mRNA_7387 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164373
Unique NamemRNA_7387
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164373 vs. uniprot
Match: A0A835Z5E8_9STRA (S-adenosylmethionine decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E8_9STRA)

HSP 1 Score: 284 bits (727), Expect = 4.700e-97
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 
Query:    1 MRVPIQRTTVPQSSPLIRAHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVHHKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVHRVD 429
            MRVPIQRTTVPQSSPLIRAHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVHHKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVHRVD
Sbjct:    1 MRVPIQRTTVPQSSPLIRAHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVHHKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVHRVD 143
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BLAST of jgi.p|Trimin1|164373 vs. uniprot
Match: A0A7S2HE01_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HE01_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.410e-40
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 1 
Query:   55 AHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVHHKAVVLGTRGE--SPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRF 414
            AHGSHIMLDFT ++    EGA   ME++R ++RE GVREVHHK VVLG  G+  SPPGFTA VLIDESHVTAHCY+++GWLA+DVFTCG  ST  +A AI+  + +L P   L+   + PRF
Sbjct:    9 AHGSHIMLDFTGFFCEASEGALKTMEVIRESVREAGVREVHHKTVVLGGDGDALSPPGFTACVLIDESHVTAHCYSEKGWLAVDVFTCGSHSTEDLARAIQNRLLKLEPALYLRSYFNVPRF 130
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BLAST of jgi.p|Trimin1|164373 vs. uniprot
Match: K8YRB4_NANGC (S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRB4_NANGC)

HSP 1 Score: 130 bits (326), Expect = 3.670e-34
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:   46 LIRAHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVHHKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVH 420
            +I+AHG H+ LD+T +++  ++GA   + LVRAA+RE GVREVH   VVLG  G SPPGFT + LIDESHV+AHCY+++GWLALDVFTCG    A +A  +   +    P   L +R +  RF+H
Sbjct:   91 VIKAHGRHLTLDYTSFFVDAQDGATMTLALVRAAVREAGVREVHSHVVVLGDDGLSPPGFTGICLIDESHVSAHCYSEKGWLALDVFTCGPTDPAEIADKLHQRLTDAVPGLHLVRRMAHDRFLH 215
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BLAST of jgi.p|Trimin1|164373 vs. uniprot
Match: A0A2E4BIU8_9EURY (Uncharacterized protein n=3 Tax=Archaea TaxID=2157 RepID=A0A2E4BIU8_9EURY)

HSP 1 Score: 118 bits (295), Expect = 1.640e-31
Identity = 57/127 (44.88%), Postives = 87/127 (68.50%), Query Frame = 1 
Query:   52 RAHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVH-HKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVHRVD 429
            +AHGSH+M+D+T+++    E  + +++L+ +A+     + VH H  +  G    SPPGF AVVL+DESH +AHCY+D+GWLA+D FTCGG +   +   I+  +R+LSP  VL+QR +A RF+HR +
Sbjct:    3 KAHGSHVMVDYTDFFSSTXELGKTMLKLMESAIDNSAAKRVHSHIEIFDGVT--SPPGFAAVVLLDESHFSAHCYSDKGWLAIDCFTCGGTNAEAIVDEIDKQLRQLSPTIVLEQRTTANRFLHRGE 127
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BLAST of jgi.p|Trimin1|164373 vs. uniprot
Match: A0A2D6U513_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2D6U513_9EURY)

HSP 1 Score: 112 bits (281), Expect = 2.160e-29
Identity = 54/127 (42.52%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:   52 RAHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVH-HKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVHRVD 429
            + HG H+M+D+TE++    E  + +++L+ +A+     + VH H  +  G    SPPGF AV+L+DESH +AHCY+D+GWLA+D FTCGGA    +   ++  ++RLSP  VL+QR +A RF++R +
Sbjct:    3 KXHGFHVMVDYTEFFPNTPEXGKTMLKLMESAIDNSAAKRVHSHIEIFDGVT--SPPGFAAVILLDESHFSAHCYSDKGWLAIDCFTCGGADAEAIVDEMDQQLKRLSPTIVLEQRTTANRFLNRGE 127
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BLAST of jgi.p|Trimin1|164373 vs. uniprot
Match: R1EM75_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EM75_EMIHU)

HSP 1 Score: 110 bits (275), Expect = 6.150e-28
Identity = 63/136 (46.32%), Postives = 79/136 (58.09%), Query Frame = 1 
Query:   19 RTTVPQSSPLIRAHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVHHKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGG-ASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVHR 423
            R T+ + S L  AHGSH++LDF  + + P       +  + AA    G   VH K V+LG  G +PPGFTA VL+DESH TAHCY++ GWLA+DVFTCG  A T   A A+   V    P     Q AS  RF+HR
Sbjct:   19 RITLNKRSALA-AHGSHVVLDFEGFAVEPAAAGRWTLATLEAAAAAHGATVVHSKLVLLGEDGTTPPGFTAAVLLDESHATAHCYSEHGWLAVDVFTCGAQADTLGFADAVRRKVEGYVPGVRCTQHASIDRFLHR 153
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BLAST of jgi.p|Trimin1|164373 vs. uniprot
Match: A0A7J4U1X6_9ARCH (Uncharacterized protein n=3 Tax=Archaea TaxID=2157 RepID=A0A7J4U1X6_9ARCH)

HSP 1 Score: 106 bits (265), Expect = 7.560e-27
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 1 
Query:   49 IRAHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVH-HKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVHRVD 429
            + AHG H+MLD T +  P  +  E +++++R A+     R+VH H     GT  +SPPGF AVVL+DESH++AHCY+DRGWLA+D FTCGG     +   +   +  + P  V+QQ  +  RF+H ++
Sbjct:   11 LAAHGQHVMLDLTGYTSPRPDEGEWMLDVLRQAVTRSTARQVHAHVEDFDGT--QSPPGFAAVVLLDESHLSAHCYSDRGWLAIDCFTCGGTDAQGIVDDVLEALVAVMPDLVVQQHRAVSRFMHPLE 136
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BLAST of jgi.p|Trimin1|164373 vs. uniprot
Match: A0A4D9D0W6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0W6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.440e-26
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:  133 LVRAALREEGVREVHHKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVH 420
            LVRAA+RE GVREVH   VVLG  G SPPGFT + LIDESHV+AHCY+++GWLALDVFTCG    A +A  +   +    P   L +R +  RF+H
Sbjct:    5 LVRAAVREAGVREVHSHVVVLGDDGLSPPGFTGICLIDESHVSAHCYSEKGWLALDVFTCGPTDPAEIADKLHQRLTDAVPGLRLVRRMAHDRFLH 100
[Close]
BLAST of jgi.p|Trimin1|164373 vs. uniprot
Match: A0A2E8V1C5_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E8V1C5_9EURY)

HSP 1 Score: 104 bits (259), Expect = 4.600e-26
Identity = 49/124 (39.52%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:   52 RAHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVH-HKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVH 420
            ++HGSH+++D++ ++   +   + ++ L+  A+     R VH H  +  G    SPPGF AVVL+DESH++AHCY+++GWLA+D FTCGG     +   I   +  LSP  +L++R+S+ RF+H
Sbjct:    3 KSHGSHVLVDYSNFFTDIKNIGKLILSLMEQAIDNSNARRVHSHVEIFDGI--VSPPGFAAVVLLDESHLSAHCYSEKGWLAIDCFTCGGTDAESIIDEIHQHIIHLSPETILEKRSSSDRFLH 124
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BLAST of jgi.p|Trimin1|164373 vs. uniprot
Match: A0A2E0HNN1_9EURY (Uncharacterized protein n=3 Tax=unclassified Euryarchaeota TaxID=115531 RepID=A0A2E0HNN1_9EURY)

HSP 1 Score: 104 bits (259), Expect = 4.600e-26
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:   46 LIRAHGSHIMLDFTEWWMPPEEGAEAVMELVRAALREEGVREVH-HKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALDVFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVH 420
            ++ +HGSHI++D+T ++   ++  + ++ ++  A+     R VH H  +  G    SPPGF A VL+DESH+TAHCY+D+GWLA+D FTCGG +   +   I   +  LSP   L++R +A RF+H
Sbjct:    1 MLNSHGSHILVDYTGFFPSAKDIGQLLLSIMEEAIDNSDARRVHSHVEIFDGVI--SPPGFAAAVLLDESHLTAHCYSDKGWLAIDCFTCGGTNAESIIDEIHQRLLTLSPEIKLEKRTTASRFLH 124
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164373 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5E8_9STRA4.700e-97100.00S-adenosylmethionine decarboxylase n=1 Tax=Tribone... [more]
A0A7S2HE01_9STRA1.410e-4059.84Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K8YRB4_NANGC3.670e-3451.20S-adenosylmethionine decarboxylase proenzyme n=1 T... [more]
A0A2E4BIU8_9EURY1.640e-3144.88Uncharacterized protein n=3 Tax=Archaea TaxID=2157... [more]
A0A2D6U513_9EURY2.160e-2942.52Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
R1EM75_EMIHU6.150e-2846.32Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7J4U1X6_9ARCH7.560e-2742.19Uncharacterized protein n=3 Tax=Archaea TaxID=2157... [more]
A0A4D9D0W6_9STRA4.440e-2656.25Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2E8V1C5_9EURY4.600e-2639.52Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A2E0HNN1_9EURY4.600e-2640.48Uncharacterized protein n=3 Tax=unclassified Eurya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:440399..441338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164373|e_gw1.31.107.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00299
KEGG ReactionR00178
KEGG ModuleM00034,M00133
KEGG Pathwayko00270,ko00330,ko01100,map00270,map00330,map01100
KEGG koko:K01611
EC4.1.1.50
Preferred namespeH
DescriptionCatalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
COG categoryE
Max annot lvl2|Bacteria
EggNOG OGsCOG1586@1|root,COG1586@2|Bacteria
Evalue7.05e-11
Seed ortholog1125863.JAFN01000001_gene280
Hectar predicted targeting categoryother localisation
TranscriptId164695
TrackFilteredModels1
ProteinId164373
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164373gene_7387Tribonema minus UTEX_B_3156 geneContig_31 440399..441338 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7387_1exon_7387_1Tribonema minus UTEX_B_3156 exonContig_31 440399..440581 +
exon_7387_2exon_7387_2Tribonema minus UTEX_B_3156 exonContig_31 441090..441338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7387CDS_7387Tribonema minus UTEX_B_3156 CDSContig_31 440399..440581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164373Trimin1|164373|e_gw1.31.107.1Tribonema minus UTEX_B_3156 polypeptideContig_31 440399..441338 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7387 ID=mRNA_7387|Name=jgi.p|Trimin1|164373|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_31:440399..441338+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGTGCCGATCCAGAGAACGACGGTGCCGCAGTCATCACCGCTCAT
CAGGGCCCACGGGAGCCACATTATGCTGGATTTTACAGAGTGGTGGATGC
CGCCAGAGGAGGGAGCGGAAGCTGTCATGGAGCTGGTCAGGGCCGCCCTT
CGGGAGGAGGGAGTACGCGAGGTGCATCACAAGGCGGTCGTGCTCGGCAC
GCGCGGCGAGTCACCGCCCGGCTTCACCGCGGTCGTCCTCATCGACGAGT
CGCACGTGACGGCGCACTGCTACGCGGACCGCGGCTGGCTCGCGCTCGAC
GTCTTCACGTGCGGCGGCGCGAGCACCGCGCGCGTCGCCGCGGCGATAGA
GGCCGGCGTGCGGCGCCTGAGCCCGCGCGCAGTGCTGCAGCAGCGCGCCT
CCGCGCCGCGCTTCGTGCACCGCGTCGACTGA
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protein sequence of jgi.p|Trimin1|164373

>Trimin1|164373|e_gw1.31.107.1 ID=Trimin1|164373|e_gw1.31.107.1|Name=jgi.p|Trimin1|164373|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
MRVPIQRTTVPQSSPLIRAHGSHIMLDFTEWWMPPEEGAEAVMELVRAAL
REEGVREVHHKAVVLGTRGESPPGFTAVVLIDESHVTAHCYADRGWLALD
VFTCGGASTARVAAAIEAGVRRLSPRAVLQQRASAPRFVHRVD*
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mRNA from alignment at Contig_31:440399..441338+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7387 ID=mRNA_7387|Name=jgi.p|Trimin1|164373|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=940bp|location=Sequence derived from alignment at Contig_31:440399..441338+ (Tribonema minus UTEX_B_3156 )
ATGCGAGTGCCGATCCAGAGAACGACGGTGCCGCAGTCATCACCGCTCAT
CAGGGCCCACGGGAGCCACATTATGCTGGATTTTACAGAGTGGTGGATGC
CGCCAGAGGAGGGAGCGGAAGCTGTCATGGAGCTGGTCAGGGCCGCCCTT
CGGGAGGAGGGAGTACGCGAGGTGCATCACAAGGTACAGAGCTGTGTTGC
TGGAGCTGTTGCTGATTGTGGAGCTGCCGAAATGCTTCATAATTTTGGTG
CATGCAGTTATCCTTGAGTTTGTTGCATGCAGCTATTATTGAGCTTGCTA
GTCATTCTTGAGTGTTGTGCTCACTATTGCTGGTTGCTGGTGAACCACGG
GACCTTTGAAAAAAAGCAACTCCAGCCCTGGAGCCTCGTGTGGTGCAGCA
ATGCGGCCGTTGTGCATGCAAGGCGCCCAATTTGAATCACCATTACATTA
TCACCGCTGGCGGCTGCGCCCTATTTCGCAGTCGTGACTGCGCAACCTAA
TGCTCAACACTCTCAGAGCCTTTGAGTCAAAGTCAGTCCATCGCAGCCTT
GGCATGCACACATCCTTACACAACCGCCAGTGCGACCTAGCGCCGCCCCA
CCTAGTATTGCTACTCGCCTCCTCAACTCCCTCCCCCCCTCTGCCGCCCC
CCCCCCCCCCCCCCCCCCCGCCGCTGCACGCGCGTGCGCAGGCGGTCGTG
CTCGGCACGCGCGGCGAGTCACCGCCCGGCTTCACCGCGGTCGTCCTCAT
CGACGAGTCGCACGTGACGGCGCACTGCTACGCGGACCGCGGCTGGCTCG
CGCTCGACGTCTTCACGTGCGGCGGCGCGAGCACCGCGCGCGTCGCCGCG
GCGATAGAGGCCGGCGTGCGGCGCCTGAGCCCGCGCGCAGTGCTGCAGCA
GCGCGCCTCCGCGCCGCGCTTCGTGCACCGCGTCGACTGA
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Coding sequence (CDS) from alignment at Contig_31:440399..441338+

>mRNA_7387 ID=mRNA_7387|Name=jgi.p|Trimin1|164373|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_31:440399..441338+ (Tribonema minus UTEX_B_3156 )
ATGCGAGTGCCGATCCAGAGAACGACGGTGCCGCAGTCATCACCGCTCAT
CAGGGCCCACGGGAGCCACATTATGCTGGATTTTACAGAGTGGTGGATGC
CGCCAGAGGAGGGAGCGGAAGCTGTCATGGAGCTGGTCAGGGCCGCCCTT
CGGGAGGAGGGAGTACGCGAGGTGCATCACAAGGCGGTCGTGCTCGGCAC
GCGCGGCGAGTCACCGCCCGGCTTCACCGCGGTCGTCCTCATCGACGAGT
CGCACGTGACGGCGCACTGCTACGCGGACCGCGGCTGGCTCGCGCTCGAC
GTCTTCACGTGCGGCGGCGCGAGCACCGCGCGCGTCGCCGCGGCGATAGA
GGCCGGCGTGCGGCGCCTGAGCCCGCGCGCAGTGCTGCAGCAGCGCGCCT
CCGCGCCGCGCTTCGTGCACCGCGTCGACTGA
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