mRNA_11622 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|6010
Unique NamemRNA_11622
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|6010 vs. uniprot
Match: A0A835ZP52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP52_9STRA)

HSP 1 Score: 264 bits (674), Expect = 2.920e-87
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 2 
Query:   62 MASLSEKISAARQTQLSLWQRQQRALAAEARRHRAVVSQWLTAVALLRGALVPLWELQLQAVMRAAAAPPGQTAAXXXXXXXXXXXXMAADADLDEEDNASVAADSAAQIAASPVARAAAMFFAAAVAPQPRCGLETLGPGGRAAAVDTEPLRRLAGGSVDDND 553
            MASLSEKISAARQTQLSLWQRQQRALAAEARRHRAVVSQWLTAVALLRGALVPLWELQLQAVMRAAAAPPGQTAAXXXXXXXXXXXXMAADADLDEEDNASVAADSAAQIAASPVARAAAMFFAAAVAPQPRCGLETLGPGGRAAAVDTEPLRRLAGGSVDDND
Sbjct:    1 MASLSEKISAARQTQLSLWQRQQRALAAEARRHRAVVSQWLTAVALLRGALVPLWELQLQAVMRAAAAPPGQTAAXXXXXXXXXXXXMAADADLDEEDNASVAADSAAQIAASPVARAAAMFFAAAVAPQPRCGLETLGPGGRAAAVDTEPLRRLAGGSVDDND 164
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|6010 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZP52_9STRA2.920e-87100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:483276..484251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|6010|CE6009_28
Hectar predicted targeting categorymitochondrion
TranscriptId6332
TrackFilteredModels1
ProteinId6010
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|6010gene_11622Tribonema minus UTEX_B_3156 geneContig_107 483276..484251 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11622_1exon_11622_1Tribonema minus UTEX_B_3156 exonContig_107 483276..483334 +
exon_11622_2exon_11622_2Tribonema minus UTEX_B_3156 exonContig_107 483631..484251 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11622UTR5_11622Tribonema minus UTEX_B_3156 five_prime_UTRContig_107 483276..483334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11622CDS_11622Tribonema minus UTEX_B_3156 CDSContig_107 483633..484127 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11622UTR3_11622Tribonema minus UTEX_B_3156 three_prime_UTRContig_107 484128..484251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|6010Trimin1|6010|CE6009_28Tribonema minus UTEX_B_3156 polypeptideContig_107 483633..484127 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11622 ID=mRNA_11622|Name=jgi.p|Trimin1|6010|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=680bp|location=Sequence derived from alignment at Contig_107:483276..484251+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCCGCCTGCTCGCAAGGCGTACTGGAGGAGAAGTGCAGCACGTTTGAGC
GTGTCAGAGCCATGGCGAGCCTGTCCGAGAAGATCAGCGCGGCGCGGCAG
ACGCAGCTGTCGCTGTGGCAGCGGCAGCAGCGCGCGCTCGCCGCGGAGGC
GCGCAGGCACCGCGCGGTCGTGAGCCAGTGGCTCACCGCCGTCGCGCTGC
TCAGGGGCGCGCTGGTGCCGCTGTGGGAGCTGCAGCTGCAGGCCGTGATG
CGCGCGGCGGCCGCGCCGCCGGGGCAGACGGCGGCGGCGACGGCGGCGGC
AGTTGCGGCGGCGGCGGCGGGGATGGCGGCGGATGCGGATTTGGACGAAG
AAGACAACGCGTCGGTAGCGGCAGACAGCGCGGCGCAGATTGCCGCGTCG
CCGGTGGCAAGGGCGGCAGCCATGTTCTTTGCCGCAGCGGTTGCGCCGCA
GCCGCGTTGTGGGCTGGAGACACTGGGCCCAGGAGGCAGAGCGGCAGCAG
TGGATACAGAGCCGCTTCGAAGATTAGCAGGCGGCTCTGTCGATGACAAT
GACTGAGCGCGCGTCAGTGCTGCATGGCAGACGTCACCAGGGGCGGACAG
CAGGGGCAACGATTGCCGCTGGCGCTACTACACTAGTTGACATACAGAGT
GAACATCTATGATATTTTGCAGCCCCGTCA
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protein sequence of jgi.p|Trimin1|6010

>Trimin1|6010|CE6009_28 ID=Trimin1|6010|CE6009_28|Name=jgi.p|Trimin1|6010|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp
MASLSEKISAARQTQLSLWQRQQRALAAEARRHRAVVSQWLTAVALLRGA
LVPLWELQLQAVMRAAAAPPGQTAAATAAAVAAAAAGMAADADLDEEDNA
SVAADSAAQIAASPVARAAAMFFAAAVAPQPRCGLETLGPGGRAAAVDTE
PLRRLAGGSVDDND*
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mRNA from alignment at Contig_107:483276..484251+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11622 ID=mRNA_11622|Name=jgi.p|Trimin1|6010|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=976bp|location=Sequence derived from alignment at Contig_107:483276..484251+ (Tribonema minus UTEX_B_3156 )
GTCCGCCTGCTCGCAAGGCGTACTGGAGGAGAAGTGCAGCACGTTTGAGC
GTGTCAGAGGTTAGTATTGCTGCAGCACTGCCCGTTGACCATTGCATCCA
GAAGCGAACCTTACATATCACTGCCGATGTTGAAGTGTGCCTGTTGTGGT
TTGAAGCCTACATTTACATCCTCTCCGTGCGTACCACGTAGCGTTGATGC
GGTGACCAAGTGGGCGAGTGACGTGGCAGCCGCCGGTGCCTGGTGCCGCA
GTACCTTGCATGATACCTCGTTGCTGCGCGAACTGCCCACCAAATCAGAC
GACACGCAGCCCCCTTCACCCGTCGCCCACCCCTCGTGCGCACCGCCCGC
CGCAGCCATGGCGAGCCTGTCCGAGAAGATCAGCGCGGCGCGGCAGACGC
AGCTGTCGCTGTGGCAGCGGCAGCAGCGCGCGCTCGCCGCGGAGGCGCGC
AGGCACCGCGCGGTCGTGAGCCAGTGGCTCACCGCCGTCGCGCTGCTCAG
GGGCGCGCTGGTGCCGCTGTGGGAGCTGCAGCTGCAGGCCGTGATGCGCG
CGGCGGCCGCGCCGCCGGGGCAGACGGCGGCGGCGACGGCGGCGGCAGTT
GCGGCGGCGGCGGCGGGGATGGCGGCGGATGCGGATTTGGACGAAGAAGA
CAACGCGTCGGTAGCGGCAGACAGCGCGGCGCAGATTGCCGCGTCGCCGG
TGGCAAGGGCGGCAGCCATGTTCTTTGCCGCAGCGGTTGCGCCGCAGCCG
CGTTGTGGGCTGGAGACACTGGGCCCAGGAGGCAGAGCGGCAGCAGTGGA
TACAGAGCCGCTTCGAAGATTAGCAGGCGGCTCTGTCGATGACAATGACT
GAGCGCGCGTCAGTGCTGCATGGCAGACGTCACCAGGGGCGGACAGCAGG
GGCAACGATTGCCGCTGGCGCTACTACACTAGTTGACATACAGAGTGAAC
ATCTATGATATTTTGCAGCCCCGTCA
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Coding sequence (CDS) from alignment at Contig_107:483276..484251+

>mRNA_11622 ID=mRNA_11622|Name=jgi.p|Trimin1|6010|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_107:483276..484251+ (Tribonema minus UTEX_B_3156 )
ATGGCGAGCCTGTCCGAGAAGATCAGCGCGGCGCGGCAGACGCAGCTGTC
GCTGTGGCAGCGGCAGCAGCGCGCGCTCGCCGCGGAGGCGCGCAGGCACC
GCGCGGTCGTGAGCCAGTGGCTCACCGCCGTCGCGCTGCTCAGGGGCGCG
CTGGTGCCGCTGTGGGAGCTGCAGCTGCAGGCCGTGATGCGCGCGGCGGC
CGCGCCGCCGGGGCAGACGGCGGCGGCGACGGCGGCGGCAGTTGCGGCGG
CGGCGGCGGGGATGGCGGCGGATGCGGATTTGGACGAAGAAGACAACGCG
TCGGTAGCGGCAGACAGCGCGGCGCAGATTGCCGCGTCGCCGGTGGCAAG
GGCGGCAGCCATGTTCTTTGCCGCAGCGGTTGCGCCGCAGCCGCGTTGTG
GGCTGGAGACACTGGGCCCAGGAGGCAGAGCGGCAGCAGTGGATACAGAG
CCGCTTCGAAGATTAGCAGGCGGCTCTGTCGATGACAATGACTGA
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