mRNA_7395 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149934
Unique NamemRNA_7395
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149934 vs. uniprot
Match: A0A836CG50_9STRA (PWI domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG50_9STRA)

HSP 1 Score: 237 bits (605), Expect = 4.110e-79
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 
Query:    1 DKALMKKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEMLAQQA 369
            DKALMKKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEMLAQQA
Sbjct:    1 DKALMKKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEMLAQQA 123
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BLAST of jgi.p|Trimin1|149934 vs. uniprot
Match: D8LK57_ECTSI (PWI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK57_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.220e-39
Identity = 71/114 (62.28%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:   16 KKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEML 357
            KK+ +   FSK LE KV+MKKVN+ VM +WI  +IT LLG+EDDIV+GT IN+L   ++  +LDP+KLQLQLTGFLEK+T  FMEELW LL DAQ+  GGIP+AFL+ KK+E+L
Sbjct:   22 KKLLRRTKFSKVLEQKVNMKKVNMDVMQRWIAQRITSLLGFEDDIVVGTCINYL---SEEGKLDPKKLQLQLTGFLEKSTGMFMEELWGLLVDAQSSLGGIPSAFLQDKKQELL 132
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BLAST of jgi.p|Trimin1|149934 vs. uniprot
Match: A0A6H5KM37_9PHAE (PWI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM37_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.220e-38
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:   16 KKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEML 357
            KK+ +   FSK LE KV+MKKVN+ VM +WI  +IT LLG+EDDIV+GT +N+L   ++  +LDP+KLQLQLTGFLEK+T  FMEELW LL DAQ+  GGIP+AFL+ KK+E+L
Sbjct:   22 KKLLRRTKFSKVLEQKVNMKKVNMDVMQRWIAQRITSLLGFEDDIVVGTCVNYL---SEEGKLDPKKLQLQLTGFLEKSTGMFMEELWGLLVDAQSSLGGIPSAFLQDKKQELL 132
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BLAST of jgi.p|Trimin1|149934 vs. uniprot
Match: F0YH42_AURAN (PWI domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH42_AURAN)

HSP 1 Score: 121 bits (304), Expect = 5.070e-33
Identity = 60/128 (46.88%), Postives = 90/128 (70.31%), Query Frame = 1 
Query:    1 DKALMKKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADS-----ARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEMLAQQA 369
            DK L+KK+  A  F  +L+ K++++KVN+ VM +W+  ++T+LLG+EDD+V+    N L  + D+      R+DP++LQ+QLTGFL++   PF+ ELW LL DAQ  P GIP AF+E+KK E+L +QA
Sbjct:   12 DKKLIKKLTAAGKFDASLDQKLNIEKVNVEVMVRWVNERLTELLGFEDDVVVNLVENMLTQTQDAFSGQVKRVDPKQLQIQLTGFLDRQAAPFVAELWKLLLDAQDAPHGIPRAFVERKKAELLKRQA 139
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BLAST of jgi.p|Trimin1|149934 vs. uniprot
Match: W2Q1D2_PHYPN (PWI domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Q1D2_PHYPN)

HSP 1 Score: 125 bits (313), Expect = 1.880e-32
Identity = 65/113 (57.52%), Postives = 81/113 (71.68%), Query Frame = 1 
Query:   16 KKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEM 354
            KK+     F K  E  VDM+KV   V+++WIT +ITQLLG+EDDIV+  AIN LE   D  +LDP+KLQ+ LTGFLEK   PFMEELW LL  AQ+ P GIP+A L++KK+EM
Sbjct:   19 KKLLATMTFPKCFEQSVDMRKVQREVINQWITERITQLLGFEDDIVVSMAINLLETKVDE-KLDPKKLQVALTGFLEKQAGPFMEELWQLLLSAQSNPTGIPSAILDKKKQEM 130
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BLAST of jgi.p|Trimin1|149934 vs. uniprot
Match: G4Z4X6_PHYSP (PWI domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z4X6_PHYSP)

HSP 1 Score: 120 bits (301), Expect = 5.150e-32
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 1 
Query:   16 KKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEM 354
            KK+  A  F K  + +VDM+KV   V+++W+T ++TQLLG+EDDIV+  AIN LE   D  RLDPR+LQ+ LTGFLEK    F EELW LL  AQ+ P GIP+A L++KK+EM
Sbjct:   19 KKLLAAMSFPKCFDQRVDMRKVQREVVNQWVTERLTQLLGFEDDIVVSMAINLLEPKVDE-RLDPRQLQVALTGFLEKQAGQFTEELWTLLLSAQSNPTGIPSAILDRKKQEM 130
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BLAST of jgi.p|Trimin1|149934 vs. uniprot
Match: A0A8J5IK03_9STRA (PWI domain-containing protein (Fragment) n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IK03_9STRA)

HSP 1 Score: 119 bits (299), Expect = 5.770e-32
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:   16 KKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEM 354
            KK+     F K  E +VDM+KV   V+++WIT +ITQLLG+EDDIV+  AIN LE   D  +LDP+KLQ+ LTGFLEK    F EELW LL  AQ+ P GIP+A L++KK+EM
Sbjct:   19 KKLLATMTFPKCYEQRVDMRKVQREVINQWITERITQLLGFEDDIVVSMAINLLELKVDE-KLDPKKLQVALTGFLEKQAGAFTEELWQLLLSAQSNPTGIPSAILDKKKQEM 130
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BLAST of jgi.p|Trimin1|149934 vs. uniprot
Match: A0A7S2SU80_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU80_9STRA)

HSP 1 Score: 123 bits (308), Expect = 8.090e-32
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = 1 
Query:    1 DKALMKKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEMLAQQA 369
            +K LMKKM     F+  L  KVD  KVNLPVM++WIT ++TQLLG+ED+IVIG  INFLEA+   A   P++LQL +TGFLEK    F+EELW LLA AQ    GIP  F+E+KKEE+   Q+
Sbjct:   21 NKRLMKKMK----FAAVLGTKVDTGKVNLPVMNRWITERLTQLLGFEDEIVIGLVINFLEANKHPA---PKQLQLDVTGFLEKKAGQFVEELWTLLAAAQENKNGIPPQFIEKKKEELAVAQS 136
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BLAST of jgi.p|Trimin1|149934 vs. uniprot
Match: A0A6V2SV36_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2SV36_EMIHU)

HSP 1 Score: 121 bits (303), Expect = 3.860e-31
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:   13 MKKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEM 354
            MKKM K+  F    E KVDMKKVNL VM  WIT ++++ LG+ED++VIG   + L  + D AR+DP+K+QL LTGFLE  T PFM ELWALL  AQ    GIP  FLE+KKEE+
Sbjct:   21 MKKMIKSTKFPAHFETKVDMKKVNLDVMLPWITEQVSEYLGFEDEVVIGYVESQLRET-DGARVDPKKMQLSLTGFLEANTPPFMRELWALLVSAQENEHGIPTKFLEKKKEEL 133
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BLAST of jgi.p|Trimin1|149934 vs. uniprot
Match: D0NAL8_PHYIT (Serine/arginine repetitive matrix protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NAL8_PHYIT)

HSP 1 Score: 119 bits (299), Expect = 5.250e-31
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:   16 KKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDIVIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQACPGGIPAAFLEQKKEEM 354
            KK+  A  F K  E  VDM+KV   V+++WIT ++TQLLG+EDDIV+  AIN LE   D  +LDP+ LQ+ LTGFLEK    F+EELW LL  AQ+ P GIP+A L++KK+EM
Sbjct:   19 KKLLAAMTFPKCFERSVDMRKVQREVINQWITERVTQLLGFEDDIVVSMAINLLETKVDE-KLDPKNLQVALTGFLEKQAGSFVEELWQLLLSAQSNPTGIPSAILDKKKQEM 130
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149934 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG50_9STRA4.110e-79100.00PWI domain-containing protein (Fragment) n=1 Tax=T... [more]
D8LK57_ECTSI3.220e-3962.28PWI domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KM37_9PHAE1.220e-3861.40PWI domain-containing protein n=1 Tax=Ectocarpus s... [more]
F0YH42_AURAN5.070e-3346.88PWI domain-containing protein (Fragment) n=1 Tax=A... [more]
W2Q1D2_PHYPN1.880e-3257.52PWI domain-containing protein n=6 Tax=Phytophthora... [more]
G4Z4X6_PHYSP5.150e-3254.87PWI domain-containing protein n=1 Tax=Phytophthora... [more]
A0A8J5IK03_9STRA5.770e-3255.75PWI domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A7S2SU80_9STRA8.090e-3256.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V2SV36_EMIHU3.860e-3157.02Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
D0NAL8_PHYIT5.250e-3154.87Serine/arginine repetitive matrix protein, putativ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:513065..514381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149934|gw1.31.161.1
BRITEko00000,ko00001,ko00002,ko03019,ko03041
KEGG ModuleM00430
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG koko:K13171
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001654,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007423,GO:0007530,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0010941,GO:0010942,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0018993,GO:0019219,GO:0019222,GO:0022414,GO:0031123,GO:0031124,GO:0031323,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034399,GO:0034613,GO:0034641,GO:0035145,GO:0042752,GO:0042886,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045292,GO:0046483,GO:0046907,GO:0048024,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048749,GO:0048806,GO:0048856,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070727,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090304,GO:1901360,GO:1902494,GO:1903311,GO:1990904
Preferred nameSRRM1
DescriptionmRNA processing
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2146@1|root,KOG2146@2759|Eukaryota
Evalue5.27e-40
Seed ortholog2880.D8LK57
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPWI domain
Ec32 orthologEc-06_008250.1
TranscriptId150256
TrackFilteredModels1
ProteinId149934
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149934gene_7395Tribonema minus UTEX_B_3156 geneContig_31 513065..514381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149934Trimin1|149934|gw1.31.161.1Tribonema minus UTEX_B_3156 polypeptideContig_31 513065..514381 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7395_2exon_7395_2Tribonema minus UTEX_B_3156 exonContig_31 513065..513370 -
exon_7395_1exon_7395_1Tribonema minus UTEX_B_3156 exonContig_31 514319..514381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7395CDS_7395Tribonema minus UTEX_B_3156 CDSContig_31 514319..514381 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7395 ID=mRNA_7395|Name=jgi.p|Trimin1|149934|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=369bp|location=Sequence derived from alignment at Contig_31:513065..514381- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACAAGGCGCTAATGAAAAAAATGGCGAAGGCTGACATGTTCAGCAAGAC
GCTGGAACTCAAGGTGGACATGAAGAAGGTCAACCTGCCCGTCATGTCCA
AGTGGATCACGGGCAAGATCACGCAGCTCCTCGGCTACGAGGACGACATT
GTAATCGGCACGGCGATCAACTTCCTCGAGGCTTCCGCCGACTCGGCGCG
GCTCGACCCACGCAAGCTGCAGCTCCAGCTCACGGGCTTCCTCGAGAAGG
CGACGCGCCCGTTCATGGAGGAGCTCTGGGCGCTACTCGCGGATGCGCAG
GCGTGCCCCGGCGGCATCCCCGCCGCGTTCCTCGAGCAGAAGAAGGAGGA
GATGCTCGCGCAGCAGGCG
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protein sequence of jgi.p|Trimin1|149934

>Trimin1|149934|gw1.31.161.1 ID=Trimin1|149934|gw1.31.161.1|Name=jgi.p|Trimin1|149934|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=123bp
DKALMKKMAKADMFSKTLELKVDMKKVNLPVMSKWITGKITQLLGYEDDI
VIGTAINFLEASADSARLDPRKLQLQLTGFLEKATRPFMEELWALLADAQ
ACPGGIPAAFLEQKKEEMLAQQA
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mRNA from alignment at Contig_31:513065..514381-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7395 ID=mRNA_7395|Name=jgi.p|Trimin1|149934|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1317bp|location=Sequence derived from alignment at Contig_31:513065..514381- (Tribonema minus UTEX_B_3156 )
GACAAGGCGCTAATGAAAAAAATGGCGAAGGCTGACATGTTCAGCAAGAC
GCTGGAACTCAAGGTGCGTCGGCCTTGCAATCCACGAGCCTTCAGTACTA
CATACTGGGCCGTCCGCTCGCACTGGAGCGCTTGTGATGATCGTACTGCA
TTGGCAGGGTCTGATGGTCACTGCGCTGTCTGCGACAGTTAGAGATTTCG
CAGCTGTTGCAAAGGATCGACAGTGTTTGGCAGTATGCCGACCTTGCCCG
CTACTTCACTTGCTACTTGTATATAAATACATGTCGCTGCAACTGGATTC
TGGTCATGACGTTTTGATACCAGTGCTTGCAGACAGGATGATCATGCTCA
TTCACATACTCATGCATGAGCCATTTCTCCGGGCTCGTTTTGAAAGACTA
CATGCCAGGGCAGACTTTCACATGACTTTGACCCTCCATGGCAGGACGGA
CGTTGAACGATGCATGCGTCACGTCGCATGCGCAGTGCTCATCTGTCATA
CACTCGCAATACCATCACAATCAGAGCTTGCAACACTTTGCAGGACTTGC
CGCAGTGCCTCCGATGCCCTCGCCTCATGCTTCTCACCGACCTAGTGTGC
GTATGTTCCCAATTGTGCTGCCAGTAGCCTGCTGTACGTCAGCCAGCTGC
GCCGCCTCTTTCCAGCGCACCAATTGCTAATACGCAAACCCTATGCTGCA
TGCAAGATACCAGCCACAGCGTCCGCAGCGTTGGCTACACAAATCGCCTT
GCTGGCTTAGGTTGACACCACTTGACGAGCTGACAACAGATGGTGTCGCA
GTGTCATTGCGGTACAGTCGGCGTCGCATAGCACAGCGTCTTGCTTGCCA
CCACGAACAGCGCTGCACACACGCTCCACAATCCCACACGCCACGCCATA
GTCACCTAAGACACCCACGCCTGAGCACTGACAGCCCCCCGCCCGCACCA
CCCCCCTTACCGCACAGCCGCCGCCCCCCCGACCCCCCCCCCCTCCCCCT
CCCCGCCGCAGGTGGACATGAAGAAGGTCAACCTGCCCGTCATGTCCAAG
TGGATCACGGGCAAGATCACGCAGCTCCTCGGCTACGAGGACGACATTGT
AATCGGCACGGCGATCAACTTCCTCGAGGCTTCCGCCGACTCGGCGCGGC
TCGACCCACGCAAGCTGCAGCTCCAGCTCACGGGCTTCCTCGAGAAGGCG
ACGCGCCCGTTCATGGAGGAGCTCTGGGCGCTACTCGCGGATGCGCAGGC
GTGCCCCGGCGGCATCCCCGCCGCGTTCCTCGAGCAGAAGAAGGAGGAGA
TGCTCGCGCAGCAGGCG
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Coding sequence (CDS) from alignment at Contig_31:513065..514381-

>mRNA_7395 ID=mRNA_7395|Name=jgi.p|Trimin1|149934|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=369bp|location=Sequence derived from alignment at Contig_31:513065..514381- (Tribonema minus UTEX_B_3156 )
GACAAGGCGCTAATGAAAAAAATGGCGAAGGCTGACATGTTCAGCAAGAC
GCTGGAACTCAAGGTGGACATGAAGAAGGTCAACCTGCCCGTCATGTCCA
AGTGGATCACGGGCAAGATCACGCAGCTCCTCGGCTACGAGGACGACATT
GTAATCGGCACGGCGATCAACTTCCTCGAGGCTTCCGCCGACTCGGCGCG
GCTCGACCCACGCAAGCTGCAGCTCCAGCTCACGGGCTTCCTCGAGAAGG
CGACGCGCCCGTTCATGGAGGAGCTCTGGGCGCTACTCGCGGATGCGCAG
GCGTGCCCCGGCGGCATCCCCGCCGCGTTCCTCGAGCAGAAGAAGGAGGA
GATGCTCGCGCAGCAGGCG
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