTALFIPNAIAIITSKKEYIFRSFWDR 111
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE) HSP 1 Score: 120 bits (301), Expect = 5.340e-30 Identity = 51/77 (66.23%), Postives = 66/77 (85.71%), Query Frame = 1
Query: 1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
+DFSCAV+SR+L+HGR+Y+T + FYSN+FGFEKII+IPF H+R + + TALFIPNAIAI TS++ Y+FRSFWDR
Sbjct: 74 EDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPFCHMRCITKEKTALFIPNAIAIITSKKEYIFRSFWDR 150
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A8J2ST97_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST97_9STRA) HSP 1 Score: 113 bits (283), Expect = 6.260e-28 Identity = 47/77 (61.04%), Postives = 65/77 (84.42%), Query Frame = 1
Query: 1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
+DFSCA++ ++L+HGRLY+T + FYSN+FGFEK I+IP++HV V + +TA+FIPNAIA+ T+R+ YVFRSFWDR
Sbjct: 62 RDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPYSHVTCVTKENTAVFIPNAIAVITARKEYVFRSFWDR 138
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A7S2STC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STC3_9STRA) HSP 1 Score: 109 bits (273), Expect = 2.180e-26 Identity = 45/77 (58.44%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
+DFSCAV+ ++L+HGR+Y+T + FYSN+FGFEK I+IP++H+ V + TA+FIPNAIA+ T++R Y FRSFWDR
Sbjct: 43 KDFSCAVERKILLHGRMYVTDKFICFYSNLFGFEKKIKIPYSHIACVTKEYTAVFIPNAIAVITAKREYFFRSFWDR 119
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A7S3NLX8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLX8_9STRA) HSP 1 Score: 108 bits (271), Expect = 5.910e-26 Identity = 43/77 (55.84%), Postives = 64/77 (83.12%), Query Frame = 1
Query: 1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
+DFSCA++ ++L+HGRLY+T + FYSN+FGFEK I+IP++++ + + TA+FIPNAIA+ T+R+ Y+FRSFWDR
Sbjct: 166 RDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPYSYITCITKEYTAVFIPNAIAVITARKEYIFRSFWDR 242
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: W7TDU9_9STRA (Gram domain-containing protein 1a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDU9_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.100e-23 Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 4 DFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
D SCAV+S++L+HGR+YIT + FYSN FGFEK I+IPF+ VR +++ +TAL IPN I I T + Y FRSFWDR
Sbjct: 119 DASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDR 194
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A482S830_9ARCH (GRAM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S830_9ARCH) HSP 1 Score: 88.2 bits (217), Expect = 1.810e-21 Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 1
Query: 4 DFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITT 192
DFSCAV+S VL+HGR+YI+ + FYSN+FG EK IRIP++H++ + + +TA+ IPNAIAI+T
Sbjct: 6 DFSCAVESTVLLHGRMYISTRFICFYSNLFGLEKKIRIPYSHIKNITKENTAMVIPNAIAIST 68
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Match: A0A7S1U683_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U683_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.610e-19 Identity = 32/76 (42.11%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 4 DFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARASTALFIPNAIAITTSRRAYVFRSFWDR 231
DFSC+V+S++ +HG +Y+T + FYSN FG+EK I +P+ + +++ S ++F+ + I+T+++ YVFR+FWDR
Sbjct: 43 DFSCSVESKMTLHGHMYVTTRFICFYSNFFGYEKKILLPYKTINCISKTSDSVFLSPGVEISTAKQGYVFRNFWDR 118 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152047 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5156 ID=mRNA_5156|Name=jgi.p|Trimin1|152047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_32:22709..23688- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGGACTTCAGCTGCGCAGTGCAGAGCCGCGTACTCATGCACGGCCGCCTback to top protein sequence of jgi.p|Trimin1|152047 >Trimin1|152047|gw1.32.181.1 ID=Trimin1|152047|gw1.32.181.1|Name=jgi.p|Trimin1|152047|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=77bp QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHVRGVARAback to top mRNA from alignment at Contig_32:22709..23688- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5156 ID=mRNA_5156|Name=jgi.p|Trimin1|152047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=980bp|location=Sequence derived from alignment at Contig_32:22709..23688- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_32:22709..23688- >mRNA_5156 ID=mRNA_5156|Name=jgi.p|Trimin1|152047|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=231bp|location=Sequence derived from alignment at Contig_32:22709..23688- (Tribonema minus UTEX_B_3156 )back to top |