mRNA_7352 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348763
Unique Name	mRNA_7352
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348763 vs. uniprot
Match: A0A835YXI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXI0_9STRA)

HSP 1 Score: 994 bits (2571), Expect = 0.000e+0
Identity = 940/940 (100.00%), Postives = 940/940 (100.00%), Query Frame = 1

Query:    1 MPAAAEGSGDGASVADGAGLHAASSTNPYIMVVSKKLRALRKKGEKIRKTEEQAASGKQLHDEQVELIMTKELVERSVLEHSTILAMLEEVAKGEAAAAEAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEGEALPLMPAEVADATTNTAAVGTAAASVQTAPQQEPAAALSKPRGVSSAQQTVAVPDAAQXXXXXXXXXXADVTRKLLRLLHAWSWAGGAHALPVPVRLFCDVIFGRARPPPPEEADFEEIVHANTKHALRYVTQAQGEFGAGVTYVQLEAMVEELCTKFSPAPAAAAAXAXXXXQAQPAAARQPEQASKAXXXXXRAXQAKPSRPXXXXXXXXPVQSRAEQLRGGQEGXXXXXXXXXXXXXARVSDGPARASGEAAAQSAHRGGSEHRERERRKQGEVRVPAAAAPAQPQRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRQRVVQQLQEPXXXXXXXXXXXXXALPGAQRAQQXXXXXPSPVKQERLHQPSQVPSAAQAKSAARPQGGAAAANMNSGRRDADKGAHGTNGVSTSAKAPAPLAVPTLQDPPTAPGWADEPMDTWAAPAGDAPTQGRTATATMQAADTRRAPPGRGDRRDGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXGRMKRSGRGXXARKSKQQTSDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLPARQAPVAAPHATVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGATAAAPAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPAKAXXXPPADAAEQAKAAARNGSGXXXXXXXXXXXXXXXXXXXXGRGDGRHRKPGSGRNSRGTGGDAAAKDGHIARAEGGTPAGQALMAG 2820
            MPAAAEGSGDGASVADGAGLHAASSTNPYIMVVSKKLRALRKKGEKIRKTEEQAASGKQLHDEQVELIMTKELVERSVLEHSTILAMLEEVAKGEAAAAEAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEGEALPLMPAEVADATTNTAAVGTAAASVQTAPQQEPAAALSKPRGVSSAQQTVAVPDAAQXXXXXXXXXXADVTRKLLRLLHAWSWAGGAHALPVPVRLFCDVIFGRARPPPPEEADFEEIVHANTKHALRYVTQAQGEFGAGVTYVQLEAMVEELCTKFSPAPAAAAAXAXXXXQAQPAAARQPEQASKAXXXXXRAXQAKPSRPXXXXXXXXPVQSRAEQLRGGQEGXXXXXXXXXXXXXARVSDGPARASGEAAAQSAHRGGSEHRERERRKQGEVRVPAAAAPAQPQRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRQRVVQQLQEPXXXXXXXXXXXXXALPGAQRAQQXXXXXPSPVKQERLHQPSQVPSAAQAKSAARPQGGAAAANMNSGRRDADKGAHGTNGVSTSAKAPAPLAVPTLQDPPTAPGWADEPMDTWAAPAGDAPTQGRTATATMQAADTRRAPPGRGDRRDGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXGRMKRSGRGXXARKSKQQTSDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLPARQAPVAAPHATVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGATAAAPAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPAKAXXXPPADAAEQAKAAARNGSGXXXXXXXXXXXXXXXXXXXXGRGDGRHRKPGSGRNSRGTGGDAAAKDGHIARAEGGTPAGQALMAG
Sbjct:    1 MPAAAEGSGDGASVADGAGLHAASSTNPYIMVVSKKLRALRKKGEKIRKTEEQAASGKQLHDEQVELIMTKELVERSVLEHSTILAMLEEVAKGEAAAAEAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEGEALPLMPAEVADATTNTAAVGTAAASVQTAPQQEPAAALSKPRGVSSAQQTVAVPDAAQXXXXXXXXXXADVTRKLLRLLHAWSWAGGAHALPVPVRLFCDVIFGRARPPPPEEADFEEIVHANTKHALRYVTQAQGEFGAGVTYVQLEAMVEELCTKFSPAPAAAAAXAXXXXQAQPAAARQPEQASKAXXXXXRAXQAKPSRPXXXXXXXXPVQSRAEQLRGGQEGXXXXXXXXXXXXXARVSDGPARASGEAAAQSAHRGGSEHRERERRKQGEVRVPAAAAPAQPQRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRQRVVQQLQEPXXXXXXXXXXXXXALPGAQRAQQXXXXXPSPVKQERLHQPSQVPSAAQAKSAARPQGGAAAANMNSGRRDADKGAHGTNGVSTSAKAPAPLAVPTLQDPPTAPGWADEPMDTWAAPAGDAPTQGRTATATMQAADTRRAPPGRGDRRDGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXGRMKRSGRGXXARKSKQQTSDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLPARQAPVAAPHATVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGATAAAPAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPAKAXXXPPADAAEQAKAAARNGSGXXXXXXXXXXXXXXXXXXXXGRGDGRHRKPGSGRNSRGTGGDAAAKDGHIARAEGGTPAGQALMAG 940

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BLAST of jgi.p|Trimin1|348763 vs. uniprot
Match: D7G7T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T6_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.220e-14
Identity = 118/310 (38.06%), Postives = 159/310 (51.29%), Query Frame = 1

Query:   67 ASSTNPYIMVVSKKLRALRKKGEKIRKTEEQAASGKQLHDEQVELIMTKELVERSVLEHSTILAMLEEVAKGEAAAAEAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----PEG----EALPLMPAEVADAT----TNTAAVGTAAASVQTAPQQEPAAALSKPRGVSSA----------QQTVAVPDAAQXXXXXXXXXXADVTRKLLRLLHAWS-WAGGAHALPVPVRLFCDVIFGRARPPPPEEADFEEIVHANTKHALRYVTQAQG--EFGAGVTYVQLEAMVEELCTKFSPAPAAAA 918
            A+++NPY+  +SKK R L+KK EKI+KTE  +ASGK L++EQ++L+ TK L+E ++ EH  + A +E VAK       AEK       XXXXXXX       XXXXXXXXXXXX     PEG    +  P   AEVA AT     +T  + T  A VQT     P      PR VS A          ++  A  +A +          A    K+LRLLH  S +      LP  V  F  V+ G+  PP  +EADF++ +  + + A  Y+  + G  E   GV+Y  L+ MV  L ++    PAAAA
Sbjct:   90 ATTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEERETAEKAKLLLAPXXXXXXXTGLSIAAXXXXXXXXXXXXXPAPGPEGGGPQDQQPA--AEVAVATESVGVSTDLLATEEAEVQTDVSGPPPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGIAKGRKEAATGLSKVLRLLHVASRFEAKGERLPTAVDFFSKVLLGKTMPP--DEADFDDCLGQSVERASLYLDPSNGSKEVAPGVSYATLDDMVSTLRSQIIAGPAAAA 395

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BLAST of jgi.p|Trimin1|348763 vs. uniprot
Match: A0A6H5KV56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV56_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-12
Identity = 120/310 (38.71%), Postives = 161/310 (51.94%), Query Frame = 1

Query:   67 ASSTNPYIMVVSKKLRALRKKGEKIRKTEEQAASGKQLHDEQVELIMTKELVERSVLEHSTILAMLEEVAKG--EAAAAEAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEGEAL----PLMPAEVADATTNTAAVG-------TAAASVQTAPQQEPAAALSKPRGVSSA----------QQTVAVPDAAQXXXXXXXXXXADVTRKLLRLLHAWS-WAGGAHALPVPVRLFCDVIFGRARPPPPEEADFEEIVHANTKHALRYVTQAQG--EFGAGVTYVQLEAMVEELCTKFSPAPAAAA 918
            A+++NPY+  +SKK R L+KK EKI+KTE  +ASGK L++EQ++L+ TK L+E ++ EH  + A +E VAK   E  AAE  K     XXXXXXXXXX   XXXXXXXXXXXXXXX          P      A+    T +VG       T  A VQT  +  P      PR VS A          ++  A  +A +          A    K+LRLLHA S +      LP  V  F  V+ G+  PP  +EADF++ +  + + A  Y+  + G  E   GV+Y  L+ MV  L ++    PAA A
Sbjct:   45 ATTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEEREAAEKAKLLLAPXXXXXXXXXXGLSXXXXXXXXXXXXXXXXXXXXXXGGGPQDQQPAAEVAVETESVGVSTDPPATEEAEVQTDVKGPPPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGIVKGRKEAATGLSKVLRLLHAASRFEAKGQRLPTAVDFFSKVLLGKTVPP--DEADFDDCLAQSVERASLYLDPSNGSKEVAPGVSYATLDDMVSTLRSQIIAGPAATA 352

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348763 vs. uniprot

BLAST of jgi.p|Trimin1|348763 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YXI0_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7G7T6_ECTSI	1.220e-14	38.06	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KV56_9PHAE	1.110e-12	38.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_31	contig	Contig_31:36434..42376 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348763\|estExt_Genemark1.C_Ctg_310006
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2CXH2@1\|root,2RXF1@2759\|Eukaryota
Evalue	2e-15
Seed ortholog	2880.D7G7T6
Hectar predicted targeting category	other localisation
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-06_000350.1
TranscriptId	349085
Track	FilteredModels1
ProteinId	348763

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348763	gene_7352	Tribonema minus UTEX_B_3156	gene	Contig_31 36434..42376 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348763	Trimin1\|348763\|estExt_Genemark1.C_Ctg_310006	Tribonema minus UTEX_B_3156	polypeptide	Contig_31 36434..42376 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_7352_1	exon_7352_1	Tribonema minus UTEX_B_3156	exon	Contig_31 36434..36525 +
exon_7352_2	exon_7352_2	Tribonema minus UTEX_B_3156	exon	Contig_31 36952..37086 +
exon_7352_3	exon_7352_3	Tribonema minus UTEX_B_3156	exon	Contig_31 37238..37409 +
exon_7352_4	exon_7352_4	Tribonema minus UTEX_B_3156	exon	Contig_31 38358..38541 +
exon_7352_5	exon_7352_5	Tribonema minus UTEX_B_3156	exon	Contig_31 39360..39582 +
exon_7352_6	exon_7352_6	Tribonema minus UTEX_B_3156	exon	Contig_31 40030..40903 +
exon_7352_7	exon_7352_7	Tribonema minus UTEX_B_3156	exon	Contig_31 41234..42376 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_7352	CDS_7352	Tribonema minus UTEX_B_3156	CDS	Contig_31 36434..36525 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_31:36434..42376+
coding sequence from alignment at Contig_31:36434..42376+

spliced messenger RNA

>mRNA_7352 ID=mRNA_7352|Name=jgi.p|Trimin1|348763|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2823bp|location=Sequence derived from alignment at Contig_31:36434..42376+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCAGCAGCAGAAGGTTCCGGAGATGGCGCCAGTGTTGCCGATGG
CGCCGGCTTGCACGCAGCCTCCAGCACCAACCCCTATATCATGGTGGTCT
CCAAGAAACTCAGGGCGCTGCGCAAGAAGGGCGAGAAGATACGGAAGACG
GAGGAGCAGGCAGCCAGTGGGAAGCAGCTCCACGACGAGCAGGTGGAGCT
CATCATGACCAAGGAGCTGGTCGAAAGGTCGGTGCTCGAGCACTCGACGA
TTTTGGCAATGCTGGAGGAAGTGGCCAAGGGGGAGGCAGCGGCGGCAGAG
GCGGAAAAGGCGGCGGAAGAAGCAGCAGCAGAGGCAGAGGCGGCGGAGCG
GGCGGCAGCGACATCAACGGCAGAAGACGAAGCCGCAGCGGAGGCAAGTG
CAGCGGAGCCGGAGGGCGAGGCGCTGCCGCTGATGCCTGCAGAAGTGGCG
GATGCCACCACCAACACGGCGGCGGTGGGGACGGCGGCGGCGAGCGTGCA
GACGGCGCCGCAGCAGGAGCCCGCAGCAGCGCTCAGCAAGCCGCGCGGCG
TGTCCAGCGCGCAGCAGACGGTGGCGGTGCCTGACGCGGCGCAGCCCGCT
GCTGCCGCCGCCACCGCCGCCGCCGCGGACGTCACGCGCAAGCTGCTGCG
CCTGCTGCACGCGTGGAGCTGGGCGGGCGGCGCGCACGCGCTGCCGGTGC
CGGTGCGCCTCTTCTGCGACGTCATCTTCGGCCGCGCGCGCCCGCCGCCG
CCGGAGGAGGCGGACTTTGAGGAGATCGTGCACGCCAACACGAAGCACGC
GCTGAGGTACGTCACGCAAGCGCAGGGGGAGTTCGGCGCGGGGGTCACGT
ACGTGCAGCTCGAGGCCATGGTCGAGGAGCTGTGCACAAAGTTCTCGCCC
GCGCCCGCCGCCGCCGCTGCCGCTGCCGCGCCGCCGCCCCAGGCGCAGCC
GGCGGCGGCCCGTCAGCCGGAGCAGGCCTCGAAGGCGCAAGCTGCGGAGC
CGCGCGCGGCGCAGGCGAAGCCCAGCAGGCCCCCGCAGGAGCAGCCGCAG
CAGCCGCCCGTGCAGAGCAGAGCGGAGCAGCTGAGGGGGGGGCAGGAGGG
GGGCGGAGGGGGGTCCGGCGGGGCGCAGGCGGGGGGGGCTGCGCGGGTGT
CGGACGGGCCAGCACGGGCGTCAGGAGAGGCGGCGGCGCAGTCTGCGCAC
CGCGGCGGCAGTGAGCACAGGGAGAGGGAACGCAGGAAGCAGGGGGAGGT
GAGGGTGCCTGCTGCGGCGGCGCCCGCACAGCCGCAGCGCACGGCTGCGC
CGGCGGGTGGCGGCGTGGTGCCGCAGCGGGCCACGGCGCCGCCATCGCCG
CCGCCGCAGCAGCGGCAGCAGCAGCAGCAGCAGGCACAGCGGCAGCGCGT
CGTGCAGCAGTTGCAGGAGCCGACGCAGCATCAGCAGCAGCTGCCACAGC
AGCAGCAGCAAGCTTTGCCGGGTGCACAACGTGCGCAGCAGCAGCAGCAG
AAGCAGCCTTCACCAGTGAAGCAGGAGCGGCTGCACCAGCCCTCGCAGGT
GCCGTCGGCCGCACAGGCAAAATCAGCTGCTCGGCCGCAGGGCGGCGCCG
CTGCTGCCAACATGAACAGCGGTCGCCGAGATGCTGACAAAGGTGCACAC
GGGACGAACGGCGTGTCTACCTCTGCCAAGGCTCCTGCGCCTCTGGCTGT
ACCCACTCTACAGGACCCACCCACGGCACCAGGTTGGGCAGATGAGCCCA
TGGACACATGGGCAGCCCCCGCAGGTGACGCTCCCACGCAGGGCAGAACA
GCCACTGCCACAATGCAGGCTGCGGATACACGGCGCGCGCCTCCTGGTCG
CGGCGACCGCAGAGATGGCGGCAGCAGCGGCAGTGCCGGCGGCAGCGGCG
GCGCCGGTGGCGGCGATGCGAGCGGCGGCAGCGGCGGCGGAGACGGCGAC
AGTGGCGGCAGGATGAAGCGCAGTGGCAGGGGCGGAGGCGCTCGCAAATC
AAAGCAGCAGACCAGTGATGGCGTTGGCGCTGCTGCTGCCGAGGGTGCGG
CCGCGGCTGCGCTGACAGATGTGCAGCCGCAAAAGCAGCAGCAGCAGCAG
CGGCGTAAGCCTTTGCCGGCACGGCAGGCGCCCGTGGCAGCTCCGCACGC
CACAGTCCCTGCGGCTGCTGAAGCCGCTGAACAGACTGCTGCCGCGGCGG
CACCGACAGCGATGGCAGCGACGCCCAAACCGCCTAGGCCTCAGCGGAAG
CCGACACGGCAGCAGCAGGATGGTGCCACTGCTGCGGCTCCAGCAGTCGG
CGAGGAGAACGGCAGCGGTGGCACAGCTCCGGCTGCTGTTGCGGCGAGCG
ACGGCGGCAGCGAAGGAGACAAGGCAGGGGTGCGCAGGAACCGGCGCGGC
GGCAGCGCGCGCAGAAGAGCAAAGCCTGGAGGCGAGGAGACTGCTTCCAC
TGCCATGCTGGATCAACAGCGGCAAAAGCAGGAGCGGGCACCAGCGCAGC
AGCAGCAGCAGCAGCAGCAGCGGCAGCAGCCGAGGCGACAGCCAGCACCT
GCAAAAGCCGCTGCAGCACCGCCCGCGGATGCCGCAGAACAGGCCAAGGC
CGCAGCTCGCAATGGCAGCGGCGGCAATGGCGGCAACGGCGGCGGCGGCA
ACGGCGGCGGCGGTGGCGGTGCAGGGGGGGCAGGAAGGGGGGATGGGCGC
CACAGGAAGCCTGGCAGTGGCCGCAACAGCAGAGGCACGGGCGGCGACGC
CGCGGCAAAGGATGGCCATATTGCCAGAGCTGAGGGCGGCACTCCCGCTG
GCCAGGCGCTGATGGCGGGGTAG

protein sequence of jgi.p|Trimin1|348763

>Trimin1|348763|estExt_Genemark1.C_Ctg_310006 ID=Trimin1|348763|estExt_Genemark1.C_Ctg_310006|Name=jgi.p|Trimin1|348763|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=941bp
MPAAAEGSGDGASVADGAGLHAASSTNPYIMVVSKKLRALRKKGEKIRKT
EEQAASGKQLHDEQVELIMTKELVERSVLEHSTILAMLEEVAKGEAAAAE
AEKAAEEAAAEAEAAERAAATSTAEDEAAAEASAAEPEGEALPLMPAEVA
DATTNTAAVGTAAASVQTAPQQEPAAALSKPRGVSSAQQTVAVPDAAQPA
AAAATAAAADVTRKLLRLLHAWSWAGGAHALPVPVRLFCDVIFGRARPPP
PEEADFEEIVHANTKHALRYVTQAQGEFGAGVTYVQLEAMVEELCTKFSP
APAAAAAAAAPPPQAQPAAARQPEQASKAQAAEPRAAQAKPSRPPQEQPQ
QPPVQSRAEQLRGGQEGGGGGSGGAQAGGAARVSDGPARASGEAAAQSAH
RGGSEHRERERRKQGEVRVPAAAAPAQPQRTAAPAGGGVVPQRATAPPSP
PPQQRQQQQQQAQRQRVVQQLQEPTQHQQQLPQQQQQALPGAQRAQQQQQ
KQPSPVKQERLHQPSQVPSAAQAKSAARPQGGAAAANMNSGRRDADKGAH
GTNGVSTSAKAPAPLAVPTLQDPPTAPGWADEPMDTWAAPAGDAPTQGRT
ATATMQAADTRRAPPGRGDRRDGGSSGSAGGSGGAGGGDASGGSGGGDGD
SGGRMKRSGRGGGARKSKQQTSDGVGAAAAEGAAAAALTDVQPQKQQQQQ
RRKPLPARQAPVAAPHATVPAAAEAAEQTAAAAAPTAMAATPKPPRPQRK
PTRQQQDGATAAAPAVGEENGSGGTAPAAVAASDGGSEGDKAGVRRNRRG
GSARRRAKPGGEETASTAMLDQQRQKQERAPAQQQQQQQQRQQPRRQPAP
AKAAAAPPADAAEQAKAAARNGSGGNGGNGGGGNGGGGGGAGGAGRGDGR
HRKPGSGRNSRGTGGDAAAKDGHIARAEGGTPAGQALMAG*

mRNA from alignment at Contig_31:36434..42376+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7352 ID=mRNA_7352|Name=jgi.p|Trimin1|348763|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5943bp|location=Sequence derived from alignment at Contig_31:36434..42376+ (Tribonema minus UTEX_B_3156 )
ATGCCCGCAGCAGCAGAAGGTTCCGGAGATGGCGCCAGTGTTGCCGATGG
CGCCGGCTTGCACGCAGCCTCCAGCACCAACCCCTATATCATGTGAGTAG
TCCTTCCTTCTAGGAGTGAAAAAAAGGCGGCTTCATCAAAATGGATCTTT
GCCGATGACAGCCGCGCATCAGAGTACAGTCTCTGCACGATCACTCTGTG
ATGTGTCATGGACGAACATACGGCTGATGGCACAACCAGCGCCTCACATT
GCGCTCGAGGTACTGTGTTCAGCTGTCATCCAATTTCAAAAACATAGACC
AGATAGGCGCCAACGCGCGACCCGGCAGTGCTGTTCAGCACATGCCAGCT
TGAGTCGCTGATCATGCTTTCGACTCCGCGACAACACCACCACACTGTCT
TCGTCACAATACTCAAGTTGGCAGGTGTTGGCAGCCGGCGTGCTCGACAA
AAAAGCGCTTACCGTATAGCGCGTGTTTCGTTTTTGCGCCTTGTTGGCGA
CGTCGCCGCTGTGTGCAGGGTGGTCTCCAAGAAACTCAGGGCGCTGCGCA
AGAAGGGCGAGAAGATACGGAAGACGGAGGAGCAGGCAGCCAGTGGGAAG
CAGCTCCACGACGAGCAGGTGGAGCTCATCATGACCAAGGAGCTGGTCGA
AAGGTACACCACACGCCGCTGCTCCATGCGCGAACCCACTGCACGACACA
GAAATGAACTTGAAGCATGGAACTATGTCCCCAGTCTCGCCTTCACATGC
AGTAAACCACACACACCCTCATGCCCACCAGCGATCGCCGGGCCCTCCTC
GCAGGTCGGTGCTCGAGCACTCGACGATTTTGGCAATGCTGGAGGAAGTG
GCCAAGGGGGAGGCAGCGGCGGCAGAGGCGGAAAAGGCGGCGGAAGAAGC
AGCAGCAGAGGCAGAGGCGGCGGAGCGGGCGGCAGCGACATCAACGGCAG
AAGACGAAGCCGCAGCGGAGGCAAGTGTGAGCTGCTGGCTCTGCATTCCG
CTTTGTGCAAACTTTCAGCACACGACAGCTTGCTGTGGCGGTGTGGTGGT
ACGTCGCAGTGCTACAGTATACCAAGTGGTGATAGAACTTCAAGCTGCAT
GGCCATACTGGCAGCAGCAGCCTTTATTGACTATACGAAGAATCCTTTGT
ATGGCTCTTTGACTGTATATCACACAGAGTTGGTGATCTTTTTGCACGTG
GTTGATGGCGTGCTTGTAGGACCAGCTCCAAGTTGTCTCAACGCGCTCCT
TGCATGAATAATCCTGACTTTGTGGTAGACATGATCCTGACCGTAGCATC
ACTCATCGCCCTCCTTACTCAAGCAATTCCGTTTGGTTTTGTTTTGTGGA
CAGTCCTTGTGGTATGAGAAACGTTTTGGCACGCGTGACCCAGCCGCTGA
GTCCTAGCCGATGGTGCCAGTTGGATGGGGGGTTCAGCCCGAGAAATCAG
GCTCAGGTCAAGCGCACGCTATGCCTTCTAAATAAGTTTGACCCACTATG
ATAAGTAGTCAGATTCCTCAATGAAGCCCGCTCTGCGCGAACAAGCCCGC
AAAGCATGTCAACTTCAACTTCAGCAGACAGGCACCTCTCCTTTTAAGTG
CGACTGGCATCTGCCACAACTCCGCTTGTGCGGCAGTGCTCCGCGAGAGA
ATGCTGCTGAAAGCACCCCAATCGGCCCTCAAACACCAGCACCTGACCGT
ATGCTGGCTCTCAACATAGGCCTGCCGGCAGCCCTGTGAGAAACCACCGC
TCAATGCCCCCCCCCCCCCACACCAAACCGCCGCTCGAAGACCGGAACCC
CCACTGTGTGCTGTCTACAATGGAAACGGACCAAAAGGATGTAGAGCTCT
AGGTGACAAGGTGTGGTTAGCCGCAAATGCCTTCCACCGATCACCGTGGT
CGCCGCTGCAATGATGGCCTGCAGGCAGCGGAGCCGGAGGGCGAGGCGCT
GCCGCTGATGCCTGCAGAAGTGGCGGATGCCACCACCAACACGGCGGCGG
TGGGGACGGCGGCGGCGAGCGTGCAGACGGCGCCGCAGCAGGAGCCCGCA
GCAGCGCTCAGCAAGCCGCGCGGCGTGTCCAGCGCGCAGCAGACGGTGGC
GGTGCCTGGTAGGTTCTGAGAGTCTGCCATGCACTTGAAGATGTTCTTGA
AGTTTCTCATCAGCTTGCCCTTGGTGCGACGGTCGTCGGTCAGTGTGCGA
CAGCCAGCAGCTGCGCACTCAAATCTGTGCCTTAATTCAACTGGGCGTTG
GGCGAGAGCAGTGCCAAGTGAGTAAACGCTTGCCGATCTGTCACATCTTC
AAGTGCTATTTAAAGTTTGTCACCAGGCACATATGCAGCAGCCTGCAGAA
GCATCCGCGAAGTTTTTTTACGTCATATTGGACGGCTGATGGTGGTAGAG
CCTGGCGTGCAGTCCCTGCCAGATCTGAGCGCGAAAAGCAGCCACCTGCT
TCAGAAATCTCGTCGGCGCCACGGCAACTCGCGTGCAGGAAGCTGCGGCC
GTGTCGTTGCAAGCTTGCGGGAGAATCAAGCTCGTTGGAAACAGCGGTTG
ACCAGGACATGCAGTTTAGCAGTTGCAGGACACTGGCAATGCGTACAGGC
TATGCGCACTCTGCAGAGGTACTGCTGCATGCGTGAAGCCGGGCGGGCGG
CGCACACGCGCCTTTCCTCCAAAACTTCAGTGCTCAACCATATGACTACG
CCCTGCAGGCTGGTGCGCTATCGGCGCGTCTTGCCCACAAAGCCCGCTTT
CGCTGCGTCGCGCATGCGGTGTCGCCCGCCACCACCGCCGCCGCCGCTGC
CGCAGACGTCGGAGCGGCGCGCGCGCGCTGCCGCAGTTGCAGTGCTGCAC
AATGATCCCCGCACCCAGAATGCCCCTGCGCTGTCGCCGCAACTCACCCG
CCACGCGCGCTGTCGCCCTGCCGCAGACGCGGCGCAGCCCGCTGCTGCCG
CCGCCACCGCCGCCGCCGCGGACGTCACGCGCAAGCTGCTGCGCCTGCTG
CACGCGTGGAGCTGGGCGGGCGGCGCGCACGCGCTGCCGGTGCCGGTGCG
CCTCTTCTGCGACGTCATCTTCGGCCGCGCGCGCCCGCCGCCGCCGGAGG
AGGCGGACTTTGAGGAGATCGTGCACGCCAACACGAAGCACGCGCTGAGG
TGCGTTGTACGTACGCACTACCGCATCGCTTTGACTTCACTGAGGATTCC
TCCTGTGCGCTGCAGCATGCTCCAAGCTGCGACAGCGCGCAGGTGCTCTT
GCGCGAATGTGCGATGCGCGCAGTTCTGCGCCATTGACCATGCTTGTAGC
CCGGCTTTGCGATGCGTGGTACGCAGCTGGTAGCAGCTATGCTGAAGCGG
CAGCTGACGATTGGTCAGTGGCTGCTGTGTACTGCTCATTAGCGCTTGTT
TAGAAGGCCGCACTGTGTATTGTCTTTCGTGCGGCTACACTTCTGAAGAG
AGTGCGAGGTACTTCTGCTGTCCCAGCGGCACTGGGATTGGACGGCTTCT
ACTGCTGCTCATTGTGACGCTTATTCCTGATGCCCCTCCTCAAGTTGATA
TTTTGCTCATTTAAGCATGCGCGCCTCCCGCCGCGCGCCACCGCAGGTAC
GTCACGCAAGCGCAGGGGGAGTTCGGCGCGGGGGTCACGTACGTGCAGCT
CGAGGCCATGGTCGAGGAGCTGTGCACAAAGTTCTCGCCCGCGCCCGCCG
CCGCCGCTGCCGCTGCCGCGCCGCCGCCCCAGGCGCAGCCGGCGGCGGCC
CGTCAGCCGGAGCAGGCCTCGAAGGCGCAAGCTGCGGAGCCGCGCGCGGC
GCAGGCGAAGCCCAGCAGGCCCCCGCAGGAGCAGCCGCAGCAGCCGCCCG
TGCAGAGCAGAGCGGAGCAGCTGAGGGGGGGGCAGGAGGGGGGCGGAGGG
GGGTCCGGCGGGGCGCAGGCGGGGGGGGCTGCGCGGGTGTCGGACGGGCC
AGCACGGGCGTCAGGAGAGGCGGCGGCGCAGTCTGCGCACCGCGGCGGCA
GTGAGCACAGGGAGAGGGAACGCAGGAAGCAGGGGGAGGTGAGGGTGCCT
GCTGCGGCGGCGCCCGCACAGCCGCAGCGCACGGCTGCGCCGGCGGGTGG
CGGCGTGGTGCCGCAGCGGGCCACGGCGCCGCCATCGCCGCCGCCGCAGC
AGCGGCAGCAGCAGCAGCAGCAGGCACAGCGGCAGCGCGTCGTGCAGCAG
TTGCAGGAGCCGACGCAGCATCAGCAGCAGCTGCCACAGCAGCAGCAGCA
AGCTTTGCCGGGTGCACAACGTGCGCAGCAGCAGCAGCAGAAGCAGCCTT
CACCAGTGAAGCAGGAGCGGCTGCACCAGCCCTCGCAGGTGCCGTCGGCC
GCACAGGCAAAATCAGCTGCTCGGCCGCAGGGCGGCGCCGCTGCTGCCAA
CATGAACAGCGGTCGCCGAGATGCTGACAAAGGTGCACACGGGACGAACG
GCGTGTCTACCTCTGCCAAGGTGAGAGCACTGTACTGACGCCGTGATGTG
TGTGGTTTTTGCCGCAGTATGAAACTTCAGCATCAAAGTTCAACTTGTTG
ACAGCAGGTAATAATCCAAGCTCAACCTCCGCTGTGTTGTTGCTCGCTGC
TGTTCTGCAGAGCCTGTTAAGATTGGCCACCTGCTTGTATCCTGCAGTGC
AACCGCTGTCGACCAGCAAATGCTGGCTCTTATGACACAGTCAAATGCCA
GAAACATGCCAGTTGCCACAATTGCTTGCTACCACGCCAAGCTGCGGTGT
ATGTTGCCGCTGACACAGTCAGCACTGCGCCTCTCGTCGCTCTGCTGCAG
GCTCCTGCGCCTCTGGCTGTACCCACTCTACAGGACCCACCCACGGCACC
AGGTTGGGCAGATGAGCCCATGGACACATGGGCAGCCCCCGCAGGTGACG
CTCCCACGCAGGGCAGAACAGCCACTGCCACAATGCAGGCTGCGGATACA
CGGCGCGCGCCTCCTGGTCGCGGCGACCGCAGAGATGGCGGCAGCAGCGG
CAGTGCCGGCGGCAGCGGCGGCGCCGGTGGCGGCGATGCGAGCGGCGGCA
GCGGCGGCGGAGACGGCGACAGTGGCGGCAGGATGAAGCGCAGTGGCAGG
GGCGGAGGCGCTCGCAAATCAAAGCAGCAGACCAGTGATGGCGTTGGCGC
TGCTGCTGCCGAGGGTGCGGCCGCGGCTGCGCTGACAGATGTGCAGCCGC
AAAAGCAGCAGCAGCAGCAGCGGCGTAAGCCTTTGCCGGCACGGCAGGCG
CCCGTGGCAGCTCCGCACGCCACAGTCCCTGCGGCTGCTGAAGCCGCTGA
ACAGACTGCTGCCGCGGCGGCACCGACAGCGATGGCAGCGACGCCCAAAC
CGCCTAGGCCTCAGCGGAAGCCGACACGGCAGCAGCAGGATGGTGCCACT
GCTGCGGCTCCAGCAGTCGGCGAGGAGAACGGCAGCGGTGGCACAGCTCC
GGCTGCTGTTGCGGCGAGCGACGGCGGCAGCGAAGGAGACAAGGCAGGGG
TGCGCAGGAACCGGCGCGGCGGCAGCGCGCGCAGAAGAGCAAAGCCTGGA
GGCGAGGAGACTGCTTCCACTGCCATGCTGGATCAACAGCGGCAAAAGCA
GGAGCGGGCACCAGCGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGC
CGAGGCGACAGCCAGCACCTGCAAAAGCCGCTGCAGCACCGCCCGCGGAT
GCCGCAGAACAGGCCAAGGCCGCAGCTCGCAATGGCAGCGGCGGCAATGG
CGGCAACGGCGGCGGCGGCAACGGCGGCGGCGGTGGCGGTGCAGGGGGGG
CAGGAAGGGGGGATGGGCGCCACAGGAAGCCTGGCAGTGGCCGCAACAGC
AGAGGCACGGGCGGCGACGCCGCGGCAAAGGATGGCCATATTGCCAGAGC
TGAGGGCGGCACTCCCGCTGGCCAGGCGCTGATGGCGGGGTAG

Coding sequence (CDS) from alignment at Contig_31:36434..42376+

>mRNA_7352 ID=mRNA_7352|Name=jgi.p|Trimin1|348763|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2823bp|location=Sequence derived from alignment at Contig_31:36434..42376+ (Tribonema minus UTEX_B_3156 )
ATGCCCGCAGCAGCAGAAGGTTCCGGAGATGGCGCCAGTGTTGCCGATGG
CGCCGGCTTGCACGCAGCCTCCAGCACCAACCCCTATATCATGGTGGTCT
CCAAGAAACTCAGGGCGCTGCGCAAGAAGGGCGAGAAGATACGGAAGACG
GAGGAGCAGGCAGCCAGTGGGAAGCAGCTCCACGACGAGCAGGTGGAGCT
CATCATGACCAAGGAGCTGGTCGAAAGGTCGGTGCTCGAGCACTCGACGA
TTTTGGCAATGCTGGAGGAAGTGGCCAAGGGGGAGGCAGCGGCGGCAGAG
GCGGAAAAGGCGGCGGAAGAAGCAGCAGCAGAGGCAGAGGCGGCGGAGCG
GGCGGCAGCGACATCAACGGCAGAAGACGAAGCCGCAGCGGAGGCAAGTG
CAGCGGAGCCGGAGGGCGAGGCGCTGCCGCTGATGCCTGCAGAAGTGGCG
GATGCCACCACCAACACGGCGGCGGTGGGGACGGCGGCGGCGAGCGTGCA
GACGGCGCCGCAGCAGGAGCCCGCAGCAGCGCTCAGCAAGCCGCGCGGCG
TGTCCAGCGCGCAGCAGACGGTGGCGGTGCCTGACGCGGCGCAGCCCGCT
GCTGCCGCCGCCACCGCCGCCGCCGCGGACGTCACGCGCAAGCTGCTGCG
CCTGCTGCACGCGTGGAGCTGGGCGGGCGGCGCGCACGCGCTGCCGGTGC
CGGTGCGCCTCTTCTGCGACGTCATCTTCGGCCGCGCGCGCCCGCCGCCG
CCGGAGGAGGCGGACTTTGAGGAGATCGTGCACGCCAACACGAAGCACGC
GCTGAGGTACGTCACGCAAGCGCAGGGGGAGTTCGGCGCGGGGGTCACGT
ACGTGCAGCTCGAGGCCATGGTCGAGGAGCTGTGCACAAAGTTCTCGCCC
GCGCCCGCCGCCGCCGCTGCCGCTGCCGCGCCGCCGCCCCAGGCGCAGCC
GGCGGCGGCCCGTCAGCCGGAGCAGGCCTCGAAGGCGCAAGCTGCGGAGC
CGCGCGCGGCGCAGGCGAAGCCCAGCAGGCCCCCGCAGGAGCAGCCGCAG
CAGCCGCCCGTGCAGAGCAGAGCGGAGCAGCTGAGGGGGGGGCAGGAGGG
GGGCGGAGGGGGGTCCGGCGGGGCGCAGGCGGGGGGGGCTGCGCGGGTGT
CGGACGGGCCAGCACGGGCGTCAGGAGAGGCGGCGGCGCAGTCTGCGCAC
CGCGGCGGCAGTGAGCACAGGGAGAGGGAACGCAGGAAGCAGGGGGAGGT
GAGGGTGCCTGCTGCGGCGGCGCCCGCACAGCCGCAGCGCACGGCTGCGC
CGGCGGGTGGCGGCGTGGTGCCGCAGCGGGCCACGGCGCCGCCATCGCCG
CCGCCGCAGCAGCGGCAGCAGCAGCAGCAGCAGGCACAGCGGCAGCGCGT
CGTGCAGCAGTTGCAGGAGCCGACGCAGCATCAGCAGCAGCTGCCACAGC
AGCAGCAGCAAGCTTTGCCGGGTGCACAACGTGCGCAGCAGCAGCAGCAG
AAGCAGCCTTCACCAGTGAAGCAGGAGCGGCTGCACCAGCCCTCGCAGGT
GCCGTCGGCCGCACAGGCAAAATCAGCTGCTCGGCCGCAGGGCGGCGCCG
CTGCTGCCAACATGAACAGCGGTCGCCGAGATGCTGACAAAGGTGCACAC
GGGACGAACGGCGTGTCTACCTCTGCCAAGGCTCCTGCGCCTCTGGCTGT
ACCCACTCTACAGGACCCACCCACGGCACCAGGTTGGGCAGATGAGCCCA
TGGACACATGGGCAGCCCCCGCAGGTGACGCTCCCACGCAGGGCAGAACA
GCCACTGCCACAATGCAGGCTGCGGATACACGGCGCGCGCCTCCTGGTCG
CGGCGACCGCAGAGATGGCGGCAGCAGCGGCAGTGCCGGCGGCAGCGGCG
GCGCCGGTGGCGGCGATGCGAGCGGCGGCAGCGGCGGCGGAGACGGCGAC
AGTGGCGGCAGGATGAAGCGCAGTGGCAGGGGCGGAGGCGCTCGCAAATC
AAAGCAGCAGACCAGTGATGGCGTTGGCGCTGCTGCTGCCGAGGGTGCGG
CCGCGGCTGCGCTGACAGATGTGCAGCCGCAAAAGCAGCAGCAGCAGCAG
CGGCGTAAGCCTTTGCCGGCACGGCAGGCGCCCGTGGCAGCTCCGCACGC
CACAGTCCCTGCGGCTGCTGAAGCCGCTGAACAGACTGCTGCCGCGGCGG
CACCGACAGCGATGGCAGCGACGCCCAAACCGCCTAGGCCTCAGCGGAAG
CCGACACGGCAGCAGCAGGATGGTGCCACTGCTGCGGCTCCAGCAGTCGG
CGAGGAGAACGGCAGCGGTGGCACAGCTCCGGCTGCTGTTGCGGCGAGCG
ACGGCGGCAGCGAAGGAGACAAGGCAGGGGTGCGCAGGAACCGGCGCGGC
GGCAGCGCGCGCAGAAGAGCAAAGCCTGGAGGCGAGGAGACTGCTTCCAC
TGCCATGCTGGATCAACAGCGGCAAAAGCAGGAGCGGGCACCAGCGCAGC
AGCAGCAGCAGCAGCAGCAGCGGCAGCAGCCGAGGCGACAGCCAGCACCT
GCAAAAGCCGCTGCAGCACCGCCCGCGGATGCCGCAGAACAGGCCAAGGC
CGCAGCTCGCAATGGCAGCGGCGGCAATGGCGGCAACGGCGGCGGCGGCA
ACGGCGGCGGCGGTGGCGGTGCAGGGGGGGCAGGAAGGGGGGATGGGCGC
CACAGGAAGCCTGGCAGTGGCCGCAACAGCAGAGGCACGGGCGGCGACGC
CGCGGCAAAGGATGGCCATATTGCCAGAGCTGAGGGCGGCACTCCCGCTG
GCCAGGCGCTGATGGCGGGGTAG