Trimin1|348726|estExt_Genemark1.C_Ctg_300073 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348726
Unique Name	Trimin1\|348726\|estExt_Genemark1.C_Ctg_300073
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	227

Homology

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BLAST of jgi.p|Trimin1|348726 vs. uniprot
Match: A0A835YZ56_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ56_9STRA)

HSP 1 Score: 435 bits (1119), Expect = 4.350e-154
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0

Query:    1 MTVAADLFGGEDAALGMTHPLDALDREACRRYRELFAASDVSYKDVQDMLQPADRHGFSGHDKLAWMGVSNGDHRAAILLRMAALAQWRAAHGDAERCPAAQPLRDGAATPAASHAEAADAASGGAVLSSXXXXXXXGDLAIGGQHLGHAAADWSVDDVVAWLHQHGLSAQEELFRQKGVTGAQLADLATADLKYGFGVVDKLHWLGVRDDLEPLVAALQEEFNDR 226
            MTVAADLFGGEDAALGMTHPLDALDREACRRYRELFAASDVSYKDVQDMLQPADRHGFSGHDKLAWMGVSNGDHRAAILLRMAALAQWRAAHGDAERCPAAQPLRDGAATPAASHAEAADAASGGAVLSSXXXXXXXGDLAIGGQHLGHAAADWSVDDVVAWLHQHGLSAQEELFRQKGVTGAQLADLATADLKYGFGVVDKLHWLGVRDDLEPLVAALQEEFNDR
Sbjct:    1 MTVAADLFGGEDAALGMTHPLDALDREACRRYRELFAASDVSYKDVQDMLQPADRHGFSGHDKLAWMGVSNGDHRAAILLRMAALAQWRAAHGDAERCPAAQPLRDGAATPAASHAEAADAASGGAVLSSXXXXXXXGDLAIGGQHLGHAAADWSVDDVVAWLHQHGLSAQEELFRQKGVTGAQLADLATADLKYGFGVVDKLHWLGVRDDLEPLVAALQEEFNDR 226

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BLAST of jgi.p|Trimin1|348726 vs. uniprot
Match: F2URC6_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2URC6_SALR5)

HSP 1 Score: 54.3 bits (129), Expect = 6.260e-5
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0

Query:  149 HAAADWSVDDVVAWLHQHGLSAQEELFRQKGVTGAQLADLATAD 192
            HA ADWS ++VVAWLHQ+G S  E  FR   + G QLAD ATAD
Sbjct:   14 HALADWSCEEVVAWLHQNGFSDFESSFRNFKIAGHQLAD-ATAD 56

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348726 vs. uniprot

BLAST of jgi.p|Trimin1|348726 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YZ56_9STRA	4.350e-154	100.00	SAM domain-containing protein n=1 Tax=Tribonema mi...	[more]
F2URC6_SALR5	6.260e-5	61.36	Uncharacterized protein n=1 Tax=Salpingoeca rosett...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001660	Sterile alpha motif domain	PFAM	PF00536	SAM_1	coord: 153..204 e-value: 9.6E-7 score: 29.2
IPR001660	Sterile alpha motif domain	PROSITE	PS50105	SAM_DOMAIN	coord: 154..218 score: 12.137701
IPR013761	Sterile alpha motif/pointed domain superfamily	GENE3D	1.10.150.50		coord: 145..217 e-value: 5.2E-11 score: 44.9
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	47769	SAM/Pointed domain	coord: 152..219

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_30	contig	Contig_30:489703..491007 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348726	mRNA_5375	Tribonema minus UTEX_B_3156	mRNA	Contig_30 489703..491014 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348726|estExt_Genemark1.C_Ctg_300073 ID=Trimin1|348726|estExt_Genemark1.C_Ctg_300073|Name=jgi.p|Trimin1|348726|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=227bp
MTVAADLFGGEDAALGMTHPLDALDREACRRYRELFAASDVSYKDVQDML
QPADRHGFSGHDKLAWMGVSNGDHRAAILLRMAALAQWRAAHGDAERCPA
AQPLRDGAATPAASHAEAADAASGGAVLSSSADAAGGGDLAIGGQHLGHA
AADWSVDDVVAWLHQHGLSAQEELFRQKGVTGAQLADLATADLKYGFGVV
DKLHWLGVRDDLEPLVAALQEEFNDR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001660	SAM
IPR013761	SAM/pointed_sf