mRNA_18971 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354641
Unique NamemRNA_18971
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354641 vs. uniprot
Match: A0A835YVM9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM9_9STRA)

HSP 1 Score: 196 bits (497), Expect = 3.770e-62
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 2 
Query:   44 MPVYAGVDLATFFGWGRWYYFLPEACAFGGLSVPTAGVQALRVKAVEEASGKTGGHGAEDQQGHRGGGERHQGRLQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGSFSRRTAGRLACDIATSPAGL 436
            MPVYAGVDLATFFGWGRWYYFLPEACAFGGLSVPTAGVQALRVKAVEEASGKTGGHGAEDQQGHRGGGERHQGRLQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGSFSRRTAGRLACDIATSPAGL
Sbjct:    1 MPVYAGVDLATFFGWGRWYYFLPEACAFGGLSVPTAGVQALRVKAVEEASGKTGGHGAEDQQGHRGGGERHQGRLQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGSFSRRTAGRLACDIATSPAGL 131
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354641 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YVM9_9STRA3.770e-62100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_311contigContig_311:28333..29414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354641|estExt_Genemark1.C_Ctg_3110003
Hectar predicted targeting categoryother localisation
TranscriptId354963
TrackFilteredModels1
ProteinId354641
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354641gene_18971Tribonema minus UTEX_B_3156 geneContig_311 28333..29414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354641Trimin1|354641|estExt_Genemark1.C_Ctg_3110003Tribonema minus UTEX_B_3156 polypeptideContig_311 28376..29413 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18971_1exon_18971_1Tribonema minus UTEX_B_3156 exonContig_311 28333..28538 +
exon_18971_2exon_18971_2Tribonema minus UTEX_B_3156 exonContig_311 28887..28952 +
exon_18971_3exon_18971_3Tribonema minus UTEX_B_3156 exonContig_311 29138..29245 +
exon_18971_4exon_18971_4Tribonema minus UTEX_B_3156 exonContig_311 29358..29414 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_18971UTR5_18971Tribonema minus UTEX_B_3156 five_prime_UTRContig_311 28333..28375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18971CDS_18971Tribonema minus UTEX_B_3156 CDSContig_311 28376..28538 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18971UTR3_18971Tribonema minus UTEX_B_3156 three_prime_UTRContig_311 29414..29414 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18971 ID=mRNA_18971|Name=jgi.p|Trimin1|354641|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=437bp|location=Sequence derived from alignment at Contig_311:28333..29414+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCTGCGGCACGGCGAAACTGCAGAGCCCCCCAGCACCGTTGAATGCCGG
TATACGCAGGTGTAGACTTGGCAACCTTCTTCGGCTGGGGCAGATGGTAC
TATTTTCTGCCTGAAGCATGTGCCTTCGGTGGCCTCAGCGTACCGACCGC
AGGCGTACAGGCACTCCGAGTCAAGGCGGTTGAGGAGGCAAGCGGCAAGA
CTGGTGGTCATGGAGCAGAAGATCAGCAAGGACACCGTGGAGGTGGCGAG
CGTCACCAAGGACGGCTACAAGCAGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCCGTTGCTGGCAGCTTTTCTCGCCGCACAGCAGGCCGA
CTCGCATGCGACATCGCAACTTCACCTGCCGGATTGA
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protein sequence of jgi.p|Trimin1|354641

>Trimin1|354641|estExt_Genemark1.C_Ctg_3110003 ID=Trimin1|354641|estExt_Genemark1.C_Ctg_3110003|Name=jgi.p|Trimin1|354641|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
MPVYAGVDLATFFGWGRWYYFLPEACAFGGLSVPTAGVQALRVKAVEEAS
GKTGGHGAEDQQGHRGGGERHQGRLQAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAVAGSFSRRTAGRLACDIATSPAGL
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mRNA from alignment at Contig_311:28333..29414+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18971 ID=mRNA_18971|Name=jgi.p|Trimin1|354641|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1082bp|location=Sequence derived from alignment at Contig_311:28333..29414+ (Tribonema minus UTEX_B_3156 )
TGCTGCGGCACGGCGAAACTGCAGAGCCCCCCAGCACCGTTGAATGCCGG
TATACGCAGGTGTAGACTTGGCAACCTTCTTCGGCTGGGGCAGATGGTAC
TATTTTCTGCCTGAAGCATGTGCCTTCGGTGGCCTCAGCGTACCGACCGC
AGGCGTACAGGCACTCCGAGTCAAGGCGGTTGAGGAGGCAAGCGGCAAGA
CTGGTGGTGAGCTGCAACCCCAGCCCTGTCAAGAAGGCAAAGAAGTCGGT
GGTGCAATCGCACAACTGCTGTAGCTGGCGGCCACACGCTGGCTACTATT
GCTGCAACAAACACCTCCTACCAAGACGCCCTTGCAACTCATGGCAAGTC
AGCAGTGAACAGAGTCGCTCTTCCTGTTGCAAGCAGTGCTTGTGAGCACA
AGGCCATTGTGCCAGATCCACAGTTTGACCATTTGCTCCTTTCAGTGCAT
GTGGATTTACTTCCGCTTGAGGGTCTGAAAACTTTCCTGCACCACGTCGT
ATACAACACATTTTTGGCGCTGCTGCCGCAACCCCCCCCCCCCCCCCCCC
CCAGGTCATGGAGCAGAAGATCAGCAAGGACACCGTGGAGGTGGCGAGCG
TCACCAAGGACGGCTACAAGGTGTACGATGCGGCCATGCTGCAGACCATT
ATTGACAGGCCCTAGCTACGCCGCCGCTGCCTGTACGATGCGGGCAGAAC
ACAAATGATGGTCTCCGTTCCGGCGCCACAGGAATATATATGACACATGC
GACACCTGCCCGCGTGTCTCAGTAAGGTTGAAGACTGTTGCTGCTGCTGC
TGCAGCAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGTT
GCTGGCAGCTTTTGTGCGCCTATGATACATGCCGGGGGCTCTGCGCACTA
CCGTTGACGTGTTGGTTTTTTGAAACATGCAGCAGCTGAGCCTTGCTGTC
TTGGAGGCGCTCTGCGCCCGCGCAGCTCGCCGCACAGCAGGCCGACTCGC
ATGCGACATCGCAACTTCACCTGCCGGATTGA
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Coding sequence (CDS) from alignment at Contig_311:28333..29414+

>mRNA_18971 ID=mRNA_18971|Name=jgi.p|Trimin1|354641|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_311:28333..29414+ (Tribonema minus UTEX_B_3156 )
ATGCCGGTATACGCAGGTGTAGACTTGGCAACCTTCTTCGGCTGGGGCAG
ATGGTACTATTTTCTGCCTGAAGCATGTGCCTTCGGTGGCCTCAGCGTAC
CGACCGCAGGCGTACAGGCACTCCGAGTCAAGGCGGTTGAGGAGGCAAGC
GGCAAGACTGGTGGTCATGGAGCAGAAGATCAGCAAGGACACCGTGGAGG
TGGCGAGCGTCACCAAGGACGGCTACAAGCAGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCCGTTGCTGGCAGCTTTTCTCGCCGCACAGC
AGGCCGACTCGCATGCGACATCGCAACTTCACCTGCCGGATTG
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