mRNA_18773 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|56331
Unique NamemRNA_18773
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Match: A0A836CEX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX4_9STRA)

HSP 1 Score: 613 bits (1581), Expect = 7.080e-220
Identity = 318/321 (99.07%), Postives = 320/321 (99.69%), Query Frame = 1
Query:   13 SLLVYGARGVGKTSIVEAALQGTAGVLGMSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSERRSA 975
            SLLVYGARGVGKTS+VEAALQGTAGVLGMSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRA+DLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSE RSA
Sbjct:   48 SLLVYGARGVGKTSLVEAALQGTAGVLGMSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRAMDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSEPRSA 368          
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Match: A0A836CEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG5_9STRA)

HSP 1 Score: 567 bits (1462), Expect = 5.910e-203
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 1
Query:   97 MSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSERRSA 975
            MSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSERRSA
Sbjct:    1 MSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSERRSA 293          
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Match: A0A835YHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU7_9STRA)

HSP 1 Score: 457 bits (1176), Expect = 5.690e-156
Identity = 248/318 (77.99%), Postives = 268/318 (84.28%), Query Frame = 1
Query:   13 SLLVYGARGVGKTSIVEAALQGTAGVLGMSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDD-----YAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAA 951
            SLLVYGARG GKTSIVEAALQG AGVL MSYNGDGTDLEQRLEQLLLK AGLP HGPKADLGDRLRAILTFYQ V+ RRPVVVI I+ERT PATLSKLLLAA+QLGFQEKLATFIFVVSA RSALGL IG+ Q++V GYRAPDF+EDEALAYLAKHLP  PGMAEF VQQIGTRA+DLVELCS CRGVE E ECR RV A R   I DARFALRGFV IAKKN+AF ++A +AFF +LLAA   DAALA  CVLDDD     +AA AFGFE+P LLL ALA+YHAF +DPF HTISMQSH M+ AI++YLQ  A SAA
Sbjct:  107 SLLVYGARGGGKTSIVEAALQGIAGVLAMSYNGDGTDLEQRLEQLLLKPAGLPGHGPKADLGDRLRAILTFYQKVYDRRPVVVIHIDERTAPATLSKLLLAAEQLGFQEKLATFIFVVSAYRSALGLPIGLSQTQVLGYRAPDFTEDEALAYLAKHLPSCPGMAEFAVQQIGTRAMDLVELCSACRGVESETECRARVAALRAMRIGDARFALRGFVGIAKKNKAFEEKAGLAFFEKLLAAHGGDAALARACVLDDDVLTDYHAAVAFGFEKPALLLSALAEYHAFVVDPFYHTISMQSHCMRIAIQEYLQAVASSAA 424          
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Match: A0A836CL53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL53_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 1.640e-133
Identity = 215/312 (68.91%), Postives = 244/312 (78.21%), Query Frame = 1
Query:   40 VGKTSIVEAALQGTAGVLGMSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSERRSA 975
            V +    E    GTAGVLGMSYNGDGTDLEQRLE+L+L  +GL +      +G  LRAILTFYQ V+ RRPV VIDIN +  PA LS LLLAA+QLGFQEKLATFIFVVSASRSALGLT+GI QSRVRGYRAPDF+  EA  YLAKHL PFP + EFVVQQ+GTRA+DLVE+CS  RGVE E ECRERVEAYR A I DAR AL GFVAIA++N AFSK+AS+AFF++LLA         GT VL D  A  AFGF++P+LLL ALA++HAFA+DPFDHTISMQSHFMQ A++QYLQ EA  AAGTSE  SA
Sbjct:   25 VARDCFAEFTCMGTAGVLGMSYNGDGTDLEQRLEELVLDCSGLSDDAATGRIGYCLRAILTFYQRVYNRRPVFVIDINSKMEPAALSDLLLAARQLGFQEKLATFIFVVSASRSALGLTVGITQSRVRGYRAPDFNPAEAHNYLAKHLSPFPELTEFVVQQVGTRAMDLVEVCSGSRGVESELECRERVEAYRTARIDDARDALDGFVAIAEENAAFSKDASLAFFKKLLA---------GTSVLKDKDARVAFGFKKPDLLLAALAQWHAFAVDPFDHTISMQSHFMQIAVDQYLQAEALGAAGTSEPSSA 327          
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Match: A0A835Z1Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z3_9STRA)

HSP 1 Score: 375 bits (963), Expect = 2.170e-124
Identity = 208/304 (68.42%), Postives = 237/304 (77.96%), Query Frame = 1
Query:   52 SIVEAALQGTAGVLGMSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSE 963
            SIV AALQ TAGVL MSY GDG DL  RLE  ++KLA LP   PKAD GDRLRAI T Y+   KRRP+V+IDINE+  PATLSKLL+AAKQLGF EKLATFIFVVSA  SALGLT+   +SRV GY APDF+EDEALAYLAKHL PFPGMAEFVVQQ+GTRA+ LV LC +C+G + E E R RVEAYR A I DA   L GFVAIA++N AFSKEAS+AFF++LL          GT VL D +A  AFGF++P+LLL ALA++HAFA+ PF+HTISMQSHFM  AI+QYLQ EA SAAGTSE
Sbjct:  179 SIVAAALQNTAGVLYMSYQGDGLDLAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYRKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGF-EKLATFIFVVSALWSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETERRGRVEAYRTARIDDAGLVLLGFVAIAEENAAFSKEASLAFFKKLLD---------GTPVLKDRHAMVAFGFKKPDLLLAALAQWHAFAVVPFEHTISMQSHFMHIAIDQYLQAEASSAAGTSE 472          
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Match: A0A836CIF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF9_9STRA)

HSP 1 Score: 368 bits (945), Expect = 1.070e-123
Identity = 199/282 (70.57%), Postives = 224/282 (79.43%), Query Frame = 1
Query:  118 TDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSE 963
            T L  RLE  ++KLA LP   PKAD GDRLRAI T Y+   KRRP+V+IDINE+  PATLSKLL+AAKQLGF+EKLATFIFVVSASRSALGLT+   +SRV GY APDF+EDEALAYLAKHL PFPGMAEFVVQQ+GTRA+ LV LC +C+G + E ECR RVEAYREA I DAR  L GF+AIAKKN AFSK+ASVAFF++LL          GT VL D  A  AFGF+EP+LLL ALAK+HAFA+DPF HTISMQSHFMQ AI+QYLQ EA  AAGTSE
Sbjct:   39 TALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLN---------GTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSE 311          
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Match: A0A836CJC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC5_9STRA)

HSP 1 Score: 341 bits (875), Expect = 1.280e-113
Identity = 187/301 (62.13%), Postives = 221/301 (73.42%), Query Frame = 1
Query:   55 IVEAALQGTAGVLGMSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGT 957
            +V AALQ T+GVL + Y G+G +LE RLE  +L LA LP   P    G R RAIL  Y+ VHK RP+VVIDINE   PATLSKLLL AKQLGF+E LAT IFVV+A  SALGL + + +SRVRGYRAPDF+EDEAL Y AKHL  FP M EFVV+QIGTRA+ LV LC +C+G E E ECR R+ AYR A I DA   L GFVAIA++NE +SK+AS+AFF++L           GT VLDD  A DAFGF++P+LL  ALAK+ AF +DPFDHTISMQSHFM+TAI++ LQ EA  AAGT
Sbjct:    1 MVAAALQDTSGVLPVLYEGNGLNLEVRLELAMLALAELPIINPTVRPGSRCRAILAIYKKVHKCRPIVVIDINEAMAPATLSKLLLEAKQLGFEEYLATLIFVVTAPWSALGLPVSLEESRVRGYRAPDFTEDEALTYAAKHLSAFPDMTEFVVKQIGTRAMHLVSLCRKCQGAESETECRRRLAAYRTARIDDAALVLLGFVAIAQENETYSKDASLAFFKKLKD---------GTPVLDDGDAWDAFGFDDPDLLFAALAKWPAFPVDPFDHTISMQSHFMKTAIDEDLQAEAVGAAGT 292          
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Match: A0A835Z0B3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0B3_9STRA)

HSP 1 Score: 286 bits (731), Expect = 7.900e-93
Identity = 156/230 (67.83%), Postives = 177/230 (76.96%), Query Frame = 1
Query:  151 LKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALA 840
            +KLA LP   PKAD GDRLRAI T Y+   KRRP+V+IDINE+  PATLSKLL+AAKQLGF+EKLATFIFVVSASRSAL LT+   +SRV GY AP F+EDEALAYLAKHL PFPGMAEFVVQQ+GTRA+ LV LC +C+G + E ECR R EAYR A I DA   L GFVA+AKKN AFSKEAS+AFF++LL          GT VL D  A  AFGF+EP+LLL ALA
Sbjct:    1 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALRLTVTTEESRVDGYSAPGFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRAEAYRTARIDDAGLVLLGFVAMAKKNAAFSKEASLAFFKKLLD---------GTPVLKDRDAMVAFGFDEPDLLLAALA 221          
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Match: A0A835Z4Z8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Z8_9STRA)

HSP 1 Score: 242 bits (618), Expect = 1.690e-75
Identity = 123/164 (75.00%), Postives = 138/164 (84.15%), Query Frame = 1
Query:  151 LKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDAR 642
            +KLA LP   PKAD GDRLRAI T Y+   KRRP+V+IDINE+  PATLSKLL+AAKQLGF+EKLATFIFVVSASRSALGLT+   +SRV GY APDF+EDEALAYLAKHL PFPGMAEFVVQQ+GTRA+ LV LC +C+GV+ E ECR RVEAYR A IKDAR
Sbjct:    1 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGVKSETECRGRVEAYRAARIKDAR 164          
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Match: A0A836CPB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPB3_9STRA)

HSP 1 Score: 235 bits (600), Expect = 5.410e-71
Identity = 137/292 (46.92%), Postives = 177/292 (60.62%), Query Frame = 1
Query:   67 ALQGTAGVLGMSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADL--GDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPE 936
            A++G  GV+   Y    TD++  L+Q+L ++         A     DR RA L  Y + ++RR V+VI+IN    P TL ++LLAAKQLGF E LATF+ VVSASRSALG+ IG+ + RVR Y APDF+E EA  Y+ + LP FPG+A  +   +G  A+ LVE+   CR  +   EC E   AYRE  ++DA+  LR F+AIAKKN  FSK+ S  F  QL A         G   L  + A  AFGF E + LL ALAK+HAF IDPF   +SMQSHFM  A+ QYLQ +
Sbjct:   87 AMKGMRGVITAYYTEGITDIQGWLDQVLTRVTSKRTTAQPAGTMTADRARAALATYLVKYRRRAVIVIEINSEVTPHTLCEILLAAKQLGFDEMLATFVIVVSASRSALGVPIGLSELRVRRYSAPDFTEAEAHQYIQQRLPKFPGIAANITSLVGEHAMHLVEVSEACREAKSAEECVEHAHAYREVGVRDAQDTLRNFIAIAKKNGTFSKDDSRLFLEQLRA---------GKPALFKEDACVAFGFTELDTLLAALAKWHAFVIDPFKKQVSMQSHFMWIAMGQYLQEQ 369          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|56331 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A836CEX4_9STRA7.080e-22099.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEG5_9STRA5.910e-203100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YHU7_9STRA5.690e-15677.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CL53_9STRA1.640e-13368.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1Z3_9STRA2.170e-12468.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIF9_9STRA1.070e-12370.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJC5_9STRA1.280e-11362.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0B3_9STRA7.900e-9367.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4Z8_9STRA1.690e-7575.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CPB3_9STRA5.410e-7146.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_301contigContig_301:20878..22498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|56331|CE56330_103
Hectar predicted targeting categoryother localisation
TranscriptId56653
TrackFilteredModels1
ProteinId56331
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|56331gene_18773Tribonema minus UTEX_B_3156 geneContig_301 20878..22498 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18773_2exon_18773_2Tribonema minus UTEX_B_3156 exonContig_301 20878..21889 -
exon_18773_1exon_18773_1Tribonema minus UTEX_B_3156 exonContig_301 22424..22498 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18773UTR3_18773Tribonema minus UTEX_B_3156 three_prime_UTRContig_301 20878..20986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18773CDS_18773Tribonema minus UTEX_B_3156 CDSContig_301 20987..21868 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_18773UTR5_18773Tribonema minus UTEX_B_3156 five_prime_UTRContig_301 22424..22498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|56331Trimin1|56331|CE56330_103Tribonema minus UTEX_B_3156 polypeptideContig_301 20987..21868 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18773 ID=mRNA_18773|Name=jgi.p|Trimin1|56331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1087bp|location=Sequence derived from alignment at Contig_301:20878..22498- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGGACTGATAATCACTGCTGGTGTACGGTGCACGGGGTGTCGGCAAGAC
AAGTATCGTCGAGGCAGCCTTGCAGGGTACTGCTGGCGTGCTGGGCATGT
CATACAATGGCGATGGCACGGACTTGGAGCAGCGCCTGGAACAGCTGCTG
CTCAAGCTCGCTGGCCTTCCAGAGCATGGACCTAAGGCGGACCTCGGTGA
TCGTCTGCGAGCCATCCTGACCTTCTACCAGATAGTGCACAAGCGCCGAC
CCGTCGTCGTTATCGACATCAACGAGAGGACGGGGCCGGCGACTCTCAGC
AAGCTGCTGCTGGCGGCCAAACAGCTGGGGTTCCAGGAGAAGCTGGCCAC
ATTCATTTTCGTTGTGTCAGCGTCCAGGAGTGCCCTGGGCCTGACCATTG
GCATCAGGCAGTCCCGAGTGCGGGGGTACCGAGCACCTGACTTCAGCGAA
GATGAGGCGCTTGCATACCTCGCCAAGCACCTGCCCCCCTTCCCTGGTAT
GGCAGAGTTTGTGGTGCAGCAGATTGGGACGCGTGCCCTGGACCTGGTGG
AACTGTGCAGCGAGTGCCGCGGCGTGGAGTTAGAGCCAGAGTGCCGGGAG
CGGGTGGAGGCATACAGGGAGGCATGCATCAAGGATGCGCGATTTGCGCT
CCGCGGCTTCGTAGCCATTGCCAAGAAAAATGAGGCTTTCAGCAAGGAGG
CAAGCGTTGCATTCTTCCGGCAGCTGCTTGCAGCTGATAGCGACGATGCA
GCGCTTGCAGGTACTTGTGTGCTGGACGACGACTATGCAGCGGATGCATT
TGGGTTTGAAGAGCCTGAGCTGTTGCTCTTAGCACTTGCCAAGTACCACG
CGTTTGCGATTGATCCGTTTGATCACACGATCAGCATGCAGTCGCATTTC
ATGCAGACAGCAATCGAACAGTACCTGCAACCCGAGGCCCCCAGTGCGGC
TGGCACAAGTGAGCGCAGGTCTGCGTAGGCATCTTCAAAGGCGGCGAGCT
CTGTGCTGTCCTGTCAATAGGTTACTGTATATGATTTCACAGAAGCGCAC
ACGCGCGCACACACAATTGAACATATTGCGCCTTCAA
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protein sequence of jgi.p|Trimin1|56331

>Trimin1|56331|CE56330_103 ID=Trimin1|56331|CE56330_103|Name=jgi.p|Trimin1|56331|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp
MSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKR
RPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLT
IGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDL
VELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSK
EASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKY
HAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSERRSA*
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mRNA from alignment at Contig_301:20878..22498-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18773 ID=mRNA_18773|Name=jgi.p|Trimin1|56331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1621bp|location=Sequence derived from alignment at Contig_301:20878..22498- (Tribonema minus UTEX_B_3156 )
GAGGACTGATAATCACTGCTGGTGTACGGTGCACGGGGTGTCGGCAAGAC AAGTATCGTCGAGGCAGCCTTGCAGGTAAGACTTCAAAGTGTTTTTATAT CTGCATGAAAACTGCGCACTTGGCTAGTGTGATGACGTGCATTCCCTGTG TTGACACAGCCATTTTGAGGTCGGGTGTGCACCTGGGTAGCAAGTTGAAT CAGCACTGAGGAATATTCTGGCTGACCACATGACAGAGAACTGTAATAAT CATGTAATGTTGCTGCTGTGAAAGACATGTGCGCAGTACGATGTGGCGTG GCGCATGTGCTGCTGAGGATGTGCAGTGCACACATGCAGGTGCTCCAATC AGACCGTACTGCAGGACATGTTGGCAAACCATTGCGGGCTATGCGGTGCC CAGTTGCAAGGCATGGCTTTTAGAGCAGTGTACGTTATTGACATGAAGCT GCACGACGACAGTTCAGGCCTTACTGCAGGGCATGATCACAAACCATCGT GTGCTTTTTGCTATTCAGTTGCAGGCCATAACTCTAGAGCAGCGTACTTC ACGGATCTTGTCTGCATCAATAACTATACTCATCCTTTCGACTTTGCTCG CTTTCACAGGGTACTGCTGGCGTGCTGGGCATGTCATACAATGGCGATGG CACGGACTTGGAGCAGCGCCTGGAACAGCTGCTGCTCAAGCTCGCTGGCC TTCCAGAGCATGGACCTAAGGCGGACCTCGGTGATCGTCTGCGAGCCATC CTGACCTTCTACCAGATAGTGCACAAGCGCCGACCCGTCGTCGTTATCGA CATCAACGAGAGGACGGGGCCGGCGACTCTCAGCAAGCTGCTGCTGGCGG CCAAACAGCTGGGGTTCCAGGAGAAGCTGGCCACATTCATTTTCGTTGTG TCAGCGTCCAGGAGTGCCCTGGGCCTGACCATTGGCATCAGGCAGTCCCG AGTGCGGGGGTACCGAGCACCTGACTTCAGCGAAGATGAGGCGCTTGCAT ACCTCGCCAAGCACCTGCCCCCCTTCCCTGGTATGGCAGAGTTTGTGGTG CAGCAGATTGGGACGCGTGCCCTGGACCTGGTGGAACTGTGCAGCGAGTG CCGCGGCGTGGAGTTAGAGCCAGAGTGCCGGGAGCGGGTGGAGGCATACA GGGAGGCATGCATCAAGGATGCGCGATTTGCGCTCCGCGGCTTCGTAGCC ATTGCCAAGAAAAATGAGGCTTTCAGCAAGGAGGCAAGCGTTGCATTCTT CCGGCAGCTGCTTGCAGCTGATAGCGACGATGCAGCGCTTGCAGGTACTT GTGTGCTGGACGACGACTATGCAGCGGATGCATTTGGGTTTGAAGAGCCT GAGCTGTTGCTCTTAGCACTTGCCAAGTACCACGCGTTTGCGATTGATCC GTTTGATCACACGATCAGCATGCAGTCGCATTTCATGCAGACAGCAATCG AACAGTACCTGCAACCCGAGGCCCCCAGTGCGGCTGGCACAAGTGAGCGC AGGTCTGCGTAGGCATCTTCAAAGGCGGCGAGCTCTGTGCTGTCCTGTCA ATAGGTTACTGTATATGATTTCACAGAAGCGCACACGCGCGCACACACAA TTGAACATATTGCGCCTTCAA
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Coding sequence (CDS) from alignment at Contig_301:20878..22498-

>mRNA_18773 ID=mRNA_18773|Name=jgi.p|Trimin1|56331|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_301:20878..22498- (Tribonema minus UTEX_B_3156 )
ATGTCATACAATGGCGATGGCACGGACTTGGAGCAGCGCCTGGAACAGCT
GCTGCTCAAGCTCGCTGGCCTTCCAGAGCATGGACCTAAGGCGGACCTCG
GTGATCGTCTGCGAGCCATCCTGACCTTCTACCAGATAGTGCACAAGCGC
CGACCCGTCGTCGTTATCGACATCAACGAGAGGACGGGGCCGGCGACTCT
CAGCAAGCTGCTGCTGGCGGCCAAACAGCTGGGGTTCCAGGAGAAGCTGG
CCACATTCATTTTCGTTGTGTCAGCGTCCAGGAGTGCCCTGGGCCTGACC
ATTGGCATCAGGCAGTCCCGAGTGCGGGGGTACCGAGCACCTGACTTCAG
CGAAGATGAGGCGCTTGCATACCTCGCCAAGCACCTGCCCCCCTTCCCTG
GTATGGCAGAGTTTGTGGTGCAGCAGATTGGGACGCGTGCCCTGGACCTG
GTGGAACTGTGCAGCGAGTGCCGCGGCGTGGAGTTAGAGCCAGAGTGCCG
GGAGCGGGTGGAGGCATACAGGGAGGCATGCATCAAGGATGCGCGATTTG
CGCTCCGCGGCTTCGTAGCCATTGCCAAGAAAAATGAGGCTTTCAGCAAG
GAGGCAAGCGTTGCATTCTTCCGGCAGCTGCTTGCAGCTGATAGCGACGA
TGCAGCGCTTGCAGGTACTTGTGTGCTGGACGACGACTATGCAGCGGATG
CATTTGGGTTTGAAGAGCCTGAGCTGTTGCTCTTAGCACTTGCCAAGTAC
CACGCGTTTGCGATTGATCCGTTTGATCACACGATCAGCATGCAGTCGCA
TTTCATGCAGACAGCAATCGAACAGTACCTGCAACCCGAGGCCCCCAGTG
CGGCTGGCACAAGTGAGCGCAGGTCTGCGTAG
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