mRNA_7357 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348766
Unique NamemRNA_7357
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: A0A835Z5C8_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5C8_9STRA)

HSP 1 Score: 563 bits (1451), Expect = 2.830e-199
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 1
Query:    1 MNVPWPCSKLARRYALELALWRGIATEAIGMTFFLQIDAXXXXXXXXXXXXXXXXXFLTITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXVLVYITSGISSXXXXXXXXXXXXXXXXXXXXXXGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVEPRF 1167
            MNVPWPCSKLARRYALELALWRGIATEAIGMTFFLQIDAXXXXXXXXXXXXXXXXXFLTITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXVLVYITSGISSXXXXXXXXXXXXXXXXXXXXXXGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVEPRF
Sbjct:    1 MNVPWPCSKLARRYALELALWRGIATEAIGMTFFLQIDAXXXXXXXXXXXXXXXXXFLTITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXVLVYITSGISSXXXXXXXXXXXXXXXXXXXXXXGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVEPRF 389          
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: A0A836CE69_9STRA (Transmembrane channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE69_9STRA)

HSP 1 Score: 198 bits (503), Expect = 7.430e-57
Identity = 127/338 (37.57%), Postives = 167/338 (49.41%), Query Frame = 1
Query:  178 ITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXVLVYITSGISSXXXXXXXXXXXXXXXXXXXXXXGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAE--------SDKHRFNIKALVEPRF 1167
            IT+IAYN      G D    K+L IA VFG SIF                                    +LVY T+G+S                       GNLNPAVTF+LV+GKR+S  +G+ YI +Q  GA +GT FA               +AG   FN V+GG NI++ GV+  Q  F E      L T ++CLAV++GLS +LW LM  T                 MD  LP  VG  + ++H+V+IPIDGCS+NPARS+G A+++G W  M IFW GPLIGG  AILLWEL++RPPQ + ++         SD+    +  +V  RF
Sbjct:   74 ITVIAYNDDGQLVGIDSD--KQLLIALVFGLSIF------------------------------------MLVYFTAGLSG----------------------GNLNPAVTFSLVIGKRISVARGICYIASQMVGAIVGTAFA-------------LVIAGSDKFNAVNGGANILAVGVSAGQALFAE-----ILSTAMVCLAVIIGLSSELWHLMEKTG----------------MDILLPIAVGTAIVLAHMVLIPIDGCSVNPARSFGAAVISGEWADMWIFWVGPLIGGLVAILLWELILRPPQEVSRSAHTRRSSDASDRPVRRLAKVVSARF 317          
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: A0A835Z4I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I3_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.530e-47
Identity = 122/366 (33.33%), Postives = 167/366 (45.63%), Query Frame = 1
Query:   76 TEAIGMTF---FLQIDAXXXXXXXXXXXXXXXXXFLTITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXVLVYITSGISSXXXXXXXXXXXXXXXXXXXXXXGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVEPR 1164
            T+A G+T    F  +D+                 F   TL++  +   A+ +D GGI+++ I+ +FG  +F                                    VLVY+T+ +S                       GNLNPAVT ALV+GKR+S ++G+ Y+++QC GA  G LFA+              VAG   FN  +GG N +   ++     FG+   GE +CT  LC+ VLVGLS +LW LM   K                +   LP  VG  V +SH+VM+PIDG SINPARS+GPA V G W   A FW GPL+G   A+LLWE V+RPP  +P  +S         L   R
Sbjct:  706 TKAKGVTLKRKFQDVDSFFWRAVLVEGLGVAVFLFCVCTLLSATS---ASDFD-GGIQQILISMIFGLVLF------------------------------------VLVYLTATLSG----------------------GNLNPAVTAALVIGKRISLVRGLCYVVSQCIGAIFGALFAK-------------IVAGPDAFNAANGGSNSLQENIS-----FGQALCGEIICTAFLCVVVLVGLSNELWELMPKAK----------------VHLLLPLAVGGVVAVSHLVMVPIDGTSINPARSFGPAAVAGQWSNHACFWVGPLLGSLVAVLLWEGVLRPPAAVPTEDSSSSSATSSQLENGR 975          
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: A0A835YY46_9STRA (Aquaporin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY46_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.050e-31
Identity = 79/212 (37.26%), Postives = 111/212 (52.36%), Query Frame = 1
Query:  490 NLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESD 1125
            N+NPAV++ L LGKR++  +  LYIIAQC GA +G   A +                ++ F   +GG N+++  V   Q   GE      LCT LL   VL   +  L    Y  +A                   LP+V+GMTV + H  ++P+DGCSINPARS+G A++T  W    +FW GPLIG   A LL+E ++RPP+  PK E++
Sbjct:   95 NINPAVSWGLCLGKRITLKRCGLYIIAQCLGAIIGVGLACSMS--------------KAHFWETNGGANVVNNQVGAHQALGGE-----ILCTWLLVTVVLCATNPGLQK-AYVHQAVL-----------------LPWVIGMTVMLCHFTLVPVDGCSINPARSFGSAIITNTWKDHWVFWLGPLIGATIATLLFEAILRPPEPAPKLEAE 269          
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: A0A835Z3D0_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3D0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 7.800e-31
Identity = 74/207 (35.75%), Postives = 97/207 (46.86%), Query Frame = 1
Query:  487 GNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTL 1107
            GNLNPAVT ALV+GKR+S ++G+ YI++Q                                                              +CT LLC  VLVGLS +LW LM   K                +   LP  VG  V ++H++M+PIDG SINPARS+GPA V G W + A FW GPL+G   +++LWE V+RPPQ +
Sbjct:  123 GNLNPAVTAALVMGKRISLVRGLCYIVSQ-------------------------------------------------------------IICTALLCTTVLVGLSNELWELMPKAK----------------VHLLLPMAVGSAVAVAHLIMVPIDGTSINPARSFGPAAVAGQWSSHACFWVGPLLGALVSVILWEAVLRPPQAM 252          
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: I0ZAA7_COCSC (Plasma membrane intrinsic protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0ZAA7_COCSC)

HSP 1 Score: 120 bits (300), Expect = 2.130e-27
Identity = 75/226 (33.19%), Postives = 109/226 (48.23%), Query Frame = 1
Query:  487 GNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPS-FG-EFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVE 1158
            G++NPAVTF + + +++S L+ VLY++AQC GA  G    R                 + G+    GG N +S G       FGE + +G E + TM L   V      +  T                      +    PF +GM VF+ H+V IP+DGCSINPARS+G A V+G+WD   +FW GPL G   A  ++EL+ R      KA +    F+++  V+
Sbjct:  102 GHINPAVTFGMFVARKISVLRAVLYMVAQCLGACTGAGLVR--------------AIDDDGWRAAGGGANALSPG-------FGEAAGWGLETILTMALVFTVFAATDSERAT------------------DTAHLPVLAPFAIGMVVFLCHLVAIPLDGCSINPARSFGAAAVSGSWDNQWVFWVGPLSGAVLAAAIYELIFRTKAH--KAVAHPSEFDVERGVK 286          
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: A0A6H5JZJ3_9PHAE (Aqp protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ3_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.910e-27
Identity = 75/223 (33.63%), Postives = 106/223 (47.53%), Query Frame = 1
Query:  490 NLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVE 1158
            +LNPAV+ +L++GKR+S  +  LY++AQ  G  +G   A +                    +   GG N I+ GV+  + F  E      LCT LL + V     G+L      T                     LP V+GM V I+H+V+IPIDGCSINPARS+  A++   WD   +FW GPL+GG      WE ++RP QT+     D+H   +    E
Sbjct:  337 HLNPAVSMSLLVGKRISIERFGLYVVAQMAGGVIGASMANSFP------------------STTGGGFNAIADGVSAIEAFGAE-----VLCTFLLVVTVFTACDGELGRKNAHTGPL------------------LPLVIGMAVLIAHLVLIPIDGCSINPARSFATAVINNKWDDHWVFWVGPLLGGVLGTATWEAILRPDQTV----DDEHEVFLDMKKE 514          
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: A0A6H5KIW5_9PHAE (Aqp protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIW5_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.190e-26
Identity = 70/218 (32.11%), Postives = 102/218 (46.79%), Query Frame = 1
Query:  490 NLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNI 1143
            +LNPAV+  L++GKR+S  + +LY+IAQ  GAT G   A                      +   GG N ++  V+    F  E      LCT LL + V     G+L      T                     LP V+GM V ++H+V+IPIDG SINPARS+  A+    W    +FW GPL+GG  A + WE ++RP Q + + ++     ++
Sbjct:  102 HLNPAVSIGLLVGKRISVERFLLYVIAQMAGATAGAGIASTY------------------LSTTRGGFNALADNVSATDAFGAE-----VLCTFLLVVTVFAACDGELGRKTAHTGPL------------------LPLVIGMAVLLAHLVLIPIDGASINPARSFATAVTNNEWGDHWVFWVGPLLGGVLATVTWEAILRPDQVVEQEKNVPQAISV 278          
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: A0A8J9WPI2_9CHLO (Aquaporin PIP2-5 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WPI2_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 7.480e-26
Identity = 73/225 (32.44%), Postives = 102/225 (45.33%), Query Frame = 1
Query:  487 GNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFG-EFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVE 1158
            G++NPAVTF +++ +++S  + VLYI+AQC GA  G    +                   G+    GG N +S GV +A        +G E + TM L   V      +                         +    PF +GM VF+ H+V IP+DGCSINPARS+G A V G WD   +FW GPL G   A   +EL  R      KA +    F+I+  V+
Sbjct:  101 GHINPAVTFGMLVARKISVSRAVLYIVAQCLGACTGAGLVK--------------AIDTHGWRAAGGGTNALSAGVNNAA------GWGLETILTMALVFTVFAATDAE------------------RASDTAHLPVLAPFAIGMVVFLCHLVAIPLDGCSINPARSFGAAAVAGKWDDQWVFWVGPLCGAVMAATAYELFFRTKPN--KAVAHPSDFDIEGGVK 285          
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: A0A1X2I9S4_9FUNG (Aquaporin-like protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I9S4_9FUNG)

HSP 1 Score: 110 bits (276), Expect = 6.200e-24
Identity = 73/201 (36.32%), Postives = 99/201 (49.25%), Query Frame = 1
Query:  487 GNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSG----GVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLW 1077
            G LNPAV  +L+L ++++ L+G+   I +  GA LG  FA                      N V+     GVN++  G   AQ FF E      L T +LC+ +L  +  D     Y   +C                   PFVVG+T+F+ H+V  PIDG S+NPARS+GPA+VTG W    IFWFGPLIG   A L++
Sbjct:   89 GALNPAVLLSLMLCRKVNWLRGLFMFIGELVGAILGAYFA----------------------NFVTANELQGVNLLKPGFNYAQGFFAE-----LLLTCVLCVVILFVIVED----QYSAPSCN------------------PFVVGITLFMIHLVGTPIDGTSVNPARSFGPAIVTGKWANHWIFWFGPLIGAFFAFLIY 240          
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Match: A0A835Z1R5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R5_9STRA)

HSP 1 Score: 1068 bits (2763), Expect = 0.000e+0
Identity = 983/983 (100.00%), Postives = 983/983 (100.00%), Query Frame = 1
Query:    1 MEVAAQVSSPMQGEGGLAGGASAAEVASTAPAAAXAVNKTTPKAIASGRPSSASKATVKTTPGSTPVKKXXXXXXXXXXXXXXXXXXXXXXAVRTVSATRTRAAXXXXXXXXXXXXXXXXXXXXXXXXPRTPAARAAVTPKSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEXXXAKRLTLAERQAKXXXXXXXXXXXXXXXXXXXXXXXXXPDTPSAGRLSVGSTVSTKTXXXXXXXXXXXXXXXXXXXSAQPGATAPAGPKMVRTNSFNRLHEEAQLRAERQRQRREAAEAQDTPTFTPEISSHAKRSRSLSVSSTCSAFERLHGERTELEARRQAAAAQRNQEVMQQCTFAPTIGPNFVAGVGMPAQPRGRSSNRASLGGESADGTGDAAAAAAAAGPMHTRMAVFLQQRQARLDKLRADVAAQQGKDLTFSPKLNRPKTAKTSPPKDASAPTEGGQEDRGVDSSVPGPAKEAESGKQNAAAAPVAKLKAAAGGKQSPRGDGAAAKISAGSHAKSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVFERLLADASEHAARLRREQEAGEARALAECTFAPAIPSSRKSSVSARRSSGASAGSTGGAGVFDRLAAAAGPSHREPAAAPVSAAEVLARHVKVGGGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAADAAAAVAAFEXXXXXXXXXXXXXXXXXXXXXHGKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAQQHGAADADEPAAAAAPGLEALLDLDGNDDADAADAGPVFDVAEMLTKDSAATVSEVTTDAAAAVANGGAAVAWDLDAAGAREGASAAAVSESVESLLHADGGSDAHGRSSAQKDKKYDGGGNAAACGTILDTHIAWEEEMRDQIHQAGVL 2949
            MEVAAQVSSPMQGEGGLAGGASAAEVASTAPAAAXAVNKTTPKAIASGRPSSASKATVKTTPGSTPVKKXXXXXXXXXXXXXXXXXXXXXXAVRTVSATRTRAAXXXXXXXXXXXXXXXXXXXXXXXXPRTPAARAAVTPKSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEXXXAKRLTLAERQAKXXXXXXXXXXXXXXXXXXXXXXXXXPDTPSAGRLSVGSTVSTKTXXXXXXXXXXXXXXXXXXXSAQPGATAPAGPKMVRTNSFNRLHEEAQLRAERQRQRREAAEAQDTPTFTPEISSHAKRSRSLSVSSTCSAFERLHGERTELEARRQAAAAQRNQEVMQQCTFAPTIGPNFVAGVGMPAQPRGRSSNRASLGGESADGTGDAAAAAAAAGPMHTRMAVFLQQRQARLDKLRADVAAQQGKDLTFSPKLNRPKTAKTSPPKDASAPTEGGQEDRGVDSSVPGPAKEAESGKQNAAAAPVAKLKAAAGGKQSPRGDGAAAKISAGSHAKSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVFERLLADASEHAARLRREQEAGEARALAECTFAPAIPSSRKSSVSARRSSGASAGSTGGAGVFDRLAAAAGPSHREPAAAPVSAAEVLARHVKVGGGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAADAAAAVAAFEXXXXXXXXXXXXXXXXXXXXXHGKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAQQHGAADADEPAAAAAPGLEALLDLDGNDDADAADAGPVFDVAEMLTKDSAATVSEVTTDAAAAVANGGAAVAWDLDAAGAREGASAAAVSESVESLLHADGGSDAHGRSSAQKDKKYDGGGNAAACGTILDTHIAWEEEMRDQIHQAGVL
Sbjct:    1 MEVAAQVSSPMQGEGGLAGGASAAEVASTAPAAAXAVNKTTPKAIASGRPSSASKATVKTTPGSTPVKKXXXXXXXXXXXXXXXXXXXXXXAVRTVSATRTRAAXXXXXXXXXXXXXXXXXXXXXXXXPRTPAARAAVTPKSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEXXXAKRLTLAERQAKXXXXXXXXXXXXXXXXXXXXXXXXXPDTPSAGRLSVGSTVSTKTXXXXXXXXXXXXXXXXXXXSAQPGATAPAGPKMVRTNSFNRLHEEAQLRAERQRQRREAAEAQDTPTFTPEISSHAKRSRSLSVSSTCSAFERLHGERTELEARRQAAAAQRNQEVMQQCTFAPTIGPNFVAGVGMPAQPRGRSSNRASLGGESADGTGDAAAAAAAAGPMHTRMAVFLQQRQARLDKLRADVAAQQGKDLTFSPKLNRPKTAKTSPPKDASAPTEGGQEDRGVDSSVPGPAKEAESGKQNAAAAPVAKLKAAAGGKQSPRGDGAAAKISAGSHAKSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVFERLLADASEHAARLRREQEAGEARALAECTFAPAIPSSRKSSVSARRSSGASAGSTGGAGVFDRLAAAAGPSHREPAAAPVSAAEVLARHVKVGGGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAADAAAAVAAFEXXXXXXXXXXXXXXXXXXXXXHGKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAQQHGAADADEPAAAAAPGLEALLDLDGNDDADAADAGPVFDVAEMLTKDSAATVSEVTTDAAAAVANGGAAVAWDLDAAGAREGASAAAVSESVESLLHADGGSDAHGRSSAQKDKKYDGGGNAAACGTILDTHIAWEEEMRDQIHQAGVL 983          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5C8_9STRA2.830e-199100.00Aquaporin-like protein n=1 Tax=Tribonema minus Tax... [more]
A0A836CE69_9STRA7.430e-5737.57Transmembrane channel protein n=1 Tax=Tribonema mi... [more]
A0A835Z4I3_9STRA3.530e-4733.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YY46_9STRA1.050e-3137.26Aquaporin n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A835Z3D0_9STRA7.800e-3135.75Aquaporin-like protein n=1 Tax=Tribonema minus Tax... [more]
I0ZAA7_COCSC2.130e-2733.19Plasma membrane intrinsic protein n=1 Tax=Coccomyx... [more]
A0A6H5JZJ3_9PHAE2.910e-2733.63Aqp protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5KIW5_9PHAE5.190e-2632.11Aqp protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A8J9WPI2_9CHLO7.480e-2632.44Aquaporin PIP2-5 n=1 Tax=Coccomyxa sp. Obi TaxID=2... [more]
A0A1X2I9S4_9FUNG6.200e-2436.32Aquaporin-like protein n=1 Tax=Absidia repens TaxI... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|348766 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z1R5_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:79690..86570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348766|estExt_Genemark1.C_Ctg_310014
KEGG TC1.A.8,1.A.8.11
BRITEko00000,ko02000
KEGG koko:K09872
GOsGO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005215,GO:0005372,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005886,GO:0005887,GO:0005911,GO:0006810,GO:0006811,GO:0006833,GO:0006855,GO:0006950,GO:0007275,GO:0008150,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009888,GO:0009987,GO:0010015,GO:0010033,GO:0010035,GO:0010053,GO:0010054,GO:0015250,GO:0015267,GO:0015318,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0019899,GO:0021700,GO:0022607,GO:0022622,GO:0022803,GO:0022838,GO:0022857,GO:0030054,GO:0030154,GO:0031224,GO:0031225,GO:0031226,GO:0031625,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0034220,GO:0040007,GO:0042044,GO:0042221,GO:0042493,GO:0042891,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044389,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046658,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051181,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051290,GO:0051291,GO:0051704,GO:0051707,GO:0055044,GO:0055085,GO:0060560,GO:0065003,GO:0071695,GO:0071840,GO:0071944,GO:0080147,GO:0080170,GO:0090558,GO:0090627,GO:0097159,GO:0097305,GO:0099402,GO:1901363,GO:1901700,GO:1905392
Preferred namePIP2
DescriptionBelongs to the MIP aquaporin (TC 1.A.8) family
COG categoryG
Max annot lvl33090|Viridiplantae
EggNOG OGsCOG0580@1|root,KOG0223@2759|Eukaryota,37I73@33090|Viridiplantae
Evalue3.49e-28
Seed ortholog248742.XP_005652120.1
Hectar predicted targeting categorysignal anchor
TranscriptId349088
TrackFilteredModels1
ProteinId348766
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348766gene_7357Tribonema minus UTEX_B_3156 geneContig_31 79690..86570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348766Trimin1|348766|estExt_Genemark1.C_Ctg_310014Tribonema minus UTEX_B_3156 polypeptideContig_31 79690..86570 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7357_14exon_7357_14Tribonema minus UTEX_B_3156 exonContig_31 79690..79904 -
exon_7357_13exon_7357_13Tribonema minus UTEX_B_3156 exonContig_31 80924..80993 -
exon_7357_12exon_7357_12Tribonema minus UTEX_B_3156 exonContig_31 81763..81810 -
exon_7357_11exon_7357_11Tribonema minus UTEX_B_3156 exonContig_31 81862..81942 -
exon_7357_10exon_7357_10Tribonema minus UTEX_B_3156 exonContig_31 82440..82454 -
exon_7357_9exon_7357_9Tribonema minus UTEX_B_3156 exonContig_31 82623..82751 -
exon_7357_8exon_7357_8Tribonema minus UTEX_B_3156 exonContig_31 82843..82881 -
exon_7357_7exon_7357_7Tribonema minus UTEX_B_3156 exonContig_31 84328..84418 -
exon_7357_6exon_7357_6Tribonema minus UTEX_B_3156 exonContig_31 85340..85405 -
exon_7357_5exon_7357_5Tribonema minus UTEX_B_3156 exonContig_31 85523..85602 -
exon_7357_4exon_7357_4Tribonema minus UTEX_B_3156 exonContig_31 85710..85766 -
exon_7357_3exon_7357_3Tribonema minus UTEX_B_3156 exonContig_31 85881..86054 -
exon_7357_2exon_7357_2Tribonema minus UTEX_B_3156 exonContig_31 86310..86371 -
exon_7357_1exon_7357_1Tribonema minus UTEX_B_3156 exonContig_31 86528..86570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7357CDS_7357Tribonema minus UTEX_B_3156 CDSContig_31 86528..86570 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7357 ID=mRNA_7357|Name=jgi.p|Trimin1|348766|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1170bp|location=Sequence derived from alignment at Contig_31:79690..86570- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTGCCTTGGCCGTGCAGCAAGTTGGCGCGGCGCTACGCACTTGA
ATTAGCGCTGTGGCGCGGCATCGCGACGGAGGCCATCGGCATGACGTTCT
TCCTTCAAATCGACGCGGCGCTGTGGCGCGGCGTCGCGACGGAGGCCATC
GGCATGACGTTCTTCCTCTTCCTGACCATCACGCTCATCGCGTACAACGC
GACGCGCCTCGCTAACGGCTACGACCAGGGCGGCATCAAGGAGCTCACCA
TCGCCTTCGTCTTTGGCTTCTCCATCTTTGGCGGCATCAAGGAGCTCACC
ATTGCCTGTGTCTTTGGCTTCTCCATCTTTGTGCTGGGCGGCATCAAGGA
GCTCACCATTGCCTGTGTCTTTGGCTTCTCCATCTCCGTGCTGGTGTACA
TCACGTCGGGCATCAGCAGCATCAAGGAGCGCATGATCGCCGTTGTCTTT
GGCTTCTCCATCTTTGTGCTCGTATACATCACCGGCGGCAACCTCAACCC
CGCGGTCACCTTCGCGCTCGTCCTCGGCAAGCGCATGTCCGCGCTGCAGG
GCGTGCTCTACATCATCGCTCAGTGCTTCGGCGCGACCCTGGGAACGCTC
TTCGCGCGGAACTGCTTCGGCGCGACCCTGGGAACGATCTTTGCGCGGAA
CGTCGCCGGCGAGAGCGGCTTCAACCTGGTCAGCGGCGGCGTCAACATCA
TCTCCACGGGCGTGACGGACGCGCAGACGTTCTTTGGCGAGCCGTCCTTC
GGCGAGTTCCTGTGCACCATGCTGCTGTGCCTTGCGGTGCTGGTGGGCCT
CAGCGGCGACCTGTGGACGCTCATGTACCCCACCAAGGCTTGCTGTGGCC
TCAGCGACCTGTGGACGCTCATGTACCCCACCAAGATGGACTTCAACTTG
CCGTTTGTCGTTGGAATGACGGTTTTCATCAGCCACATCGTCATGATTCC
CATAGACGGCTGCAGCATCAACCCCGCGCGCTCCTGGGGACCGGCGCTCG
TCACCGGCAACTGGGACACCATGGCCATCTTCTGGTTCGGGCCGCTGATT
GGCGGCGCTGGCGCGATACTCCTGTGGGAGCTGGTCATGCGCCCGCCGCA
GACGCTGCCCAAGGCGGAGTCCGACAAGCACCGCTTCAACATCAAGGCGC
TCGTGGAGCCGCGCTTCTGA
back to top

protein sequence of jgi.p|Trimin1|348766

>Trimin1|348766|estExt_Genemark1.C_Ctg_310014 ID=Trimin1|348766|estExt_Genemark1.C_Ctg_310014|Name=jgi.p|Trimin1|348766|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=390bp
MNVPWPCSKLARRYALELALWRGIATEAIGMTFFLQIDAALWRGVATEAI
GMTFFLFLTITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFGGIKELT
IACVFGFSIFVLGGIKELTIACVFGFSISVLVYITSGISSIKERMIAVVF
GFSIFVLVYITGGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTL
FARNCFGATLGTIFARNVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSF
GEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSDLWTLMYPTKMDFNL
PFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLI
GGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVEPRF*
back to top

mRNA from alignment at Contig_31:79690..86570-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7357 ID=mRNA_7357|Name=jgi.p|Trimin1|348766|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6881bp|location=Sequence derived from alignment at Contig_31:79690..86570- (Tribonema minus UTEX_B_3156 )
ATGAATGTGCCTTGGCCGTGCAGCAAGTTGGCGCGGCGCTACGGTCCGGC ATCTCAGCCTGGCCATCGGCATGACATTATTCCTGTTTCTGACCATCACG CTCATTGGGCTCCTGGTTTCTGGCTCCGTTTCATGCCAGCGTTGATGATA ACGTCAACACTTTGTCTAACGCGGTCATTAATCCATGCCGCTCCCGCAGC ACTTGAATTAGCGCTGTGGCGCGGCATCGCGACGGAGGCCATCGGCATGA CGTTCTTCCTTGTTCTGACCATAACGCACATGACAAGCCTATTTTTGTGC CACATTTGCCGACAATCTCGACAATAGTCACACACAGTCAACCATCAATG TTGTCCCTGCAGCAAATTGACGCGGCGCTGTGGCATGGCGTCGCGACGGA GGCCATCGGCTTGACATTCTTCCACTTCCTGACCATCTTCTGGCTCTTTT TTGGCCAATTTTGGCTGATATCTTGACAGTCGCTCACATGGTCCACCACC TGCGCTGCCCCCGCAGCAAATCGACGCGGCGCTGTGGCGCGGCGTCGCGA CGGAGGCCATCGGCATGACGTTCTTCCTCTTCCTGACCATCACGCTCATC GCGTACAACGCGACGCGCCTCGCTAACGGCTACGACCAGGGCGGCATCAA GGAGCTCACCATCGCCTTCGTCTTTGGCTTCTCCATCTTTGTTCTTGTGT ACATCACGTCAGGCATCAGGTATGCGTTACATTCGGCTGTCGCCTAGACT ACATACTTGAAGTACTTCAAAGTAGTACTGGTATGTAGGTTTGATTACGA CCAGGGCGGCATCAAGGAGCTCACCATTGCCTGTGTCTTTGGCTTCTCCA TCTTTGTGCTGGTGTATATCACGTCGGGCATCAGGTGCGCGCGTTACATT GTTGTCCCTAGACTACATACTTGAAGTACTTCAAAGTAGTACTGGTATGT AGGTTTGATTACGACCAGGGCGGCATCAAGGAGCTCACCATTGCCTGTGT CTTTGGCTTCTCCATCTCCGTGCTGGTGTACATCACGTCGGGCATCAGGT GCGCGTTACAGTCGGTTGTCTTCTAGACGACATACCCGAAGTACTTCAAA AGCAGTATCGTCAACTGGCCAAAGCATGGTGCTGTCACAATATGTATGTG TGACTACGACCAGAGCAGCATCAAGGAGCGCATGATCGCCGTTGTCTTTG GCTTCTCCATCTTTGTGCTCGTATACATCACGTCGGGCATCAGGCGCGCG TCACACTCGGCTGTCTCCTGGACCACATACTTCACAAAGTAGTCATGTTG TCATAGCATGTACGTATGACTACAACCAGGGTGGCATCGAGGGCTCACGA CAGACACTAGCGTCACTGCCATGTACTCGTGCAGCTTGCATCACAGACCG TGGCCCCCGCTGGACCCCTCCCCCCCCGCCCCACCCCCCCCCCGGTGCAC TGCTCGGGTACCTCTGCGCCGAGCATTGCCTCTCCTCAATGCCTGCGCGG CGTGTGCATGTGTTCATAAGCACATTAAGTTCGCTGCCCACCCGCGAGCA GTGCGCACAGATGAAGCAGGAGCTTCGTGCTCTGAGGTTTTCACGAGGGG CGGATGCTCTAAACCATACCGCTGCATGCCGCGCATTGGCTCCCCTTGCA CATTGCGCGCGCGCGCCTCCGCAGCGGTCACTCCCTCTTGCTACACTGTA CGCGCTCGCCGTAGGATTAGGGTTAGGGTTAGGGTTAGAGTGAAAGTTAG GAACAGGATTAGCGGCTCTCCGCAGTGCGCTCAAACCCTGCGGTGAAACC TTCAGCGATGCTGGCGTGCGAGCACAAGTCCATGCCAAGCGCGCTTTATA TATCAGCAGTACCCGCTGCTGGATTCCGCACGAGACGCCACATGGGAAAC GCGCAACTGCTCGCGCCTGTCTGTCCCATCTTTAAAGTTGAAGGTCATGC CCTTGTCTGTGCCGAGCGCTGCACAGCGGCGGCAACCCTTAACCCCACGC GTCATATATATCTAATTATATTAGTATTACCCGCTGCTGGGAGGCTGCAC ATATGAAACGCGCCGCCGCTCACCCCTGTCCATCCCAACATCACACCTGA AGTGTATGTTCACACTTGAAGTATGTGTCTTCGTGTGCTGAGCGCTGCGC AGCGGCGGCAACCTCAACCCCGCGGTCACCTTCGCGCTCGTCCTCGGCAA GCGCATGTCCGCGCTGCAGGGCGTGCTCTACATCATCGCTCAGGTGAGAG AGAACAGCGGCGGCGCGCGCGCTCTTGCACGGGTCCACTCGGCAGTGCAC ATTGCAGGTCATGTAGGCTGGTGCATGCGTAGGATGTGAACCCTGAGAAC ACAAACGGGGCACGTGGCCTCTTCTGAGCCTTCACGAGTACAAGTCCGTG AATTGCACATGTACTGCAACTGAGATTGCAAGCGTAAGGTATGCCTGGAT GGCACACTTGCGGGAGAATGAGCGTCTAGTTTGGGACTGTGCGCTGCAGC ACTGTGCTTATGGGAGGCGGCGTTTCGTGTTCTTCCGCGAAGGGCTTCAG TGAACTGACCGGACGAACCCCTACCCAGGGGGCTTTAACTGCAGATTCGC CTCCAACTTTACTGTTCTGGAGGCTGAGATGCGGTGCCGGGGGCAGCGCT CAGTTGTCGCAGTTCATGCGCATTACACACACAGTACATGTACAGTGCGA TCGCAGTACGCAAGCGGTTCACGCCCGTTAGAGTGCGTTTGCGAGGGGGG AGCTGGCGACTTGTGCCCACAGCAGTGCTCCGCAGCAGCGCTCCAAGCAG TGCTCACTTGAAGGGTGAGCGTTAGGGTTAGGGTTAGAGTTAAGCGCCCG GTTGCAGTGCTCGGGCCAGCTCAAAGGTAGAGTCCGGCCTATGGTCAGGT CAGGGTGGAGTTTAGGTTAAGGATTACGGGGGTAGCGTCCAACAATGCGC GAGGTGCAGGACAGCCGCTGCAGGGGCATCTCCTTCCCACGCCACTACGT GCCCCCCGATGTGCAATTGCTCGCAGACAGGGTTAGGGTTAGGGTTAGGG TTAGGGTTAGGGTTAGGGTTATTGACGGCTGGTCGTCGAAGTCGAGCACC AATCCCCTGTGCGGCAGCAGCAGCAGCGTTGGTAACTGCCAACGCAGAGG GCAGCTCAGGTGGCGGGCATCTCTAGGGTTAGGGTCAGGGTTGGGGCCTG GAACGACTTGTGCTCGTGGACCTTTGCCAGCCAGCCTTACGGCAACCTAC CTAGTGCTTTATTATGTCCAGGTACGTCAAAGTATACACATGGCTCCCTG ATCATTCATCTCAATAGCATGCACTGCAACCCTTCCTCTACGCTGTAGAG CTCCAGAACGATGCTTCACACGGTCTTTGCCAGAAGCGCCGCCTGTTGAG TACCTCCAACTTCAATTGCATCGCTGCATCCGGAAGCAGCGCGACAAATG CATGCCCCGAAATTGCCGCTGTGCCACCACTTTCATATTTTCGAAACCGA GTTGACGCAACGTCCACGCGCGCCGTCCACCTGGAAGTACCCCAAAACTT CAAGTGCATCGCTGCATCCAGAAGCAGCAGCGACCAACGTAAGCCTGAAG TCACCGCTGTGCCATCACTTTCGTAGCTGCAAAACCAAGTTGAGGCAACA CCCAAGCACACGTGCCGTCACGCCCCCCCCGCGCTGCAGTGCTTCGGCGC GACCCTGGGAACGCTCTTCGCGCGGAACGTCGCCGGCGACGCGGCTTCAA CTTCAAAGTCAAGTTGAAGTAACACCGCCATGCGCTTGCCGTCACCCCCC CCCCCCCGCGTCGCCGCAGTGCTTCGGCGCGACCCTGGGAACGATCTTTG CGCGGAACGTCGCCGGCGAGAGCGGCTTCAACCTGGTCAGCGGCGGCGTC AACATCATCTCCACGGGCGTGACGGACGCGCAGACGTTCTTTGGCGAGGT GAGCGCTGCCACTTCAACATTGAAGTATGCGTGAGACGTGACGGACGCGC AGACGTTCTGTGGCGAGGTGAGCACTGACGCAGATGGCTGAGCACTGCCA CTTCAACATTGAGGTTTGTGTAAAACGTGACCGCAGCAGTTTGTGTAAAA CGTGACGCACGCGCAGCCGTCCTTCGGCGAGGTGAGCGCTGCCGCTGCGC ATGGGCTAAGCACTGCCACTTCAACATTGTGACGTCTGCACTAAACATGA CGCGAGTGCAGACCTTCTTTGGTGAGGTGACGAGGCGGGTGCGGATGGGA CGGATGCTGAGCTCTGCCACTTCAAGATTGAAGTCTGTGCATGAAACGTG ATGCGCCGCCCCGAGCGCCTGGCGCTCTCCCCAGTGACAGAAGTCGCGCG CCGCTGTGTTGAGGTTTGTGCAATTGCGGTGACGATCCGCGCTGCTGCCC GTGGACCGCGAGCGATGATGCTCATTTTGCCGGGTGTGAGCCATTCAGGG AGGTGAGCGGCGAGCACGGGAACTGTTGCCTGCCCCCTCGCTTACCTCAT TGCTGGTTCCTGGCTCTTGGCTTTCTTCCTGCCCCTCGCTCGCTGGCTCC TGGCCTCTGTACGCCTAAACTGCCGATAACTTCAACACCCCATTTGCCCC CCCCCCCCCGCGCGCTGCCGCCGTGCAGTTCCTGTGCACCATGCTGCTGT GCCTTGCGGTGCTGGTGGGCCTCAGCGGCGACCTGTGGACGCTCATGTAC CCCACCAAGGTGAGCGTCACTTCATGTTGTGTTTTTGCACTTCAACTTGA ACTTGCTCAGGCTTGCTGTGGCCTCAGCGACCTGTGGACGCTCATGTACC CCACCAAGGTGAGCGTCACTTCAAGTGGTGACACTGGTGCGTGTACTTCA ACTTGCTCTTGCTCTGCCTGTGTTCTTGGCCTCAGCGGCGCCCTGCCAGT GTGCGGATGACTCATGCGCCGCGCTAGCTGAGATGAGCGTCACTTCAAGT GATGACGCCGCGCGCGTACTTCAAATTTGCTGTTGAGGACTGTCGTCAGT CTTGTACGAGCGGGCCACCGCAACGTGCCATTCGATTCGAAACTCCGGTA GTACATGGTCTGCATGTTCCGCGTGCAGAGGCCCTGTCACTTGTGGTCTC CAATATGTCTCGTCTCTGGACATGTGGCTGGTCGTACGCTACTTGGTGGT CGATTTCGACAGCGTGCTGGCTGTACAGCTCCATGTTCAAGAGCTCCGCG GTGTCGATGACTTGAACGGCGGGTACGGCACGCAGTTGTGTCGCCCTGCG ATCGCGCCCATAAAGCTCTTCAGCACCAACATCAACTTTGCTGCAAGGTG CTCCAGCCATGAGCTCTGCGATATTGACGATTCACGCTGCCGGCACGGCA CGGGCACGTGTCGCCCCGCGATCGCGCCTGTGAGCCTCTTCAGCACCAGT ATAAACTCCTGCGGCTGACACGCAAGCAGTGACCATCGTGCGGAAGCACG CCAAACAGCGAACAGCTGCAGCATCGCTAGGACATCTGTTCCGTCCCTAC ATGCCCACATACCTGTACATACCCCCTACACACACCCTCTTGCCCTCTCC CCCGCCCCGTGTCTCGCCGCGCGTCAGATGGACTTCAACTTGCCGTTTGT CGTTGGAATGACGGTTTTCATCAGCCACATCGTCATGATTCCCATAGGTG CGTGCGACGTTGCTGCGCGGTGTGCGGCAGTGTTCGGTTCGGATTGTCTG ACCAGATGGCGTGCGCATACCCACTGGTACAGTTGGAAGCGCCCCGGTTT TGACAGTGGCGTGTACGCAACGCAGGATCATTGCGTGACTCTGTCCTATC ACTTCATGTTTCGTGCCCTTCGAACTGCGTTGACTACATCGATTTGAATG TATGATTGTGTGCACACATGGGCAACAAAAAGTTGGCCTCAGATCAAAAC GCTGAATGCAGCAAAACTAGCAACGAAATCCGGGAAAACATACCAACTAC CGTACATCAATCATGAGGCCCATGGGGCACACGGTGTGTGTGTGTATGGC ATGCCCTCTCTGCAAAAAGGACAGAAGGGTGGGTGCCCTATGGCTGAGCT AGATAACATACCAACGACTGACAGCTGTCTGCTACTCTCATTTGCATTCA AAAATCGTCTGATTTGCGACAACCTCCTGAGCCCGATACATTTTTCTTCA TCAGCAACAAAATAGGACGTACAGGATGACTTGAACCCTCCTGTGGGTAT GCACACACAGTGACTCGTTCAACCACTCTCATAACAGTTCGCCGACTGAC TTGCACAATGTTCTCGCTGCTCAAGCACTTGACAATGACTCGCTCAATGA ATCATCACAAAACGACTCGACCAATGACTCGCACAACGTCTCGCGTGATG ACGCACGCACTCTCTTGCAGTGACTCGCTCAATGACTCACACTATGACTC ACCCAACGACTCGCACAACGCCTCACACGCCGACGCGCGCAGACGGCTGC AGCATCAACCCCGCGCGCTCCTGGGGACCGGCCCTTGTCACCGGCTACTG ACTTGCACAGTAAATCGCTCAATGAGGCACACAACAACTCACTGAGTGAC TTGCACAACTTTCTTGCTTGATGACTTACGCACTTGCACGATGACTCGCT TAATGAATCATCACACAATGACTCACACAATGACTCACACAATGACTCGT GCAATGTCTTGCGCAGACGGCTGCAGCATCAACCCCGCGCGCTCCTGGGG ACCGGCGCTCGTCACCGGCAACTGGGACACCATGGCCATCTTCTGGTTCG GGCCGCTGATTGGCGGCGCTGGCGCGATACTCCTGTGGGAGCTGGTCATG CGCCCGCCGCAGACGCTGCCCAAGGCGGAGTCCGACAAGCACCGCTTCAA CATCAAGGCGCTCGTGGAGCCGCGCTTCTGA
back to top

Coding sequence (CDS) from alignment at Contig_31:79690..86570-

>mRNA_7357 ID=mRNA_7357|Name=jgi.p|Trimin1|348766|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1170bp|location=Sequence derived from alignment at Contig_31:79690..86570- (Tribonema minus UTEX_B_3156 )
ATGAATGTGCCTTGGCCGTGCAGCAAGTTGGCGCGGCGCTACGCACTTGA
ATTAGCGCTGTGGCGCGGCATCGCGACGGAGGCCATCGGCATGACGTTCT
TCCTTCAAATCGACGCGGCGCTGTGGCGCGGCGTCGCGACGGAGGCCATC
GGCATGACGTTCTTCCTCTTCCTGACCATCACGCTCATCGCGTACAACGC
GACGCGCCTCGCTAACGGCTACGACCAGGGCGGCATCAAGGAGCTCACCA
TCGCCTTCGTCTTTGGCTTCTCCATCTTTGGCGGCATCAAGGAGCTCACC
ATTGCCTGTGTCTTTGGCTTCTCCATCTTTGTGCTGGGCGGCATCAAGGA
GCTCACCATTGCCTGTGTCTTTGGCTTCTCCATCTCCGTGCTGGTGTACA
TCACGTCGGGCATCAGCAGCATCAAGGAGCGCATGATCGCCGTTGTCTTT
GGCTTCTCCATCTTTGTGCTCGTATACATCACCGGCGGCAACCTCAACCC
CGCGGTCACCTTCGCGCTCGTCCTCGGCAAGCGCATGTCCGCGCTGCAGG
GCGTGCTCTACATCATCGCTCAGTGCTTCGGCGCGACCCTGGGAACGCTC
TTCGCGCGGAACTGCTTCGGCGCGACCCTGGGAACGATCTTTGCGCGGAA
CGTCGCCGGCGAGAGCGGCTTCAACCTGGTCAGCGGCGGCGTCAACATCA
TCTCCACGGGCGTGACGGACGCGCAGACGTTCTTTGGCGAGCCGTCCTTC
GGCGAGTTCCTGTGCACCATGCTGCTGTGCCTTGCGGTGCTGGTGGGCCT
CAGCGGCGACCTGTGGACGCTCATGTACCCCACCAAGGCTTGCTGTGGCC
TCAGCGACCTGTGGACGCTCATGTACCCCACCAAGATGGACTTCAACTTG
CCGTTTGTCGTTGGAATGACGGTTTTCATCAGCCACATCGTCATGATTCC
CATAGACGGCTGCAGCATCAACCCCGCGCGCTCCTGGGGACCGGCGCTCG
TCACCGGCAACTGGGACACCATGGCCATCTTCTGGTTCGGGCCGCTGATT
GGCGGCGCTGGCGCGATACTCCTGTGGGAGCTGGTCATGCGCCCGCCGCA
GACGCTGCCCAAGGCGGAGTCCGACAAGCACCGCTTCAACATCAAGGCGC
TCGTGGAGCCGCGCTTCTGA
back to top