mRNA_5188 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Match: A0A836CFX7_9STRA (Plastidic triose-phosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX7_9STRA) HSP 1 Score: 745 bits (1924), Expect = 2.410e-270 Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 1
Query: 64 MRLRALLPLAVVALAGASTLAPPRPEAIGTHVHAELQPRHHHAEQGVQLTQHHHITAIVSDVEDVREQEQPLQQQQQRPPLLSPARKQKAKVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQKRLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRYS 1248
MRLRALLPLAVVALAGASTLAPPRPEAIGTHVHAELQPRHHHAEQGVQLTQHHHITAIVSDVEDVREQEQPLQQQQQRPPLLSPARKQKAKVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQKRLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRYS
Sbjct: 1 MRLRALLPLAVVALAGASTLAPPRPEAIGTHVHAELQPRHHHAEQGVQLTQHHHITAIVSDVEDVREQEQPLQQQQQRPPLLSPARKQKAKVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQKRLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRYS 395
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Match: A0A6H5JZK6_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZK6_9PHAE) HSP 1 Score: 342 bits (878), Expect = 3.700e-111 Identity = 186/312 (59.62%), Postives = 227/312 (72.76%), Query Frame = 1
Query: 322 KQKAKVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAP-VLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQK---RLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRY 1245
K +A+V YF LWYALN+ YNI NK+ LNALPLP ++ QLG G++WVG QWL+R R P L R+ PVA FHGGGQ+ATVLSLGAGAVSFTH+VKA EP FSALVAAV F +F+ QVYA+LLPVV GV++ACAKE+NFSWVSF+AAM+SNL FA RAN+SK LM + G + ANLY L+T+V+FV+ P A + GPAW +++ L V LSG++HYLNNEVMYLALGSVHP TLAVGNT+KRVFI+VASL+VF+ PI+ G GSA+A+ GV +YS ARQ Y
Sbjct: 95 KDRARVLGYFGLWYALNVWYNIVNKKVLNALPLPSSIAVLQLGIGSLWVGTQWLVRARTPPGKLAATGAARLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRHIFRWQVYASLLPVVAGVSLACAKEINFSWVSFLAAMASNLLFACRANFSKALMTRPPFEDGASTSSANLYGLVTIVSFVVFAPFAALTGWSKWGPAWESAMEN-----GHQAKALVLSVLLSGVSHYLNNEVMYLALGSVHPTTLAVGNTMKRVFIVVASLIVFKTPISRLGMVGSAIAVGGVLVYSLARQHY 401
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Match: A0A7S4DBS7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBS7_HETAK) HSP 1 Score: 333 bits (855), Expect = 1.610e-108 Identity = 184/304 (60.53%), Postives = 219/304 (72.04%), Query Frame = 1
Query: 334 KVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQKRLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRY 1245
KV YF LWY LNIAYNI NK+ LN +PWTV QLG G ++ A W +RAAP L +++ + PVA +H GQ+ TV+SL AGAVSF HIVKA EP FSALVAAV Q FKPQVYA L+PVV GVA+AC E++FSW SF AAM SN FA RAN+SK LM LG+N+ ANLYA++T+ AF+L PLALAAEGA + W + V AG+ + +LA + LSGL HYLNNEVMYLAL +VHP+TLAVGNT KRVFIIVASLVVFRNPIT GA GSAV IAGV +Y+ ++ Y
Sbjct: 55 KVLGYFGLWYVLNIAYNIVNKKVLNKFQVPWTVAAVQLGIGGLYALASWATPLRAAPQLSVKSMKAIAPVAFYHSSGQLLTVVSLFAGAVSFAHIVKALEPFFSALVAAVFLKQYFKPQVYATLVPVVAGVALACYSEVDFSWASFAAAMGSNAAFACRANFSKHLMGADLGKNMSAANLYAVVTLGAFLLLAPLALAAEGAALPREWARAVA--AGITEK---KLATNILLSGLFHYLNNEVMYLALDNVHPITLAVGNTAKRVFIIVASLVVFRNPITATGAIGSAVGIAGVLVYALTKEHY 353
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Match: A0A4D9D5R1_9STRA (TPT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5R1_9STRA) HSP 1 Score: 334 bits (857), Expect = 3.570e-108 Identity = 183/303 (60.40%), Postives = 224/303 (73.93%), Query Frame = 1
Query: 346 YFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSK--VLMQKRLGRN-VEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRY 1245
YFALW+ALN+ YNI NKR LN LPLP+TV TAQLG GAV+V WLLR+RA+P + L+ +L +A +HG GQ+ TVLSLGA AVSFTHIVKA EP FSALVAAV F QVFKPQVY +LLPVV GVAVACA +++F W++F+ AM+SNL FALRAN+SK + ++ G++ + PAN+Y L+T++AF L LPL EG P+W + + G L + LSGL HYLNNEVMYLAL +VHP+TLAVGNT KRVFII+ASL+VFRNPIT GA GS V IAGV +YS +Q Y
Sbjct: 107 YFALWFALNVYYNIVNKRVLNTLPLPFTVATAQLGIGAVYVSLSWLLRVRASPRISTTGLKDLLSIAFYHGSGQLFTVLSLGAAAVSFTHIVKALEPFFSALVAAVCFKQVFKPQVYLSLLPVVSGVAVACANDVSFGWLAFLTAMASNLAFALRANFSKGALFRYRKEGKSSMSPANVYGLVTILAFFLLLPLTCLWEGVDWRPSWRVATEKIEGTT------LVHQLLLSGLFHYLNNEVMYLALDNVHPITLAVGNTAKRVFIILASLLVFRNPITLTGAVGSGVGIAGVLIYSLTKQYY 403
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Match: B7G197_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G197_PHATC) HSP 1 Score: 310 bits (794), Expect = 1.940e-98 Identity = 171/306 (55.88%), Postives = 210/306 (68.63%), Query Frame = 1
Query: 334 KVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQK--RLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRY 1245
KV FYFALWYALNI YNI NK+ LN LP P TVG+ Q G G +V W L++R AP L V V +H GQ+A+++SLGAG VSFTHIVKA EP FSA+V+A+AFG KPQVYA LLPVVGGV AC KE +FSW++F AM SNL FALRA SKV M +G N+ N++A++T+ AFV +P+AL EG G W + + + A L + +SG+ HYLNNEVMYLALG+VHPVTLAVGNT+KRV I+VAS++VF+N ITP A GSA+ IAGV LYS +Q Y
Sbjct: 108 KVGFYFALWYALNIVYNILNKKLLNVLPSPVTVGSIQFGVGCFYVLLVWALKLRPAPTLTSQGKAAVQKVGFWHCTGQLASMVSLGAGPVSFTHIVKALEPFFSAVVSALAFGTWMKPQVYATLLPVVGGVGYACLKERSFSWLAFYMAMGSNLAFALRAVLSKVAMSSGANVGTNISSTNVFAMVTLAAFVWSIPMALVTEGRSFGTLWNKALSQ------QSAADLCKALFVSGMFHYLNNEVMYLALGNVHPVTLAVGNTMKRVIIMVASVMVFQNEITPQAAVGSAIGIAGVLLYSLTKQYY 407
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Match: A0A1E7F950_9STRA (TPT-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F950_9STRA) HSP 1 Score: 301 bits (772), Expect = 1.770e-96 Identity = 163/309 (52.75%), Postives = 211/309 (68.28%), Query Frame = 1
Query: 325 QKAKVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQ--KRLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRY 1245
Q+ ++ YFA WYALN+ YNI NK+ LN LP P VG+ Q G GA++ W+ + R P L G + V V A+H GQ++T++SL AG VSF+HIVKA EP FSA+V+ F KPQVYA L+PVVGGV AC KELNFSW++F AAM+SNLFFALRA SK +Q K G N+ N++ L+T+ AF+L +P+AL EG+ W ++ + ++Q + +SGL HYLNNEVMY+ALGSVHPVTLAVGNT+KRVFI+VAS++VFRNPI+ GSAV I+GV LYS +Q Y
Sbjct: 2 QRLEIGGYFAAWYALNVVYNIINKKVLNVLPAPLIVGSIQFGIGALYCALVWIFKFRPFPKLTAGGTKAVASVGAYHMLGQLSTMISLQAGPVSFSHIVKAVEPFFSAIVSGFYFNSWMKPQVYATLIPVVGGVGYACLKELNFSWLAFGAAMASNLFFALRAVLSKSALQSGKATGTNLTAPNMFGLVTVTAFLLSIPVALIREGSGFSALWLAAMEQV-----ESKSQFVRAIFISGLFHYLNNEVMYMALGSVHPVTLAVGNTMKRVFILVASVLVFRNPISMQAGIGSAVGISGVLLYSLTKQYY 305
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Match: A0A835ZAU1_9STRA (Triosephosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU1_9STRA) HSP 1 Score: 295 bits (756), Expect = 2.100e-93 Identity = 161/307 (52.44%), Postives = 211/307 (68.73%), Query Frame = 1
Query: 331 AKVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQKRLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALS-GLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRYS 1248
AKV YFALWY LNIAYNI NK+ LNA+PLPWT+ TAQLG G +++ WLLR+RAAP L ++ + + A H G + TV+SLGAGAVSFTHIVKAAEPLFS L++A+ F QVY LLP+V GVA+A EL FSWVSF+ AM SN F+LRA +SK+ M K G+N+ P NLYA++T++AF+ LPL L EG+ + A+ G+ G A W + GL++YL NEV +LALG VHP+T AVGNT+KRV I++AS++ F + P AGSA+A++G LYS A+ +Y+
Sbjct: 74 AKVGSYFALWYILNIAYNIFNKKMLNAVPLPWTMATAQLGTGLLYILPVWLLRLRAAPQLSLDNIKGLTGITACHTAGHIMTVISLGAGAVSFTHIVKAAEPLFSTLMSAIVLKSTFPWQVYMTLLPIVAGVAIASMTELTFSWVSFLNAMGSNTAFSLRAIFSKMAMNKPQGKNMTPPNLYAVLTIMAFIGVLPLTLLVEGSKIQSAFETGIAGYVG-----GANKFWTHFFACGLSYYLYNEVAFLALGQVHPITHAVGNTIKRVVILIASVIAFGTKMRPMSIAGSAMAVSGTLLYSLAKSKYA 375
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Match: A0A7S4NB18_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NB18_9STRA) HSP 1 Score: 295 bits (755), Expect = 6.440e-93 Identity = 159/306 (51.96%), Postives = 203/306 (66.34%), Query Frame = 1
Query: 328 KAKVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQKRLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRY 1245
+ K+ YF LWYALN+ YNI NK+ LN +P P TVG+ Q G GA++ W L IR AP L V V +H GQ+ +++SLGAG VSFTHIVKA EP FSALV+A+ FG KPQVYA L+PVVGGV+ AC KE +FSW++F AM SN+ FALRA SK M +G N+ NL+ L+T AF + +P L EG W + + + + QLA + LSGL HYLNNEVMYLAL +VHPVTLAVGNT+KRVFI+VAS++VFRNP++ A G+ + I+GV +YS +Q Y
Sbjct: 85 RLKIGGYFGLWYALNVIYNIINKKVLNVVPAPLTVGSIQFGIGALYAAILWALSIRPAPRLTSKGRDSVWSVGFYHSAGQLLSMISLGAGPVSFTHIVKALEPFFSALVSALVFGTWMKPQVYATLIPVVGGVSYACLKERSFSWLAFWTAMGSNVAFALRAVMSKSAMTSYIGENINSVNLFGLVTWAAFFISIPTFLLGEGISFLELWSKAIGEGSDTTM---PQLARSLVLSGLFHYLNNEVMYLALSNVHPVTLAVGNTMKRVFIMVASVIVFRNPVSLQAAIGAGIGISGVLVYSLTKQHY 387
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Match: A0A7S1FZ62_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ62_9STRA) HSP 1 Score: 293 bits (749), Expect = 3.650e-92 Identity = 164/318 (51.57%), Postives = 212/318 (66.67%), Query Frame = 1
Query: 301 PLLSPARKQKAKVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLE---RGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQKRLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRY 1245
P + PA KV YFALWY LNI YNI NK+ LNALPLP VGT QLG G+ +V W +R AP+L +GAL++V +H GQ+ +++SLGAGAVSFTHIVKA EP FSA V+A+ G+ +PQVYAAL+PVVGGVA AC +L+F+W+ F +AM SNL FALRA SK M +G P N++ ++T+ +F+L LP+A ++ + ++G +D + Q + +SGL HYLNNEVMY+AL SVHPVTLAVGNT+KRVFIIVAS++ F +T GSAV IAGV LYS +Q Y
Sbjct: 75 PTIPPA----LKVTVYFALWYILNILYNIQNKKILNALPLPLAVGTLQLGVGSTFVAMLWATGLRKAPILTPNGKGALKKV---GFYHSAGQLLSMVSLGAGAVSFTHIVKALEPFFSAAVSALYLGKWMRPQVYAALIPVVGGVATACFSDLSFTWLGFYSAMGSNLMFALRAVMSKAAMTSPIGEETTPTNVFGVVTIYSFLLALPVAFLSDWS----SFGSLFRDAITSTGKSNLQFVKDICVSGLVHYLNNEVMYMALDSVHPVTLAVGNTMKRVFIIVASVIAFNTKLTTQTITGSAVGIAGVLLYSLTKQYY 381
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Match: A0A6U3NJ43_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NJ43_9STRA) HSP 1 Score: 293 bits (750), Expect = 5.900e-92 Identity = 160/313 (51.12%), Postives = 206/313 (65.81%), Query Frame = 1
Query: 325 QKAKVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAPVLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQKRLGRNVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAG------VVARPRAQLAWLVALSGLTHYLNNEVMYLALGSVHPVTLAVGNTLKRVFIIVASLVVFRNPITPAGAAGSAVAIAGVQLYSWARQRY 1245
Q+ K+ YFALWYALN+ YNI NK+ LN LP P TVG Q G GA++ WL ++R P L + + +H GQ+ +++SLGAG VSFTHIVKA EP FSA V+A+ FG+ KPQVYA+L+PVVGGV AC KE +FSW++F AM SNL FALRA SK M +G N+ NL+ ++T AF +P+AL EG W + +A V A +L + +SGL HYLNNEVMYLALG+VHPVTLAVGNT+KRVFI+VAS++VFRNP++ GSA+ I+GV +YS +Q Y
Sbjct: 89 QRLKIGGYFALWYALNVIYNILNKKVLNILPAPLTVGAIQFGVGALYAMTLWLTKLRTPPKLTPEGRKISNNIGIYHMSGQLLSMVSLGAGPVSFTHIVKALEPFFSAAVSALVFGKWMKPQVYASLIPVVGGVGYACLKERSFSWLAFWTAMGSNLAFALRAVMSKAAMIGNVGENITSPNLFGIVTWFAFFQSIPVALIGEGFSFLDLWSKATTAVAASEGVEAVEASDPMELTRALIISGLFHYLNNEVMYLALGNVHPVTLAVGNTMKRVFIMVASIIVFRNPVSVQAGIGSAIGISGVLVYSLTKQYY 401 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|57890 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5188 ID=mRNA_5188|Name=jgi.p|Trimin1|57890|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1320bp|location=Sequence derived from alignment at Contig_32:295035..299021+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCTGGCTGGAGGACGCACACATACGATTAGAGCACGCTGAAGCCAGTCAGback to top protein sequence of jgi.p|Trimin1|57890 >Trimin1|57890|CE57889_68 ID=Trimin1|57890|CE57889_68|Name=jgi.p|Trimin1|57890|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=396bp MRLRALLPLAVVALAGASTLAPPRPEAIGTHVHAELQPRHHHAEQGVQLTback to top mRNA from alignment at Contig_32:295035..299021+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5188 ID=mRNA_5188|Name=jgi.p|Trimin1|57890|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3987bp|location=Sequence derived from alignment at Contig_32:295035..299021+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_32:295035..299021+ >mRNA_5188 ID=mRNA_5188|Name=jgi.p|Trimin1|57890|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1188bp|location=Sequence derived from alignment at Contig_32:295035..299021+ (Tribonema minus UTEX_B_3156 )back to top |