Trimin1|348774|estExt_Genemark1.C_Ctg_310030 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348774
Unique NameTrimin1|348774|estExt_Genemark1.C_Ctg_310030
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length357
Homology
BLAST of jgi.p|Trimin1|348774 vs. uniprot
Match: A0A835Z3R5_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R5_9STRA)

HSP 1 Score: 635 bits (1637), Expect = 1.090e-228
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0
Query:    1 MQPVDVDLVLHSEPTVLQPIAGTPDADGHPDAKDAAGAIAPVTFLLCMLQLTVYVYSRRRGAAAVAVTYRSVVLAGEAWRVLAAAACHAHAPHLLLDVLGLWAARRCEVAAGPAAFLARSAVFLVLSQVLFLLVHHQLVTRGVRAALDAPCLGSTGVVIAWMAFAAAQPRAPPYVLPGGIALPVRAALIIVLLINNIVSRRAGAVSSIGGVLAGNVAAKCSGGSLAALGLLDFLCRPYWLGTTLAWGALVLLASVRATTNVPVPFFDAVSLAPPPAADVPARPFDPRDLAMRSAAAKAPVQASAXXXXXXXXXXXXXXCAAMRFEVTVTAVAWCLRRRRTSAAQVALAPLSFHMCT 356
            MQPVDVDLVLHSEPTVLQPIAGTPDADGHPDAKDAAGAIAPVTFLLCMLQLTVYVYSRRRGAAAVAVTYRSVVLAGEAWRVLAAAACHAHAPHLLLDVLGLWAARRCEVAAGPAAFLARSAVFLVLSQVLFLLVHHQLVTRGVRAALDAPCLGSTGVVIAWMAFAAAQPRAPPYVLPGGIALPVRAALIIVLLINNIVSRRAGAVSSIGGVLAGNVAAKCSGGSLAALGLLDFLCRPYWLGTTLAWGALVLLASVRATTNVPVPFFDAVSLAPPPAADVPARPFDPRDLAMRSAAAKAPVQASAXXXXXXXXXXXXXXCAAMRFEVTVTAVAWCLRRRRTSAAQVALAPLSFHMCT
Sbjct:    1 MQPVDVDLVLHSEPTVLQPIAGTPDADGHPDAKDAAGAIAPVTFLLCMLQLTVYVYSRRRGAAAVAVTYRSVVLAGEAWRVLAAAACHAHAPHLLLDVLGLWAARRCEVAAGPAAFLARSAVFLVLSQVLFLLVHHQLVTRGVRAALDAPCLGSTGVVIAWMAFAAAQPRAPPYVLPGGIALPVRAALIIVLLINNIVSRRAGAVSSIGGVLAGNVAAKCSGGSLAALGLLDFLCRPYWLGTTLAWGALVLLASVRATTNVPVPFFDAVSLAPPPAADVPARPFDPRDLAMRSAAAKAPVQASAXXXXXXXXXXXXXXCAAMRFEVTVTAVAWCLRRRRTSAAQVALAPLSFHMCT 356          
BLAST of jgi.p|Trimin1|348774 vs. uniprot
Match: A0A7S2V9M1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9M1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.040e-22
Identity = 80/239 (33.47%), Postives = 127/239 (53.14%), Query Frame = 0
Query:   40 APVTFLLCMLQLTVYVYSR--RRGAAAVAVTYRSVVLAGEAWRVLAAAACHAHAPHLLLDVLGLWAARRCEVAAGPAAFLARSAVFLVLSQVLFLLVHHQLV--TRG--VRAALDAPCLGSTGVVIAWMA-FAAAQPRAPPYVLPGGIALPVRAALIIVLLINNIVSRRAGAVSSIGGVLAGNVAAKCSGGSLAALGLLDFLCRPYWLGTTLAWGALVLLASVRATTNVPVPFFDAVSL 271
            +P+T ++ M  + +YV  R  R GA +V ++Y  VV   E WR+L AA  HA+  HLL +V  +W  R  E   G   +L  S + L+L++     +  +++  TR   +++  D   LG + V+   M   A  +    PY LP G+ +    A +  ++I  +V R+A  +  + G+LAG          + A GLLD+  +PYW+    AWG  VLL S++ATTN+PVPF D V++
Sbjct:   38 SPMTCVVIMSCIAIYVNQRANRIGADSVGISYTRVVKGMEYWRILTAAVSHANFWHLLFNVYSVWNIRLLEWKIGGWEYLCHSMLILLLARTYHFTLLWRVISSTRNPVLQSYADQVSLGYSAVIFGLMTVLATTEENMGPYQLPLGLQVEAPLAPMAAMIITQLVYRQASFLGHLSGMLAG---------VMVASGLLDWCLQPYWVAWGCAWGTAVLLVSLKATTNLPVPFVDYVNI 267          
BLAST of jgi.p|Trimin1|348774 vs. uniprot
Match: A0A7S1CN55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CN55_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.680e-18
Identity = 83/229 (36.24%), Postives = 120/229 (52.40%), Query Frame = 0
Query:   41 PVTFLLCMLQLTVYVY--SRRRGAAAVAVTYRSVVLAGEAWRVLAAAACHAHAPHLLLDVLGLWAARRCEVAAGPAAFLARSAVFLVLSQVLFLLVHHQLVTR-GVRAALDAPCLGSTGVVIAWMAFAAAQPRAPPYVLPGGIALPVRAALIIVLLINNIVSRRAGAVSSIGGVLAGNVAAKCSGGSLAALGLLDFLCRPYWLGTTLAWGA-LVLLASVRATTNVPVPF 265
            PVT LL ++   V+ +  +RR GA  VAV+Y  +V   + WR ++AA  H +A HLL ++  LWA    EVA G A +L  + + L+LS  + +  +  L  R G+R       +G + VV  WM   A         LPGGI LP+  A    LLI  ++ RRA  +  + G+ AG            A G+L +L  PYWL TTL +   L +LAS+R +T++ VPF
Sbjct:   13 PVTSLLVVVCSAVWFHCWNRRIGAENVAVSYDLLVRRRQYWRAVSAAFSHLNALHLLFNMASLWACGAMEVALGSAVYLHVTLLLLLLSTSMAMGGYWLLSKRFGLRRYETQTAVGYSCVVFGWMTIMAQLRPTSSIPLPGGINLPLNLAPFTSLLITQLIVRRASLIGHLAGIFAG---------FFIAWGMLGWL-TPYWLYTTLLFHVTLPVLASLRESTSIRVPF 231          
BLAST of jgi.p|Trimin1|348774 vs. uniprot
Match: D8RTW4_SELML (Rhomboid domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RTW4_SELML)

HSP 1 Score: 60.8 bits (146), Expect = 6.860e-7
Identity = 62/252 (24.60%), Postives = 112/252 (44.44%), Query Frame = 0
Query:   28 GHPDAKDAAGAIAPVTFLLCMLQLTVYVYSRRRGAAAVAVTYRSVVLAGEAWRVLAAAACHAHAPHLLLDVLGLWAARRCE----VAAGPAAFLARSAVFLVLSQVLFLLVHHQLVTR-GVRAALDAPCLGSTGVVIAWMAFAAAQPRAPPYVLPGGIALPVRAALIIVLLINNIVSRRAGAVSSIGGVLAGNVAAKCSGGSLAALGLLDFLCRPYWLGTTLAWGALVLLASVRATTNVPVPFFDAVSLAPP 274
            G P   D     A    +     + +Y+  R  G A V ++Y +VVL G+ WR+L ++  H    HL+ ++  LW+    E    +  G   ++  + + ++LS  L L ++H L+ R  +        +G + VV  WM   A++  +    L G ++LP+  A    L+  +I+  +A  +  + G++ G          L A G +  +   YW  + LAW  L+L  S+  T++    F     +A P
Sbjct:    2 GRPLVYDIIDRPASSCLIALCSAVWLYIQHRSIGYAEVGMSYETVVLQGQYWRILTSSFSHISFLHLVFNMSALWSLGMVEGLKGIGLGVTFYVHYTLLLVLLSAALVLGIYHLLIHRFNLELYKRVSAVGYSCVVFGWMTILASKQPSSKLELFGLLSLPINFAPFESLVFTSIIVPKASFLGHLAGIIVGY---------LIAWGSIQGMTN-YWFVSLLAWMVLLLGLSIHRTSSYQFWFLQIEPVADP 243          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348774 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z3R5_9STRA1.090e-228100.00Rhomboid domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2V9M1_9STRA4.040e-2233.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1CN55_9STRA1.680e-1836.24Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D8RTW4_SELML6.860e-724.60Rhomboid domain-containing protein n=2 Tax=Selagin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035952Rhomboid-like superfamilyGENE3D1.20.1540.10coord: 37..223
e-value: 1.4E-13
score: 52.9
IPR035952Rhomboid-like superfamilySUPERFAMILY144091Rhomboid-likecoord: 39..219
IPR022764Peptidase S54, rhomboid domainPFAMPF01694Rhomboidcoord: 75..218
e-value: 1.5E-7
score: 31.5
NoneNo IPR availablePANTHERPTHR43066RHOMBOID-RELATED PROTEINcoord: 41..240
NoneNo IPR availablePANTHERPTHR43066:SF1RHOMBOID PROTEIN 2coord: 41..240

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:280458..285043 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348774mRNA_7373Tribonema minus UTEX_B_3156 mRNAContig_31 280294..285043 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348774|estExt_Genemark1.C_Ctg_310030 ID=Trimin1|348774|estExt_Genemark1.C_Ctg_310030|Name=jgi.p|Trimin1|348774|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=357bp
MQPVDVDLVLHSEPTVLQPIAGTPDADGHPDAKDAAGAIAPVTFLLCMLQ
LTVYVYSRRRGAAAVAVTYRSVVLAGEAWRVLAAAACHAHAPHLLLDVLG
LWAARRCEVAAGPAAFLARSAVFLVLSQVLFLLVHHQLVTRGVRAALDAP
CLGSTGVVIAWMAFAAAQPRAPPYVLPGGIALPVRAALIIVLLINNIVSR
RAGAVSSIGGVLAGNVAAKCSGGSLAALGLLDFLCRPYWLGTTLAWGALV
LLASVRATTNVPVPFFDAVSLAPPPAADVPARPFDPRDLAMRSAAAKAPV
QASAAAAACPALAAVAALCAAMRFEVTVTAVAWCLRRRRTSAAQVALAPL
SFHMCT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035952Rhomboid-like_sf
IPR022764Peptidase_S54_rhomboid_dom