mRNA_11577 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|5777
Unique NamemRNA_11577
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|5777 vs. uniprot
Match: A0A835ZJR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJR4_9STRA)

HSP 1 Score: 307 bits (787), Expect = 3.410e-105
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 3 
Query:   66 MAGDVTLEGMSELMEMGLADLTRNLHALLPPNEQTLHAYLLERRARKPPSAEALYSKGAITIDEYAEHKFPELAALRRERAAAYPLPEAPRACVVCVAPTALLRCRECPSRVCAECAVSACCQAPLLFHEMYCLRFGAPPGVGKPPPRARRKP 524
            MAGDVTLEGMSELMEMGLADLTRNLHALLPPNEQTLHAYLLERRARKPPSAEALYSKGAITIDEYAEHKFPELAALRRERAAAYPLPEAPRACVVCVAPTALLRCRECPSRVCAECAVSACCQAPLLFHEMYCLRFGAPPGVGKPPPRARRKP
Sbjct:    1 MAGDVTLEGMSELMEMGLADLTRNLHALLPPNEQTLHAYLLERRARKPPSAEALYSKGAITIDEYAEHKFPELAALRRERAAAYPLPEAPRACVVCVAPTALLRCRECPSRVCAECAVSACCQAPLLFHEMYCLRFGAPPGVGKPPPRARRKP 153
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|5777 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZJR4_9STRA3.410e-105100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:232080..234355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|5777|CE5776_61
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_000180.1
TranscriptId6099
TrackFilteredModels1
ProteinId5777
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|5777gene_11577Tribonema minus UTEX_B_3156 geneContig_107 232080..234355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|5777Trimin1|5777|CE5776_61Tribonema minus UTEX_B_3156 polypeptideContig_107 232135..234290 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11577_3exon_11577_3Tribonema minus UTEX_B_3156 exonContig_107 232080..232382 -
exon_11577_2exon_11577_2Tribonema minus UTEX_B_3156 exonContig_107 233160..233277 -
exon_11577_1exon_11577_1Tribonema minus UTEX_B_3156 exonContig_107 234195..234355 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11577UTR3_11577Tribonema minus UTEX_B_3156 three_prime_UTRContig_107 232080..232134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11577CDS_11577Tribonema minus UTEX_B_3156 CDSContig_107 234195..234290 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11577UTR5_11577Tribonema minus UTEX_B_3156 five_prime_UTRContig_107 234291..234355 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11577 ID=mRNA_11577|Name=jgi.p|Trimin1|5777|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_107:232080..234355- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AACTCGGCAACTTCAACTGTGCCGCTCTGCCCCCCCCCCCCGGGGCGCCG
CGCGCAGCGCTCTACATGGCGGGCGACGTGACGCTGGAGGGCATGAGCGA
GCTCATGGAGATGGGCCTGGCGGACCTCACGCGCAACCTGCACGCGCTGC
TGCCGCCGAACGAGCAAACGCTGCATGCCTACCTACTGGAGCGGCGCGCG
CGCAAGCCGCCGTCCGCGGAGGCGCTGTACAGCAAGGGCGCCATCACCAT
AGACGAGTACGCCGAACACAAGTTTCCGGAGCTTGCGGCACTGCGTAGGG
AGCGCGCCGCCGCGTACCCGCTGCCGGAGGCGCCGCGCGCGTGCGTCGTC
TGCGTGGCGCCGACGGCGCTGCTGCGCTGCCGCGAGTGCCCGTCGCGGGT
GTGTGCGGAGTGCGCCGTCTCCGCGTGCTGCCAGGCGCCGCTGCTGTTCC
ACGAGATGTACTGCCTGCGGTTCGGCGCGCCGCCGGGTGTCGGAAAGCCG
CCGCCGCGCGCGCGCCGGAAACCGTGATCTATGTTGATTGTTGCAACTAG
CACTGTATGAATCATAAAGTGCCTGACTGCAA
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protein sequence of jgi.p|Trimin1|5777

>Trimin1|5777|CE5776_61 ID=Trimin1|5777|CE5776_61|Name=jgi.p|Trimin1|5777|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp
MAGDVTLEGMSELMEMGLADLTRNLHALLPPNEQTLHAYLLERRARKPPS
AEALYSKGAITIDEYAEHKFPELAALRRERAAAYPLPEAPRACVVCVAPT
ALLRCRECPSRVCAECAVSACCQAPLLFHEMYCLRFGAPPGVGKPPPRAR
RKP*
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mRNA from alignment at Contig_107:232080..234355-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11577 ID=mRNA_11577|Name=jgi.p|Trimin1|5777|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2276bp|location=Sequence derived from alignment at Contig_107:232080..234355- (Tribonema minus UTEX_B_3156 )
AACTCGGCAACTTCAACTGTGCCGCTCTGCCCCCCCCCCCCGGGGCGCCG
CGCGCAGCGCTCTACATGGCGGGCGACGTGACGCTGGAGGGCATGAGCGA
GCTCATGGAGATGGGCCTGGCGGACCTCACGCGCAACCTGCACGCGCTGC
TGCCGCCGAACGTACGTCATGCATGCACACCGCTAGCGTGTCACATCCTG
AAAATAATTTGAAGTACATGTTTCGATTCGGCAATCTTACAGCCTGAATG
TATGCTGTGGATGTTTGTGCGCACCTCACGCGCAACCTGCACGCGCTGCT
GCCGCCGCACGTGCGTATGCGTATGTATGCACACAGCTGGCGCGACACAT
CCTGAAGATTTGCGTGTCCGGGCCCGCAATCTCAAGGCCTGAATGTTGCA
GTGGATGTTTGTGCACCACTGGCACTGTACTCGTGAGGTCTGACCGTTGT
GGGTATTCATTCGCAGCCCGCACGCACAAATGAAGTCTCTGTGGGCAGCG
CCGCGCCCGCAAGAGCGGTAGGGTGTGCCAGCGCTGCCTGCATGCGTTGC
TGCCACGGCGTTGAAGCCAGCACAGCATGGATGTCGCAATTGCTCGCCGT
CCACATCATTTTCACGGGCGCAAAACTCGCCTGCCGTGCTGCCATCTCCT
TGCGCGCGCGCGGCCGCGCGCGCGGCGGCGCTTATCTTCAACAGAACAAA
AACTTCAAGTTGTAGGCAGGCTGACATTAGGTGAGCATGCACTTTAGGCA
GCTGCTCGGCGGTTGGGATGAGTGCCTCGATGCCGCTGCACCTGCACAGC
CGTACGAGACTTACACCGTGCACGACACAGGTTCCGCTGCGGCAAGCCGC
TGTCTCACGCGCGGTCCACTCCCAGTGCATGTGAGCATGAGGCCTTAATA
GACACGCTCTGGAAAGTACAGCAGCAGCGCTCAGGCAGGCCAACTGTCTC
GTTTCTCACACAGTCATTGGCGCCAGTGCGCTTGGACCCCAACTTGCGCA
ATGAAACCGCCTTTACAACTGCATATTGCTCTATTGACCGGCGTGGCATT
TGCCGCCTGCCCGCCCACGCCGCCGCAGGAGCAAACGCTGCATGCCTACC
TACTGGAGCGGCGCGCGCGCAAGCCGCCGTCCGCGGAGGCGCTGTACAGC
AAGGGCGCCATCACCATAGACGAGTACGCCGAACACAAGTTTCCGGGTGA
GACGTGCGCTGCGGCTGCACAGCACTGCGTAGCTGCATGGCACTGCATGG
CACGCGGGTAGCTTGGTGCATGCACATCACACGGTAGTCGCACATGCGAG
ATAGGGTCAAAGAGGCTGCGGACGGCGCATGCCGGCAGTCGTGTGGTACG
CGGGGTGCGCTGATTTGTGTGCGTGCGCACGACGCTACCGGCGCATGTGG
CCCTTCGCTCGGCTACAGGCGCATCTGCAGCGCCGGCTACAGGCGTGATT
GCAGCGCCGCCACGTCACGCAGCGCAGAGTGGCATCCTCCTGGAGCAGCA
CTTTTGACTGCGCCAGAGCAGAACCATGTCGTCGACGATGCATGTGCATG
CAGATCTGCACTGCGGAGGGGCAACTTGAACTCCTCAGCGCCGCCCTTCA
CTGCAAGGGCCGTGACTGCGCCTAGTAGCTGCACGCCATGCGCTGTGAGC
ATGCACATGCTCATTGCCTCACGCGCACTCAGCTGCTCTCCCTGGCCCGG
CCTGCCGGCCTCCTGCGCTGCGCCGCACGCTCACAGCACTGCTCAGTCTG
CAGCTCAGCGCTCAACCGCCTAGGTCCCTGAGCTGCCTGCGCTGCAGCTA
CTTGGACTGCTTGGCTTGCGTCAAGCGCTGCCGCGCACACACAGACGGCA
CTCGTGCAGCGTCGACCACTTTAGAAACCTTCACTCACGTGCACGAGAGA
ACTTTCGAACCCCCCGTTCCTCACCGCGCCGACTTAACTCTGCGCACCTT
CGCCCCATCGTGCACGCACGCAGAGCTTGCGGCACTGCGTAGGGAGCGCG
CCGCCGCGTACCCGCTGCCGGAGGCGCCGCGCGCGTGCGTCGTCTGCGTG
GCGCCGACGGCGCTGCTGCGCTGCCGCGAGTGCCCGTCGCGGGTGTGTGC
GGAGTGCGCCGTCTCCGCGTGCTGCCAGGCGCCGCTGCTGTTCCACGAGA
TGTACTGCCTGCGGTTCGGCGCGCCGCCGGGTGTCGGAAAGCCGCCGCCG
CGCGCGCGCCGGAAACCGTGATCTATGTTGATTGTTGCAACTAGCACTGT
ATGAATCATAAAGTGCCTGACTGCAA
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Coding sequence (CDS) from alignment at Contig_107:232080..234355-

>mRNA_11577 ID=mRNA_11577|Name=jgi.p|Trimin1|5777|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=462bp|location=Sequence derived from alignment at Contig_107:232080..234355- (Tribonema minus UTEX_B_3156 )
ATGGCGGGCGACGTGACGCTGGAGGGCATGAGCGAGCTCATGGAGATGGG
CCTGGCGGACCTCACGCGCAACCTGCACGCGCTGCTGCCGCCGAACGAGC
AAACGCTGCATGCCTACCTACTGGAGCGGCGCGCGCGCAAGCCGCCGTCC
GCGGAGGCGCTGTACAGCAAGGGCGCCATCACCATAGACGAGTACGCCGA
ACACAAGTTTCCGGAGCTTGCGGCACTGCGTAGGGAGCGCGCCGCCGCGT
ACCCGCTGCCGGAGGCGCCGCGCGCGTGCGTCGTCTGCGTGGCGCCGACG
GCGCTGCTGCGCTGCCGCGAGTGCCCGTCGCGGGTGTGTGCGGAGTGCGC
CGTCTCCGCGTGCTGCCAGGCGCCGCTGCTGTTCCACGAGATGTACTGCC
TGCGGTTCGGCGCGCCGCCGGGTGTCGGAAAGCCGCCGCCGCGCGCGCGC
CGGAAACCGTGA
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