mRNA_320 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132092
Unique NamemRNA_320
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Match: A0A835Z139_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z139_9STRA)

HSP 1 Score: 218 bits (554), Expect = 3.630e-72
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1
Query:    1 PGGLLYGKICPAGSNDSGTTCWVSRGVGTIPDIDTTGRGAGYAWKFGDKLNENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLCTRKTCP 291
            PGGLLYGKICPAGSNDSGTTCWVSRGVGTIPDIDTTGRGAGYAWKFGDKLNENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLCTRKTCP
Sbjct:    1 PGGLLYGKICPAGSNDSGTTCWVSRGVGTIPDIDTTGRGAGYAWKFGDKLNENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLCTRKTCP 97          
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Match: A0A1Z5KH64_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KH64_FISSO)

HSP 1 Score: 84.3 bits (207), Expect = 5.940e-17
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   28 CPAGSNDSGTTCWVSRGVGTIPDIDTTGRGAGYAWKFGDKLNENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLC 273
            C AG  D G  C ++            GRGAGY W+FGD LN++GM  RCE DHG+GNC+K  A++YPKC +G+S  GC +C
Sbjct:  312 CKAGWRDDGLFCRLAE----------YGRGAGYPWQFGDPLNDSGMFRRCEADHGRGNCEKWGAVVYPKCRSGYSPFGCCIC 383          
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Match: A0A485KCC1_9STRA (Aste57867_2248 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCC1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.250e-17
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query:  109 GRGAGYAWKFGDKLNENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLC 273
            GRG GY WKFGD LN++GM  RCE+D GKGNC+KC  ++YPKC +G+   GC +C
Sbjct:   24 GRGEGYPWKFGDALNDSGMILRCERDKGKGNCEKCGQIIYPKCASGYVVLGCKIC 78          
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Match: A0A485LCP4_9STRA (Aste57867_18776 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCP4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.480e-17
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  109 GRGAGYAWKFGDKLNENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLCTRKT 285
            GRG GY WKFGD LN++GM  RCE+D GKGNC+ C  ++YPKC +G++A  C +C  KT
Sbjct:   66 GRGEGYPWKFGDALNDSGMILRCERDKGKGNCESCGQIIYPKCASGYAAISCKVCRAKT 124          
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Match: A0A024TP89_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TP89_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.430e-16
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1
Query:  109 GRGAGYAWKFGDKLNENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLC 273
            GRGAGY WKFGD LN+NGM  RCE DHG G C+K  A++YPKC  G++A GC +C
Sbjct:  130 GRGAGYPWKFGDGLNDNGMFRRCEGDHGAGKCEKSGAVVYPKCRDGYTAFGCCIC 184          
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Match: UPI0011AECE62 (hypothetical protein n=1 Tax=Methyloterricola oryzae TaxID=1495050 RepID=UPI0011AECE62)

HSP 1 Score: 79.7 bits (195), Expect = 1.720e-15
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  109 GRGAGYAWKFGDKLNENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLCTRKTCP 291
            GRGAGY WKFGD LN+NGM +RCE   GKGNC+K  AM YPKC  G++  GC +C     P
Sbjct:   94 GRGAGYPWKFGDGLNDNGMINRCEGAQGKGNCEKWGAMYYPKCKPGYTNVGCCICRPANTP 154          
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Match: A0A7S3LAF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LAF6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.630e-15
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  109 GRGAGYAWKFGDKLNENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLC--TRKTCP 291
            GRGAGY WKFGD  N+ GM  RCE  HG+GNC+K  A++YPKC AG+   GC +C   +  CP
Sbjct:   50 GRGAGYPWKFGDGFNDRGMYKRCEARHGRGNCEKWGAIVYPKCRAGYKPFGCCICRPAKPDCP 112          
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Match: G0QSP2_ICHMG (Uncharacterized protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QSP2_ICHMG)

HSP 1 Score: 74.7 bits (182), Expect = 6.590e-14
Identity = 39/96 (40.62%), Postives = 49/96 (51.04%), Query Frame = 1
Query:    4 GGLLYGKICPAGSNDSGTTCWVSRGVGTIPDIDTTGRGAGYAWKFGDKLNENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLCTRKTCP 291
            G  L  ++CP G  D G  C               GRGAGYAWKFGD  N N    RCEKD+ +  C+K   ++YPKC  G+   GC +C+   CP
Sbjct:  116 GCCLCAQLCPQGFTDQGLFC---------AKAAPYGRGAGYAWKFGDSFNLNNALQRCEKDNSQYGCEKSGLLIYPKCKPGFHPVGCCICS-PDCP 201          
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Match: A0A024TLS9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLS9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.390e-14
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  109 GRGAGYAWKFGDKLNENGMTSRCEKDHG-KGNCQKCLAMMYPKCDAGWSASGCNLCT 276
            GRG GY WKFGD LN+  M  RCEKD+G  G C+K   ++YPKC+ G+S++GC +C+
Sbjct:   14 GRGVGYPWKFGDSLNDVAMFKRCEKDNGGPGTCEKNGLVVYPKCEVGYSSTGCCICS 70          
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Match: A0A418AER3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AER3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.490e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  109 GRGAGYAWKFGDKLNENGMTSRCEKDHG-KGNCQKCLAMMYPKCDAGWSASGCNLCT 276
            GRG GY WKFGD LN+  M  RCEKD+G  G C+K   ++YPKC+ G+S++GC +C+
Sbjct:   98 GRGVGYPWKFGDSLNDVAMFKRCEKDNGGPGTCEKNGLVVYPKCEVGYSSTGCCICS 154          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132092 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835Z139_9STRA3.630e-72100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A1Z5KH64_FISSO5.940e-1748.78Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A485KCC1_9STRA8.250e-1760.00Aste57867_2248 protein n=1 Tax=Aphanomyces stellat... [more]
A0A485LCP4_9STRA8.480e-1757.63Aste57867_18776 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TP89_9STRA7.430e-1663.64Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
UPI0011AECE621.720e-1559.02hypothetical protein n=1 Tax=Methyloterricola oryz... [more]
A0A7S3LAF6_9STRA4.630e-1555.56Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
G0QSP2_ICHMG6.590e-1440.63Uncharacterized protein n=1 Tax=Ichthyophthirius m... [more]
A0A024TLS9_9STRA8.390e-1454.39Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A418AER3_9STRA1.490e-1254.39Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:927310..927600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132092|gw1.3.77.1
Max annot lvl2759|Eukaryota
EggNOG OGs2DTY2@1|root,2S6IW@2759|Eukaryota
Evalue1.22e-16
Seed ortholog157072.XP_008875256.1
Hectar predicted targeting categoryother localisation
TranscriptId132414
TrackFilteredModels1
ProteinId132092
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132092gene_320Tribonema minus UTEX_B_3156 geneContig_3 927310..927600 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_320_1exon_320_1Tribonema minus UTEX_B_3156 exonContig_3 927310..927600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_320CDS_320Tribonema minus UTEX_B_3156 CDSContig_3 927310..927600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132092Trimin1|132092|gw1.3.77.1Tribonema minus UTEX_B_3156 polypeptideContig_3 927310..927600 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_320 ID=mRNA_320|Name=jgi.p|Trimin1|132092|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=291bp|location=Sequence derived from alignment at Contig_3:927310..927600+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGGCGGGCTGCTGTACGGCAAGATCTGTCCTGCGGGCTCCAACGACTC
CGGGACGACGTGCTGGGTGTCTCGCGGAGTCGGCACCATTCCGGACATCG
ACACCACGGGTCGCGGCGCCGGGTACGCTTGGAAGTTCGGAGATAAACTG
AACGAAAACGGCATGACGTCGAGGTGCGAGAAGGACCACGGCAAGGGGAA
CTGTCAGAAGTGCCTGGCGATGATGTACCCTAAGTGCGACGCGGGTTGGA
GCGCCAGCGGGTGCAACCTCTGCACTCGCAAGACGTGTCCC
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protein sequence of jgi.p|Trimin1|132092

>Trimin1|132092|gw1.3.77.1 ID=Trimin1|132092|gw1.3.77.1|Name=jgi.p|Trimin1|132092|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=97bp
PGGLLYGKICPAGSNDSGTTCWVSRGVGTIPDIDTTGRGAGYAWKFGDKL
NENGMTSRCEKDHGKGNCQKCLAMMYPKCDAGWSASGCNLCTRKTCP
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mRNA from alignment at Contig_3:927310..927600+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_320 ID=mRNA_320|Name=jgi.p|Trimin1|132092|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=291bp|location=Sequence derived from alignment at Contig_3:927310..927600+ (Tribonema minus UTEX_B_3156 )
CCGGGCGGGCTGCTGTACGGCAAGATCTGTCCTGCGGGCTCCAACGACTC CGGGACGACGTGCTGGGTGTCTCGCGGAGTCGGCACCATTCCGGACATCG ACACCACGGGTCGCGGCGCCGGGTACGCTTGGAAGTTCGGAGATAAACTG AACGAAAACGGCATGACGTCGAGGTGCGAGAAGGACCACGGCAAGGGGAA CTGTCAGAAGTGCCTGGCGATGATGTACCCTAAGTGCGACGCGGGTTGGA GCGCCAGCGGGTGCAACCTCTGCACTCGCAAGACGTGTCCC
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Coding sequence (CDS) from alignment at Contig_3:927310..927600+

>mRNA_320 ID=mRNA_320|Name=jgi.p|Trimin1|132092|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=291bp|location=Sequence derived from alignment at Contig_3:927310..927600+ (Tribonema minus UTEX_B_3156 )
CCGGGCGGGCTGCTGTACGGCAAGATCTGTCCTGCGGGCTCCAACGACTC
CGGGACGACGTGCTGGGTGTCTCGCGGAGTCGGCACCATTCCGGACATCG
ACACCACGGGTCGCGGCGCCGGGTACGCTTGGAAGTTCGGAGATAAACTG
AACGAAAACGGCATGACGTCGAGGTGCGAGAAGGACCACGGCAAGGGGAA
CTGTCAGAAGTGCCTGGCGATGATGTACCCTAAGTGCGACGCGGGTTGGA
GCGCCAGCGGGTGCAACCTCTGCACTCGCAAGACGTGTCCC
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