Trimin1|348679|estExt_Genemark1.C_Ctg_300008 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348679
Unique NameTrimin1|348679|estExt_Genemark1.C_Ctg_300008
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length222
Homology
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A835Z091_9STRA (Fucoxanthin chlorophyll a/c binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z091_9STRA)

HSP 1 Score: 429 bits (1102), Expect = 1.160e-151
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MMQAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFSS 221
            MMQAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFSS
Sbjct:    1 MMQAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFSS 221          
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A836CA40_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA40_9STRA)

HSP 1 Score: 231 bits (589), Expect = 3.800e-73
Identity = 123/228 (53.95%), Postives = 164/228 (71.93%), Query Frame = 0
Query:    2 MQAILL--LSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSF---KEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNG----FVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFS 220
            MQA L+  L+ A+GA+AFV PSSF G  +A    SST+++MS     E M+GAT+P  ++DP+GF+S  DD++++K+REAE+KHGRVAMLA LG+++QENFHPFF     D+GPA+FHLQ+  ++F  L   L  G+GLVE  TI +GWSK+D+++ G    FVANL E+Y PGDL FDPL L P +      ++ KELNNGRLAMIA  G+W QELVD  T+A HF+
Sbjct:    1 MQATLITALACASGAAAFVAPSSFNGVAVANSVKSSTTLSMSEIKPLENMSGATSPVPYWDPLGFASKVDDQELQKYREAELKHGRVAMLAALGMIVQENFHPFFNTAGRDIGPAAFHLQKTMEEFSFLPFALVLGVGLVELTTINKGWSKQDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPTNPRERTNIRNKELNNGRLAMIAIWGMWAQELVDHLTLAEHFA 228          
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A835YMD9_9STRA (Fucoxanthin chlorophyll a/c protein, LI818 clade n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD9_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.040e-68
Identity = 116/224 (51.79%), Postives = 153/224 (68.30%), Query Frame = 0
Query:    3 QAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFK--EEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNG----FVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFS 220
            Q I  L+  AGASAF   SSF G+ +A R   +++M M     EEM+GATAP  ++DP G ++  DD++++K+REAE+KHGRVAMLA LG+++QENFHPFF     D+GPA+FHLQ+   +F  L L L  G+G VE  TI +GWS+ D+++ G    FVANL E+Y PGDL FDPL L P        ++ KELNNGRLAMIA  G+W QELVDG  +A H++
Sbjct:    5 QVIAALACVAGASAF--QSSFKGAAVASRVKPTSTMTMQINSLEEMSGATAPVPYWDPAGLAAKVDDQELQKYREAELKHGRVAMLATLGMVVQENFHPFFGTAGRDIGPAAFHLQETMKEFDALPLALVCGVGAVEFLTIDKGWSRSDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPSSPEERTNIRNKELNNGRLAMIAIWGMWAQELVDGLPLAEHYA 226          
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A835ZAU2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU2_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.970e-67
Identity = 114/229 (49.78%), Postives = 160/229 (69.87%), Query Frame = 0
Query:    1 MMQAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEE-----MAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQE-NFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNG----FVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHF 219
            M  + ++ +A  GA++  VP+    + ++  S+S+  MAM   E+     M+GATAP  F+DP+GF++  D ++++K+REAE+KHGRVAMLA LG+++QE  FHPFF    ADLGPA+FHLQ+V   +P L L L  G+G VESFTI +GWSK+D++ +G    FVANL E+Y PGDL FDPL L P+   G + ++ KE+NNGRLAMIA  G+W QELVDG ++  H+
Sbjct:    1 MKASCIVAAATIGAASAFVPAGQTCTGVSRASSSAMKMAMDPDEQYSLQNMSGATAPVPFWDPLGFAAQVDGQELQKYREAELKHGRVAMLACLGMIVQEAGFHPFFGTAGADLGPAAFHLQKVGVNYPTLPLLLLVGVGAVESFTINKGWSKQDYKSSGLGEGFVANLKEDYFPGDLGFDPLGLYPQSEEGRRSIRNKEINNGRLAMIAIWGMWAQELVDGMSLYEHY 229          
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: D8LTR4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR4_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.960e-57
Identity = 98/179 (54.75%), Postives = 120/179 (67.04%), Query Frame = 0
Query:   42 FKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFS 220
            + + +AGA+APF +FDP+  SS      VKKFRE+E+KH RVAMLAFLG+ +QE  HP FE G  D+GPA  H Q V + FPL+   L   +G+ E   I  GW K+  +    VA+L  +Y PG   FDPL L PKD AG K M TKELNNGRLAMIAT+G+W QELVDG+TI GH S
Sbjct:   62 YVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLG--VADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLS 238          
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A6S9JIV9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JIV9_HETAK)

HSP 1 Score: 171 bits (432), Expect = 4.400e-50
Identity = 102/201 (50.75%), Postives = 126/201 (62.69%), Query Frame = 0
Query:   10 AAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELV 210
            A +G SAFV  S+  G +   +S+SS  MA+   E+MAG + P GFFDP  FS  A++  +KKFREAE+KHGRVAMLA LG L+ +N       G A  GPA    QQ D   P   + +   IG++E  TI  GW   D     F A+L  +Y+PGDL FDPLNLKPK +  LK MQTKELNNGRLAMIA +G+  QELV
Sbjct:   11 AVSGTSAFVPQSN--GLKTLAKSSSSLKMAV---EDMAGVSGPLGFFDPFNFSKGAEESTIKKFREAEIKHGRVAMLAALGFLVGDNI-----SGWAGSGPALTQFQQADAVLPYFWVIVLSIIGVIEGRTILTGWESPDEAAGKFPADLKSDYIPGDLGFDPLNLKPKSSEELKIMQTKELNNGRLAMIAIVGMIVQELV 201          
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.440e-48
Identity = 90/167 (53.89%), Postives = 115/167 (68.86%), Query Frame = 0
Query:   48 GATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGW-SKRDFEDNGF-VANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDG 212
            G+++PF  FDP+G S+D DD  +KK++EAE+KHGR+AMLA LG+L+QE+FHP F  G A  GPA F  QQVD+ +PL  +     +  VE  TI +GW S R+ +  G  VA L E+Y PGD+ FDPL L PKD AG  EM+TKELN+ RLAMI   G+  QELV G
Sbjct:   38 GSSSPFPGFDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLF--GGAISGPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLG 202          
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: K8YPR7_NANGC (Light harvesting complex protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YPR7_NANGC)

HSP 1 Score: 165 bits (418), Expect = 2.830e-48
Identity = 91/174 (52.30%), Postives = 117/174 (67.24%), Query Frame = 0
Query:   47 AGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFF--EQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGW-SKRDFEDNG-FVANLNEEYLPGDLKFDPLNLKPK-DAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTI 215
            AGATAPFGFFDP+G S+    K++KK+RE+EVKHGRVAMLA +G+L+QE F PF+  E G +D GPA FH Q+++   P L + L  GI +VESFTI +GW S  +    G  +A L + Y+ GDL+FDPL L P  D       ++KELNNGRLAMIA  G+  QEL+    I
Sbjct:    3 AGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGGNTIAGLRDTYVAGDLEFDPLGLAPTADVDAFINQRSKELNNGRLAMIAWAGMVVQELISNSKI 176          
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A7S3YG15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG15_HETAK)

HSP 1 Score: 162 bits (409), Expect = 3.250e-46
Identity = 84/176 (47.73%), Postives = 110/176 (62.50%), Query Frame = 0
Query:   40 MSFKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTI 215
            M+  E++ G   P GFFDP+G S   ++  +KKFREAE+KHGR+AMLA +G+L+ E F+P F+ G+  LG   +H QQ D   P   + + F I L+E  TI   W   +   N  +A+L  +Y PGDL FDPL L P D A L EM+TKEL NGRLAM+   GI  QEL+ GQ I
Sbjct:   55 MALVEDLPGVLPPVGFFDPLGISQGKNENAIKKFREAELKHGRIAMLASVGILLAERFNPLFD-GKI-LGAGIYHFQQADQLLPYFWVIVLFAIALIEGQTILTAWDSVEDSQNKPIADLRADYEPGDLGFDPLGLAPSDPAALAEMRTKELQNGRLAMLGIAGIVAQELLTGQPI 228          
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Match: A0A0G4HNN3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNN3_9ALVE)

HSP 1 Score: 160 bits (405), Expect = 3.560e-45
Identity = 83/167 (49.70%), Postives = 106/167 (63.47%), Query Frame = 0
Query:   44 EEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGF-VANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQEL 209
            E++ G + PFG+FDP+ F     +K +KK+ EAE+KHGR+AMLA +G L+QE FHP      A    A    Q ++DK+P     +   IGL+E +TI +GW   D    GF  ANL   Y PGDL FDPLNL PKDA G K M TKE NNGRLAM+A +G+W QE+
Sbjct:   97 EKLPGVSGPFGYFDPLSFGMGTPEK-IKKWTEAEIKHGRLAMLASVGYLVQEFFHPLQPDAPAR---ALTQWQYIEDKWPQFDEIVLVVIGLIEGYTIAKGWQSPDEHSGGFFAANLKSSYEPGDLGFDPLNLLPKDAEGRKSMMTKERNNGRLAMLAIIGMWLQEI 259          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348679 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z091_9STRA1.160e-151100.00Fucoxanthin chlorophyll a/c binding protein n=1 Ta... [more]
A0A836CA40_9STRA3.800e-7353.95Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A835YMD9_9STRA3.040e-6851.79Fucoxanthin chlorophyll a/c protein, LI818 clade n... [more]
A0A835ZAU2_9STRA2.970e-6749.78Light harvesting complex protein n=1 Tax=Tribonema... [more]
D8LTR4_ECTSI1.960e-5754.75Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A6S9JIV9_HETAK4.400e-5050.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U0X8_9STRA1.440e-4853.89Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
K8YPR7_NANGC2.830e-4852.30Light harvesting complex protein n=2 Tax=Monodopsi... [more]
A0A7S3YG15_HETAK3.250e-4647.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4HNN3_9ALVE3.560e-4549.70Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 44..208
e-value: 5.2E-39
score: 134.4
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 35..221
e-value: 2.2E-42
score: 147.2
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 6..216
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 42..217
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 6..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:66630..70126 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348679mRNA_5308Tribonema minus UTEX_B_3156 mRNAContig_30 66630..70447 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348679|estExt_Genemark1.C_Ctg_300008 ID=Trimin1|348679|estExt_Genemark1.C_Ctg_300008|Name=jgi.p|Trimin1|348679|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
MMQAILLLSAAAGASAFVVPSSFAGSQLAVRSASSTSMAMSFKEEMAGAT
APFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPF
FEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDF
EDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIA
TLGIWGQELVDGQTIAGHFSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln