mRNA_7378 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133014
Unique NamemRNA_7378
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A836CEC6_9STRA (Vacuolar protein sorting-associated protein 13A N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEC6_9STRA)

HSP 1 Score: 195 bits (495), Expect = 4.250e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1
Query:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE 297
            MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE
Sbjct:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE 99          
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: D8LP20_ECTSI (Vacuolar protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.560e-29
Identity = 54/98 (55.10%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWD 294
            MFERL++SILT +LGEYVE S+F+ E+++LG+W G LVLE+M +K +++D  +LPL LRHG IGRL+++IP + L  DPI+  ++ V++VV PK+EWD
Sbjct:    1 MFERLVSSILTRLLGEYVEDSTFNTESVKLGIWRGYLVLEDMHIKKTLMDMLELPLALRHGIIGRLQIQIPWSTLNKDPILVDVDRVFLVVEPKFEWD 98          
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A482SWM9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWM9_9ARCH)

HSP 1 Score: 97.4 bits (241), Expect = 2.740e-22
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEW 291
            MFE+ L+ IL  +L ++VE      E +++GVWSG +VLEN+ LK S+ +  ++P+ L +G IGRLEL IP +RLG +P+   L+ +Y++V PKYEW
Sbjct:    1 MFEQGLSFILKKLLRDFVEDGDNLHEKVQVGVWSGLIVLENLVLKNSIFNLLEVPVALSYGYIGRLELHIPWSRLGYEPVTVVLDKIYILVEPKYEW 97          
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A151Z548_9MYCE (Vacuolar protein sorting-associated protein 13 family protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z548_9MYCE)

HSP 1 Score: 95.9 bits (237), Expect = 6.000e-21
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYE--WDE 297
            MFERL+A +LT  LGEY+++   + E +++G+WSGN+ LEN+ LK   L+   LP  ++ G +G+L LKIP   L T+P++  +E++Y+V  PK E  WDE
Sbjct:    1 MFERLVADLLTRYLGEYIKT--LNTENLKIGIWSGNVSLENLELKKRALEKFNLPFTIKEGFLGKLSLKIPWNNLKTEPVIVIVENLYIVASPKSENIWDE 99          
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A4D9D6R4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6R4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.750e-20
Identity = 41/99 (41.41%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE 297
            +  ++L  +LT VLG+Y++   F ++T+R+G+W G++ L N+  K  VLDP  LPL LR GRIG +E++IP  +LG   ++  LE V+V+   KY+W++
Sbjct:    2 VLSQILTPLLTKVLGDYLKPECFQEDTLRVGLWRGHVELFNVFFKEDVLDPLGLPLTLRFGRIGHMEVQIPWNQLGRKAMIVKLEQVHVLAYAKYQWED 100          
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: T1HV00_RHOPR (Uncharacterized protein n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1HV00_RHOPR)

HSP 1 Score: 93.6 bits (231), Expect = 3.750e-20
Identity = 44/96 (45.83%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYE 288
            +FE L+  +L   LGEYVE+   SQ  +++G+W G++VLEN+ LK S LD   LP++  +GR+G+L LKIP  RL TDP++A+++ +Y++VVP  +
Sbjct:    2 VFESLVTDLLNKYLGEYVENLDSSQ--LKVGIWGGDVVLENLILKQSALDELDLPVKTLYGRLGKLTLKIPWKRLYTDPVIASVDTLYLLVVPNQD 95          
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A8J4PSJ7_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PSJ7_9MYCE)

HSP 1 Score: 93.6 bits (231), Expect = 3.890e-20
Identity = 42/101 (41.58%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYE--WDE 297
            MFER +A +LT  LGEY+++   + E +++G+WSGN+ LEN+ LK + L+   LP  ++ G +G+L LKIP   L T+P++  ++++Y+  VPK    WDE
Sbjct:    1 MFERFVADLLTRYLGEYIKT--LNTENLKIGIWSGNVSLENLELKKNALEKFNLPFTIKEGFLGKLSLKIPWNNLKTEPVIVVIDNLYITAVPKSSNLWDE 99          
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: W7U785_9STRA (Vacuolar protein sorting-associated protein vps13 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U785_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.250e-20
Identity = 41/99 (41.41%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE 297
            +  ++L  +LT VLG+Y++   F ++T+R+G+W G++ L N+ LK  VLD   LPL LR GRIG +E++IP  +LG   ++  LE V+V+   KY+W++
Sbjct:    2 VLSQILTPLLTKVLGDYLKPECFQEDTLRVGLWRGHVELFNVYLKEDVLDTLGLPLTLRFGRIGHVEVQIPWNQLGRKAVIVKLEQVHVLAYAKYQWED 100          
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: UPI0009B344CB (vacuolar protein sorting-associated protein 13C-like n=1 Tax=Labrus bergylta TaxID=56723 RepID=UPI0009B344CB)

HSP 1 Score: 84.0 bits (206), Expect = 3.920e-19
Identity = 40/93 (43.01%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVP 279
            +FE L++ +L   +G+YVE+   SQ  +++G+W GN+VLEN+ +K + L    +P +++ G+IG+L LKIP   L  D +VATLE +Y++VVP
Sbjct:    2 VFESLVSDLLNRFIGDYVENLDKSQ--LKIGIWGGNVVLENLKVKENALSEFNVPFKVKAGQIGKLTLKIPWKNLYNDAVVATLEGLYLLVVP 92          
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A069DYI3_9HEMI (Putative vacuolar protein n=2 Tax=Panstrongylus TaxID=65342 RepID=A0A069DYI3_9HEMI)

HSP 1 Score: 89.4 bits (220), Expect = 1.190e-18
Identity = 42/96 (43.75%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYE 288
            +FE L+  +L   LGEYVE+   SQ  +++G+W G++VLE++ LK S LD   LP++   GR+G+L LKIP  RL TDP++A+++ +Y++ VP  +
Sbjct:    2 VFESLVTDLLNKYLGEYVENLDSSQ--LKVGIWGGDVVLEDLVLKQSALDELDLPVKTLFGRLGKLTLKIPWKRLYTDPVIASVDTLYLLAVPNQD 95          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEC6_9STRA4.250e-63100.00Vacuolar protein sorting-associated protein 13A N-... [more]
D8LP20_ECTSI2.560e-2955.10Vacuolar protein sorting-associated protein, putat... [more]
A0A482SWM9_9ARCH2.740e-2246.39Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A151Z548_9MYCE6.000e-2144.55Vacuolar protein sorting-associated protein 13 fam... [more]
A0A4D9D6R4_9STRA2.750e-2041.41Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
T1HV00_RHOPR3.750e-2045.83Uncharacterized protein n=1 Tax=Rhodnius prolixus ... [more]
A0A8J4PSJ7_9MYCE3.890e-2041.58Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
W7U785_9STRA7.250e-2041.41Vacuolar protein sorting-associated protein vps13 ... [more]
UPI0009B344CB3.920e-1943.01vacuolar protein sorting-associated protein 13C-li... [more]
A0A069DYI3_9HEMI1.190e-1843.75Putative vacuolar protein n=2 Tax=Panstrongylus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:314573..315476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133014|gw1.31.20.1
BRITEko00000
KEGG koko:K19525
GOsGO:0000045,GO:0006810,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016043,GO:0016192,GO:0016236,GO:0022607,GO:0030587,GO:0031154,GO:0032502,GO:0044085,GO:0044237,GO:0044248,GO:0045324,GO:0046907,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0061919,GO:0070925,GO:0071840,GO:0090702,GO:0099120,GO:1905037
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Evalue4.2e-30
Seed ortholog2880.D8LP20
Hectar predicted targeting categorysignal peptide
TranscriptId133336
TrackFilteredModels1
ProteinId133014
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133014gene_7378Tribonema minus UTEX_B_3156 geneContig_31 314573..315476 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7378_1exon_7378_1Tribonema minus UTEX_B_3156 exonContig_31 314573..314675 +
exon_7378_2exon_7378_2Tribonema minus UTEX_B_3156 exonContig_31 315283..315476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7378CDS_7378Tribonema minus UTEX_B_3156 CDSContig_31 314573..314675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133014Trimin1|133014|gw1.31.20.1Tribonema minus UTEX_B_3156 polypeptideContig_31 314573..315476 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7378 ID=mRNA_7378|Name=jgi.p|Trimin1|133014|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_31:314573..315476+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGAAAGACTGCTTGCGAGCATACTCACCAGCGTCCTGGGTGAGTA
TGTGGAGAGCAGCAGCTTCAGCCAGGAGACCATACGGCTGGGCGTGTGGA
GCGGCAACCTCGTGCTGGAGAACATGACGCTCAAGGCGAGCGTGCTGGAT
CCCGCGCAGCTGCCGCTGGAGCTGCGGCACGGGCGCATCGGGCGGCTGGA
GTTGAAGATACCGCTGACGCGCCTCGGCACGGACCCGATCGTGGCGACGC
TGGAGCACGTGTACGTGGTGGTGGTGCCCAAGTACGAGTGGGACGAG
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protein sequence of jgi.p|Trimin1|133014

>Trimin1|133014|gw1.31.20.1 ID=Trimin1|133014|gw1.31.20.1|Name=jgi.p|Trimin1|133014|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=99bp
MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLD
PAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE
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mRNA from alignment at Contig_31:314573..315476+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7378 ID=mRNA_7378|Name=jgi.p|Trimin1|133014|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=904bp|location=Sequence derived from alignment at Contig_31:314573..315476+ (Tribonema minus UTEX_B_3156 )
ATGTTTGAAAGACTGCTTGCGAGCATACTCACCAGCGTCCTGGGTGAGTA TGTGGAGAGCAGCAGCTTCAGCCAGGAGACCATACGGCTGGGCGTGTGGA GCGGTGAGCGAACTGCAACATTCCGAAATGCAGCAAGATGTGACCTGCCG TCTAGTGATGTATGTGGATGAGCAAGCAGAGCCGATTGCTGGCCAGACAT TCAGTATCAGTCATGCACGTGAAATGCTGTGACAGCAAGACTGAGTGCTT GCATGGTTACGGGTGGGGTCACTTTTGTGTGATATAAAGCAACATGAAAT CCGAGCTGGTATGCGAACGCACGAGTAACACGGCTTGGGCGTTGCGACAC CTTTGTCCTCAGATGACTTTTTAAAAACCGGGCTTGCAAGTGGCAAGTGG GCAGCTTGCAGAACAGTGGGCGGATGCTGTGAGGATTGGCAACCAACTCT CATGAATCACAGAGCAGCTATCCGCCAGTGTTTCTCGCAGCAGCACTTGG CATACCAGCCATGCATACCTTCTGCTATTCTGACATACATCGGTTGTCAT AGCCATTATCTTATGAAAAACATTCTGATCCTGCACATGTCGGGCCTCGA AAACCTTCATGCCACAACTTCAACTTGAGGCCTCAGTTCGAAAGCTCCCA GCTGATGCAGAACCGCCCTCAACACCCAATCCCACGGCACCGCTGACTAC GCACGCGCAGGCAACCTCGTGCTGGAGAACATGACGCTCAAGGCGAGCGT GCTGGATCCCGCGCAGCTGCCGCTGGAGCTGCGGCACGGGCGCATCGGGC GGCTGGAGTTGAAGATACCGCTGACGCGCCTCGGCACGGACCCGATCGTG GCGACGCTGGAGCACGTGTACGTGGTGGTGGTGCCCAAGTACGAGTGGGA CGAG
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Coding sequence (CDS) from alignment at Contig_31:314573..315476+

>mRNA_7378 ID=mRNA_7378|Name=jgi.p|Trimin1|133014|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=297bp|location=Sequence derived from alignment at Contig_31:314573..315476+ (Tribonema minus UTEX_B_3156 )
ATGTTTGAAAGACTGCTTGCGAGCATACTCACCAGCGTCCTGGGTGAGTA
TGTGGAGAGCAGCAGCTTCAGCCAGGAGACCATACGGCTGGGCGTGTGGA
GCGGCAACCTCGTGCTGGAGAACATGACGCTCAAGGCGAGCGTGCTGGAT
CCCGCGCAGCTGCCGCTGGAGCTGCGGCACGGGCGCATCGGGCGGCTGGA
GTTGAAGATACCGCTGACGCGCCTCGGCACGGACCCGATCGTGGCGACGC
TGGAGCACGTGTACGTGGTGGTGGTGCCCAAGTACGAGTGGGACGAG
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