Trimin1|348734|estExt_Genemark1.C_Ctg_300084 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348734
Unique Name	Trimin1\|348734\|estExt_Genemark1.C_Ctg_300084
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	808

Homology

[Close]

BLAST of jgi.p|Trimin1|348734 vs. uniprot
Match: A0A835Z0E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E5_9STRA)

HSP 1 Score: 1375 bits (3559), Expect = 0.000e+0
Identity = 807/807 (100.00%), Postives = 807/807 (100.00%), Query Frame = 0

Query:    1 MEEDVGEDPEMPFGGGGLAGTFFPALSLDTLVFVPRSVLLDGQRKVLPLYGEVQRHLVDYNKVCAKHPNAKLLYLSYIPAERVPDKYGQRRSILGSEERQLWEELFGAVAAFLQDHTEFAFVWAPRCCLGGAKATLPGGANMLEHCNPLALLVRDAACGTMLXXXXXXXXXXXXXXXXXXXXXXXACDTVLLVPPQRHPGDCASPTMHDHTDLRCCTDYPWVALETIYLHLAGAQGHVLFRYEEQRTYSELVGSDRQDVGKALCGGINETIDAYALCYEDPVRKNWEHANLQNTLMDCVRKDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTWHALLEGRWNACADKAERLAVLNLLHFGVAFFERRIAPPRAPGYAEATLLESLDAIPEGEGGGLALDLWMXXXXXXXXXXXXXXDLSPLDLCAVLEAARAHQSTSNAGGAAAGGKPTGPICRLTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEGGVQLARALMENTSLLELDIRENMVGSSMGAIADSIKGHRCLETLHVERAAVAADGAVTQHLLLLXXXXXXXXXXXXXLQDNGIGDEGACAVAEALNRSLSLKYVFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICKAMLRDAWEERQLPENRERRAAAAAAALAEPVHRTSIFSSAPGTRSFGKMMGSESVTAATGAXXXXXXXXSRSASVSREGGPPSGLNVSPLSVLRARRSSANSPGGARSIISRLGAASLHTPPPRTXXXPQRSTSHSPRPGLVVDE 807
            MEEDVGEDPEMPFGGGGLAGTFFPALSLDTLVFVPRSVLLDGQRKVLPLYGEVQRHLVDYNKVCAKHPNAKLLYLSYIPAERVPDKYGQRRSILGSEERQLWEELFGAVAAFLQDHTEFAFVWAPRCCLGGAKATLPGGANMLEHCNPLALLVRDAACGTMLXXXXXXXXXXXXXXXXXXXXXXXACDTVLLVPPQRHPGDCASPTMHDHTDLRCCTDYPWVALETIYLHLAGAQGHVLFRYEEQRTYSELVGSDRQDVGKALCGGINETIDAYALCYEDPVRKNWEHANLQNTLMDCVRKDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTWHALLEGRWNACADKAERLAVLNLLHFGVAFFERRIAPPRAPGYAEATLLESLDAIPEGEGGGLALDLWMXXXXXXXXXXXXXXDLSPLDLCAVLEAARAHQSTSNAGGAAAGGKPTGPICRLTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEGGVQLARALMENTSLLELDIRENMVGSSMGAIADSIKGHRCLETLHVERAAVAADGAVTQHLLLLXXXXXXXXXXXXXLQDNGIGDEGACAVAEALNRSLSLKYVFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICKAMLRDAWEERQLPENRERRAAAAAAALAEPVHRTSIFSSAPGTRSFGKMMGSESVTAATGAXXXXXXXXSRSASVSREGGPPSGLNVSPLSVLRARRSSANSPGGARSIISRLGAASLHTPPPRTXXXPQRSTSHSPRPGLVVDE
Sbjct:    1 MEEDVGEDPEMPFGGGGLAGTFFPALSLDTLVFVPRSVLLDGQRKVLPLYGEVQRHLVDYNKVCAKHPNAKLLYLSYIPAERVPDKYGQRRSILGSEERQLWEELFGAVAAFLQDHTEFAFVWAPRCCLGGAKATLPGGANMLEHCNPLALLVRDAACGTMLXXXXXXXXXXXXXXXXXXXXXXXACDTVLLVPPQRHPGDCASPTMHDHTDLRCCTDYPWVALETIYLHLAGAQGHVLFRYEEQRTYSELVGSDRQDVGKALCGGINETIDAYALCYEDPVRKNWEHANLQNTLMDCVRKDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTWHALLEGRWNACADKAERLAVLNLLHFGVAFFERRIAPPRAPGYAEATLLESLDAIPEGEGGGLALDLWMXXXXXXXXXXXXXXDLSPLDLCAVLEAARAHQSTSNAGGAAAGGKPTGPICRLTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEGGVQLARALMENTSLLELDIRENMVGSSMGAIADSIKGHRCLETLHVERAAVAADGAVTQHLLLLXXXXXXXXXXXXXLQDNGIGDEGACAVAEALNRSLSLKYVFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICKAMLRDAWEERQLPENRERRAAAAAAALAEPVHRTSIFSSAPGTRSFGKMMGSESVTAATGAXXXXXXXXSRSASVSREGGPPSGLNVSPLSVLRARRSSANSPGGARSIISRLGAASLHTPPPRTXXXPQRSTSHSPRPGLVVDE 807

[Close]

BLAST of jgi.p|Trimin1|348734 vs. uniprot
Match: D7G5T8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5T8_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.500e-24
Identity = 97/256 (37.89%), Postives = 120/256 (46.88%), Query Frame = 0

Query:  266 GINETIDAYALCYEDPVRKNWEHANLQNTLMDCVRKDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTWHALLEGRWNACADKAERLAVLNLLHFGVAFFERRIAPPRAPGYAEATLLESLDAIPEGEGGGLALDLWMXXXXXXXXXXXXXXDLSPLDLCAVLEAARAHQSTSNAGGAAAGGKPTGPICRLTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEGGVQ 521
            GIN T          P  +NW        ++   R+DV     A GAL+QA+CS+SV+  QA EF   W  L       CA   +RLAVLNLL F V+  +    P R   +    L ESL  +  G      LDLWM              DLSP D   +L A            +AAG K    +  LTVGSSH+ GAGVG FL  + +L  LE+EWE VRD+  I + L     L  LNLTHN IG  G +Q
Sbjct:  372 GINGT--------HSPPERNWRGVLQPCFVLRKTRQDVEKYSDAQGALKQAMCSLSVSIDQAEEFFLVWKYLAS--LGPCASN-DRLAVLNLLVFAVSVADGYCCPRRPSDFVGRVLAESL--VTPGH-----LDLWMK-------------DLSPDDSRNILRAV-----------SAAGKK----LSILTVGSSHTAGAGVGSFLRGHPSLRELELEWEGVRDLSSIAQALGEHKSLTRLNLTHNEIGPRGALQ 581

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348734 vs. uniprot

BLAST of jgi.p|Trimin1|348734 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z0E5_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7G5T8_ECTSI	3.500e-24	37.89	Hypothetical leucine rich repeat protein n=2 Tax=E...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 501..528 e-value: 0.1 score: 21.7 coord: 588..615 e-value: 11.0 score: 9.7 coord: 616..643 e-value: 160.0 score: 1.5 coord: 529..555 e-value: 55.0 score: 4.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 782..796
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 734..753
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 758..807
None	No IPR available	PANTHER	PTHR24106	NACHT, LRR AND CARD DOMAINS-CONTAINING	coord: 463..541
None	No IPR available	PANTHER	PTHR24106:SF275	NLR FAMILY CARD DOMAIN-CONTAINING PROTEIN 3	coord: 521..672
None	No IPR available	PANTHER	PTHR24106	NACHT, LRR AND CARD DOMAINS-CONTAINING	coord: 521..672
None	No IPR available	PANTHER	PTHR24106:SF275	NLR FAMILY CARD DOMAIN-CONTAINING PROTEIN 3	coord: 463..541
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 464..666
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 411..579 e-value: 8.6E-17 score: 62.8
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 593..698 e-value: 1.7E-12 score: 49.3
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 504..523 e-value: 0.033 score: 14.3

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_30	contig	Contig_30:580003..596018 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348734	mRNA_5388	Tribonema minus UTEX_B_3156	mRNA	Contig_30 580003..596368 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348734|estExt_Genemark1.C_Ctg_300084 ID=Trimin1|348734|estExt_Genemark1.C_Ctg_300084|Name=jgi.p|Trimin1|348734|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=808bp
MEEDVGEDPEMPFGGGGLAGTFFPALSLDTLVFVPRSVLLDGQRKVLPLY
GEVQRHLVDYNKVCAKHPNAKLLYLSYIPAERVPDKYGQRRSILGSEERQ
LWEELFGAVAAFLQDHTEFAFVWAPRCCLGGAKATLPGGANMLEHCNPLA
LLVRDAACGTMLLLLTPPLLLPLLLLLPLLLPPPQACDTVLLVPPQRHPG
DCASPTMHDHTDLRCCTDYPWVALETIYLHLAGAQGHVLFRYEEQRTYSE
LVGSDRQDVGKALCGGINETIDAYALCYEDPVRKNWEHANLQNTLMDCVR
KDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTWHALLEGRWNACADKAE
RLAVLNLLHFGVAFFERRIAPPRAPGYAEATLLESLDAIPEGEGGGLALD
LWMKGEGGGLALDLWMKDLSPLDLCAVLEAARAHQSTSNAGGAAAGGKPT
GPICRLTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRH
APGLLTLNLTHNSIGAEGGVQLARALMENTSLLELDIRENMVGSSMGAIA
DSIKGHRCLETLHVERAAVAADGAVTQHLLLLVPPLLLLLLPPLLLQDNG
IGDEGACAVAEALNRSLSLKYVFLDGNNIGDPGGRILKTAVDCSPALEAL
SLQRNMMGDICKAMLRDAWEERQLPENRERRAAAAAAALAEPVHRTSIFS
SAPGTRSFGKMMGSESVTAATGAAAAAAARRSRSASVSREGGPPSGLNVS
PLSVLRARRSSANSPGGARSIISRLGAASLHTPPPRTPPPPQRSTSHSPR
PGLVVDE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt