mRNA_7382 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YXK1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK1_9STRA) HSP 1 Score: 518 bits (1333), Expect = 5.160e-186 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1
Query: 1 QVVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEYAADGVKGKGXXXXXHGTQ 741
QVVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEYAADGVKGKGXXXXXHGTQ
Sbjct: 1 QVVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEYAADGVKGKGXXXXXHGTQ 247
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YW31_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW31_9STRA) HSP 1 Score: 299 bits (765), Expect = 1.220e-99 Identity = 134/228 (58.77%), Postives = 173/228 (75.88%), Query Frame = 1
Query: 4 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEY 687
VVLV+Q ++DY +LQ +G+GRYD LN FID WK DGNRRL IRPMHEFNGDWY WGT+RGG NSK FKRA+ HV+ +F++RGAN MQL+YNC + +D + F +WYPG + VD++LCSAYNR+G++ WE+F++VFG GY +MA++PG K LG+ E G+T WGG K WI DAF LV +YTRV+E WLL+NK+G DW+LNT +V AFG MRK+E+
Sbjct: 16 VVLVVQFDTYDYTNLQEIGDGRYDASLNQFIDAWKDDGNRRLSIRPMHEFNGDWYPWGTFRGGGNSKDNFKRAFQHVAGVFKRRGANVKMQLAYNCDSAQNDGSPFADWYPGDDVVDIILCSAYNRSGLEG--HGWESFDEVFGGGYDRMASIPGNKPLGLGETGSTDWGG-DKPAWISDAFNQLVYKYTRVQECHWLLENKEG--DWDLNTDGDVWAFGDGMRKFEF 238
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA) HSP 1 Score: 298 bits (762), Expect = 6.890e-99 Identity = 135/228 (59.21%), Postives = 171/228 (75.00%), Query Frame = 1
Query: 4 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEY 687
VVLV + Y +LQA+G+G++D LN FID+WKADGNR++ IRPMHEFNGDWY WGTYR G NS+A FKRA+ HV+ +F+ RGANA QL YNCVNP +D TSF W+PG + VDM+LCS YNRAG+DS+HQ W++F V+ GY +MAAL G K LGVAE +T+W +SK QWI+DAF ALVN++TRVE+ W L NKDG+ W LN+ E AFG S+ +Y +
Sbjct: 34 VVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGN--WGLNSDDERHAFGDSINQYSW 258
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YS57_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS57_9STRA) HSP 1 Score: 282 bits (722), Expect = 1.340e-90 Identity = 132/226 (58.41%), Postives = 162/226 (71.68%), Query Frame = 1
Query: 4 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 681
VVL+ + Y LQA+G+G +D LN FIDEW+ADGNR + IRPMHEFNGDWY GTYR G NS FKRAY HV +FR RGANA QL+YNC N +D SF W+PG VDMV+CS YNRAG+D+DHQKW++F V+ GY +MAALPG K LG+AEM +T+W +SK QWIRDAF A+V ++TRV + W L NK+G DW LN+ +E AFG S+ KY
Sbjct: 107 VVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTG-NSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEG--DWGLNSDAERQAFGDSVNKY 329
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA) HSP 1 Score: 273 bits (699), Expect = 4.440e-89 Identity = 127/217 (58.53%), Postives = 159/217 (73.27%), Query Frame = 1
Query: 37 YRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEY 687
Y +LQ + +G +D QLN FID+ + GN+++ IR +HEFNGDWY WGTYR G N FKRA+ HV +FR RGAN QL+YNC NPNDD SF +WYPG + VDM+LCS YNRAG+DSDH W++F +VF GY +MA+L G K LGVAE +TSWGG KAQWIRDAF A+VNQ+TRVE+ W L NK +GDW+LN+ SE AFG S+ +Y +
Sbjct: 63 YSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDG-NDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINK--AGDWDLNSDSERHAFGDSLNEYSW 275
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA) HSP 1 Score: 261 bits (666), Expect = 1.330e-82 Identity = 121/229 (52.84%), Postives = 160/229 (69.87%), Query Frame = 1
Query: 1 QVVLVIQ-LRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTS-FKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 681
Q V+V++ L + + +L+ + G YDK L F+DE DGNR + +RP+HEFNGDWY WGTYRGG N+K FKRA+ HV + +GAN QL+YNCVN +DQT+ F +W+PG ++VDMV+CS YNRAG D+DHQ+W TF +VFG Y+QM LPG K LGV E ++ + KAQWIRDAF VN Y R+E W LQNK+ G W+LN+ E+AAFG+S+ +Y
Sbjct: 118 QSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDADHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNTYPRIEHVTWFLQNKN-DGRWDLNSPEEIAAFGESLIEY 345
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA) HSP 1 Score: 249 bits (636), Expect = 1.670e-78 Identity = 120/228 (52.63%), Postives = 149/228 (65.35%), Query Frame = 1
Query: 1 QVVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVN-PNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 681
+VVLV+Q +L+ +G+G YDK L F DE DGNR + +RPMHEFNGDWY WGTY GG+N+ F RAY HV ++ +GAN QL YNCVN ND +T F W+PG + VDMV+CSAYNRAG D H +W+T+ VF GY QMAALP LGV EMGT G KA WIRDAF A Y RVE+ W L++KD G+W+LN+ E+ AF S+ +Y
Sbjct: 76 KVVLVVQFLDTLTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFHTQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPTLYPRVEQITWFLEDKD-DGEWDLNSADEIEAFRDSLLQY 302
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA) HSP 1 Score: 250 bits (638), Expect = 9.570e-76 Identity = 117/214 (54.67%), Postives = 144/214 (67.29%), Query Frame = 1
Query: 43 SLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTS-FKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 681
+LQ +G+G YD L FIDE K DGNR + IRPMHEFNGDWY WGTY GG+N+ F RA+ H+ +F + AN QL+YNC N DD T+ F W+PG E+VDMV+CS YNRAG D +H +W TF+ V+ Y QMAALPG K LGV EM +G + KAQWIRDAF +TRV + W LQNKD G W+LNT E+ AFG +R+Y
Sbjct: 98 NLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDENHMEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDFGDYDKAQWIRDAFADFDTTFTRVTQVTWFLQNKD-DGRWDLNTPDEIQAFGDCLREY 310
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YZR6_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR6_9STRA) HSP 1 Score: 251 bits (641), Expect = 3.580e-75 Identity = 114/192 (59.38%), Postives = 141/192 (73.44%), Query Frame = 1
Query: 4 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRV 579
VVLV + Y +LQA+G+G +D LN FIDEWKADGNR + IRPMHEFNGDWY WGTYR G N +A F+RA+ HV+ +F+ RGA A MQLSYNC N + +F EW+PG + VDMVLCS YNRAG DS H W++F VF GY +MAAL G K LGVAE +T+W +SK QWI+DAF A+VN++TR+
Sbjct: 325 VVLVPEFYDGSYANLQAIGDGAFDSYLNKFIDEWKADGNRAMWIRPMHEFNGDWYSWGTYRSG-NDRAKFQRAFKHVAYVFKNRGAQAKMQLSYNCDNARGENRNFTEWFPGTDVVDMVLCSGYNRAGTDSYHMSWKSFTDVFTPGYNRMAALSGNKPLGVAETSSTTWQSNSKPQWIKDAFYAVVNKFTRI 515
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA) HSP 1 Score: 256 bits (654), Expect = 1.330e-74 Identity = 118/229 (51.53%), Postives = 154/229 (67.25%), Query Frame = 1
Query: 1 QVVLVIQLRSHDY-RSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTS-FKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 681
QVV+V + ++ +L +G G+YD L F+DE KADGN+ + IRPMHEFNGDWY WGTY GG N+K F RA+ HV +F + AN QL+YNC N DD T+ F +W+PG +VDMV+CS YNRAG D +H +W TF+ V+G Y+QM ALPG K LGV EM + G+ KAQWI DAF VN Y RV++ W LQNK+G G W+LN+ ++AAF ++ Y
Sbjct: 1086 QVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDENHMEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQVTWFLQNKEGDGRWDLNSPEQIAAFANGLKLY 1314 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164426 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7382 ID=mRNA_7382|Name=jgi.p|Trimin1|164426|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=744bp|location=Sequence derived from alignment at Contig_31:406327..408642+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGGTCGTCCTCGTCATCCAGCTGCGCTCGCACGACTACCGCTCCCTTCAback to top protein sequence of jgi.p|Trimin1|164426 >Trimin1|164426|e_gw1.31.125.1 ID=Trimin1|164426|e_gw1.31.125.1|Name=jgi.p|Trimin1|164426|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp QVVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEback to top mRNA from alignment at Contig_31:406327..408642+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7382 ID=mRNA_7382|Name=jgi.p|Trimin1|164426|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2316bp|location=Sequence derived from alignment at Contig_31:406327..408642+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_31:406327..408642+ >mRNA_7382 ID=mRNA_7382|Name=jgi.p|Trimin1|164426|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=744bp|location=Sequence derived from alignment at Contig_31:406327..408642+ (Tribonema minus UTEX_B_3156 )back to top |