mRNA_9565 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348654
Unique Name	mRNA_9565
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348654 vs. uniprot
Match: A0A835Z1M1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.170e-43
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 3

Query:  450 MRAPSPATARAPSSALLRWWACARRGKQAQNSRGLDACPWWRQQCPGARTSVTTGARLISNMCGAHASLEG 662
            MRAPSPATARAPSSALLRWWACARRGKQAQNSRGLDACPWWRQQCPGARTSVTTGARLISNMCGAHASLEG
Sbjct:    1 MRAPSPATARAPSSALLRWWACARRGKQAQNSRGLDACPWWRQQCPGARTSVTTGARLISNMCGAHASLEG 71

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BLAST of jgi.p|Trimin1|348654 vs. uniprot
Match: A0A835Z722_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z722_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.810e-10
Identity = 46/87 (52.87%), Postives = 52/87 (59.77%), Query Frame = 2

Query:  269 YFLPDILQRAIIYV*AGARRH-ELLVGKSVVVQTQQRFKDD-VGDPPGQL-TVKFNITIISKDNAGAITSYGQGPE*CIAALVGMRA 520
            Y LP+ LQR + Y+   A        GK   VQT QRFKDD +GDP     TVKFNIT I KD AGA+TS GQG    + AL GMRA
Sbjct:  417 YLLPNFLQRTMPYLFELAPDGMSYQWGKVCFVQTPQRFKDDGIGDPLANWGTVKFNITNIGKDGAGAVTSCGQGSVWRVDALSGMRA 503

[Close]

BLAST of jgi.p|Trimin1|348654 vs. uniprot
Match: A0A835Z7S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.450e-7
Identity = 41/88 (46.59%), Postives = 48/88 (54.55%), Query Frame = 2

Query:  269 YFLPDILQRAIIYV*AGARRHELLV-------GKSVVVQTQQRFKDD-VGDPPGQL-TVKFNITIISKDNAGAITSYGQGPE*CIAAL 505
            Y LPD LQR + Y+       EL         GK   VQT QRFKDD +G+P      VKFNIT + KD AGA+TS GQG    + AL
Sbjct:  597 YLLPDFLQRTVPYL------FELTPDGMGYQWGKVCFVQTPQRFKDDGIGNPLANWGAVKFNITNVGKDGAGAVTSCGQGAVWRVDAL 678

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348654 vs. uniprot

BLAST of jgi.p|Trimin1|348654 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835Z1M1_9STRA	3.170e-43	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A835Z722_9STRA	1.810e-10	52.87	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z7S9_9STRA	3.450e-7	46.59	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_29	contig	Contig_29:290401..295328 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348654\|estExt_Genemark1.C_Ctg_290044
Hectar predicted targeting category	other localisation
TranscriptId	348976
Track	FilteredModels1
ProteinId	348654

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348654	gene_9565	Tribonema minus UTEX_B_3156	gene	Contig_29 290401..295328 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348654	Trimin1\|348654\|estExt_Genemark1.C_Ctg_290044	Tribonema minus UTEX_B_3156	polypeptide	Contig_29 293564..295326 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9565_1	exon_9565_1	Tribonema minus UTEX_B_3156	exon	Contig_29 290401..290480 +
exon_9565_2	exon_9565_2	Tribonema minus UTEX_B_3156	exon	Contig_29 291241..291340 +
exon_9565_3	exon_9565_3	Tribonema minus UTEX_B_3156	exon	Contig_29 291735..291846 +
exon_9565_4	exon_9565_4	Tribonema minus UTEX_B_3156	exon	Contig_29 292282..292371 +
exon_9565_5	exon_9565_5	Tribonema minus UTEX_B_3156	exon	Contig_29 293497..293671 +
exon_9565_6	exon_9565_6	Tribonema minus UTEX_B_3156	exon	Contig_29 295222..295328 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_9565	UTR5_9565	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_29 290401..290480 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9565	CDS_9565	Tribonema minus UTEX_B_3156	CDS	Contig_29 293564..293671 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_9565	UTR3_9565	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_29 295327..295328 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_29:290401..295328+
coding sequence from alignment at Contig_29:290401..295328+

spliced messenger RNA

>mRNA_9565 ID=mRNA_9565|Name=jgi.p|Trimin1|348654|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=664bp|location=Sequence derived from alignment at Contig_29:290401..295328+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGTGCCGCTGGAAGGAGTCCTGCAGTTTGTGCCGCTGGCTCTGGTGGCTG
ATGGACACATGCATCTGGACCGAGCAAAAGGTTGAGGCGGGCCACGTGTG
CAGTTCCTGGAGCGTGTTACCTGCGCACCCTTGTCAGCCACACCCATGAG
GATGCCAGCCGACCCACCATCAGCCCCAAGGCGGCAACCTCAGCGCGGCC
ATCTGGGGCCTGCGCGCAGATACCGGGCTGGTCTTCATAGGGGCAACGGC
AGTGCTCGTCGGCAACGCTACTTCCTACCCGATATCTTGCAGAGGGCCAT
CATATACGTGTGAGCTGGCGCCCGGCGGCATGAGCTACTAGTGGGGAAAA
GTGTGGTTGTGCAGACGCAGCAGAGGTTCAAGGATGACGTTGGCGACCCC
CCTGGCCAACTCACCGTGAAGTTCAACATCACCATCATCAGCAAGGACAA
TGCGGGCGCCATCACCAGCTACGGCCAGGGCCCCGAGTAGTGCATTGCTG
CGCTGGTGGGCATGCGCGCGGCGAGGCAAACAAGCGCAAAATAGCCGTGG
CCTTGACGCGTGCCCATGGTGGCGTCAGCAGTGTCCAGGAGCTAGAACAA
GCGTCACCACAGGAGCGCGCCTCATTAGTAACATGTGTGGCGCTCATGCC
AGCTTGGAGGGTTG

protein sequence of jgi.p|Trimin1|348654

>Trimin1|348654|estExt_Genemark1.C_Ctg_290044 ID=Trimin1|348654|estExt_Genemark1.C_Ctg_290044|Name=jgi.p|Trimin1|348654|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
MRAPSPATARAPSSALLRWWACARRGKQAQNSRGLDACPWWRQQCPGART
SVTTGARLISNMCGAHASLEG

mRNA from alignment at Contig_29:290401..295328+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9565 ID=mRNA_9565|Name=jgi.p|Trimin1|348654|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4928bp|location=Sequence derived from alignment at Contig_29:290401..295328+ (Tribonema minus UTEX_B_3156 )
TGTGCCGCTGGAAGGAGTCCTGCAGTTTGTGCCGCTGGCTCTGGTGGCTG
ATGGACACATGCATCTGGACCGAGCAAAAGGTACAGTCACGCTCTTGTAA
CTGCAAACTGCATTGGCATGGGCGTGCATGAAAGATCATGAACAAATTAG
AGCTGAGCGGATCTGCAACAGCTGCTGCTGCCTTCATCTGAGTCGCCAGT
GACGCTGCTCACACTTTGCAGTGCAGCCACAGAAGGCCCATTATTTGTAT
GGCTAAGTCTTCTTCACACCCTGTTGGGCTGTGGACACACGGGTGGGACC
TGTGTGCATTTAAATGTTTATTGCAGTGGCTAAATTTTACGCATAAGATG
GTTAAAATGCTCAGAGATGGAAAGCACACCTTGAAGTGGCTGAGAAAGCG
ATGGACAATTCACGAATCTCATGGAGGTGCGTCGTGACTTGATACCCCCG
TGCCACATCACTCTCTCTTGTATAACTCGTGTCAATGTTGTCATACGTTT
GCTGTTGTAGACTTGTCTTAGCGTTGTGATGTTGGCGGTGCATTCAAACA
TGATGCTGGTTCCTATACTGCCATCACGCGCGCGTGCAATCATGTGCCTC
ACGCTGTTGTCGGCATTGGTCCTCTTGCTTTGGAGGCATCACATCACTAT
CATCACGCCAGTTCACCTGTGTCACTGGCATTTCATGGTCAGGTATGCAT
TCTGGCATCACTAGCTGATGAGCTTTGAGCACTTCAAGTCCACATAGGCA
CTGTCGACCTAGCCCTTAGCTCAGCTGTATCAAGCTGCAACACCTTCAAT
TGCCAATGCTCACTGCCAGCATCGTTCGCCCTGCCTGCAGGTTGAGGCGG
GCCACGTGTGCAGTTCCTGGAGCGTGTTACCTGCGCACCCTTGTCAGCCA
CACCCATGAGGATGCCAGCCGACCCACCATCAGCCCCAAGGTATGTATGT
ATGTACCTCAAGTTGTGAGGCGTTGAACTTTTCACACACCTTAGCTGTCG
GTGCAATATTGTCACAAACTTCGAAGTATTTGACTTTGAGCTGCGATCTG
CCTCCGTTCTGCTCATTGTAACATGCCAACCGCCACATCGTTCTTGCCAG
GCGCAACTCTGAGCCACACAGTAGCGAATCGGATGTTTGCAATGCAATAT
GCCTGCAAATAGTGTTGTACCATAGCCAGTTGCAACAGCGTTCTTGCCCA
CCTCAATTGCGCGAAGCGCATTTGTTGAAGTTGCTGCAACCTCGTAATGC
ACAATTGCCAGATCGTGAGGTGCATGCACGCGCCTTCAGTTGACGCGGAG
CGCTGATTCAAGCGCTCGTCGCTGCATCGTGCAGGCGGCAACCTCAGCGC
GGCCATCTGGGGCCTGCGCGCAGATACCGGGCTGGTCTTCATAGGGGCAA
CGGCAGTGCTCGTCGGCAACGCTACTTCCTACCCGATATCTTGCAGGTGC
TTGTGAAGTTTGTGTGCTTTGGCTGGGACTTGATGTAAATATGGTGCGCT
TCAGTTTGCATGGCGCAAGCTGCTAGCGTACGCGGCTTCGCTGAGAACTA
GCCTGTACACGAAGTGCATACTGCCGACGTCATCCTCGAAAGTATGGTTT
TCAATGCACAACGTGCCTGCACGGTGTACACGAATGCTGTTGTGTGCAAC
TGCAGCGTACTGCAAGTGCTGTTGGACCTATTGTTTCGCACAACAGCCTG
CACGTTACGCCGTCAAGTCGTACCTCAAGACATAAGGGTATGGTTTGTGA
GTACTCGCAGCTTAGCATTGAAACAAAGCATAAGAATAATGGTGCATCTG
AGGCCTCCGCAACCATCCCGACCGCTGTGCGATCGTCTGTGCCCATGAGC
TGCTACTGTTACCTGTATGCCCTGTGTGCAGAGGGCCATCATATACGTGT
GAGCTGGCGCCCGGCGGCATGAGCTACTAGTGGGGAAAAGTGTGGTTGTG
CAGACGCAGCAGAGGTTCAAGGTGCGCAAAACGCTCATGCCAACCACTTC
AGATACTGTTATGAAGTGGTTGATATACCAATGATCCCCCAGACCTTAAA
AGTTGACGAGAAGTTGTGTATCTGTGCGCAGTAATCAGATGGCACGCGCA
ACGCCTGAGATGTGACACAATTGCGTCATAGTGGAGACTGAGCACATCCA
CATCCTTTGCAGAAGCAGCCAAAGCTAATCACTTCAAGGCAGTTAACCTT
GCCACTGGGTGATGACTGCATGCGTGAAGTGAATTTTTTCTCTAGGAGTC
ATGAAGCGGGCCGCATTTACGTGCCTAACCCTAATTTTCCGCAGACAAAA
GGGTTGAGGTTGGTGGCGTGTACTTCTGATGATATCTTTTGTTGTTCAAT
TAATTCCCTCATAATTCCTTTTTGTTATGCTTTTATTTCTTAACGAACTT
GGAATTATTTGCCGTTTTTTTAAATTAAGATTGCAAACCCGTCAAAAAAC
GAACGTGAGAAAAGTACCAAAAACAAGTATTTTTTAAAAACTGAGATTAA
TAAAACAATTGTGAATATTCAAGACACTGAGCATTGCACCCAACTTTGTT
GTCTATTTCAAAAATAAGTCAAATTGCCGTTCAGAAGGTAATTTTGAAAT
ATTTTTAGAAGGTAATCCTTGGACAAAAAACTTGTACTGTTTACATCAAA
GTCAACACAACTGTTTAACCAGAATAATAATGACCCAAATGTGTCTTATT
CGAAGTTCTACTGTAGATATGGTGATACTGTTTGTTTCGTGGTCGATTGC
TGCAGCATTGGCGACCACGGTTGTTGGTGGACGGCACTTGCGGCTAACCA
TCCCTTGTCACCTAGAGCTCTACGATCTTTTGATTCGTTTTCATTCATGA
AAAATGCCGCACTCATAGTTTTTCATAGTTTAAAATATGGTTGCCAAAAG
AGGCACAAGCTCACTAACTAGAGGTATTTGATGATGAGCTCAGCATGCTG
CAGGGAAGGTGGTTGCAATATCTATCCTCGGTTGGGGTCATGCAAACATC
ACGTGCCAGTCAGATACGGTTTCTCTGCTACTTTAGCTTTGGTGCTAAAT
TCCCCCCCTCCCCCCCCTCCTCTCCCCCCCGCGGCCCCCTTCGCAGGATG
ACGTTGGCGACCCCCCTGGCCAACTCACCGTGAAGTTCAACATCACCATC
ATCAGCAAGGACAATGCGGGCGCCATCACCAGCTACGGCCAGGGCCCCGA
GTAGTGCATTGCTGCGCTGGTGGGCATGCGCGCGGCGAGGCAAACAAGCG
CAAAATAGCCGTGGCCTTGACGTGAGTACCCCTTGCCGACAAATATTTTG
AACCGTAAATATGCGTGATGTGCTTTTTTGCATACTGCAAAATATGATTT
CCTTGAATTCCAAATAGGAATGTACGTTTAAAGTGTGGCGCACACCACGA
CCACCCGTATTGCGACCTCAACGTAAGTGAGTCTCTATATATAGCGAGTG
TGTGTGTTTGTGTGTTTGTGAACGCGCGCTTGGTTGACAACAGCAAGGGC
TACGATATAAGAGCGGGTCTGTCCCGCCAGCCTCACAGCTCTTACACTGT
GACCGCCCCTTTTGTTGTGCTGGAGCTCATGTAGGGTTAGATGAAACCCT
TAGCAAATCATAACACTATCAATAGAGTTTCGAGTATTGACTAGGGTTAG
TGAGCTAGGATTCAAAGTTGGCAGAGAATTACGCCGTAAGCAAGGTGCGG
TTAGTACACCGCGCAGCATCACGCACCTCTTTGAGGGAGGGCACCAGCCT
CAAGAGGCGCGCAGCTTAACAAAAAAGCCATTGCTCAGCACAGTTGTGGT
GAGGTAAGGTCAGCACGTGTCGCCTGAGACGTGTTCATGCACTGATGCCT
GAGGATCCCCGCCCCGTAGGTATGGCACCAGGTGCTTGGTGCGTTCATGT
AGTACTACAAGTGGGCAGCGTTCTCAATGTGTGGCAGAAAATCGCTTGTC
GTGCAGGTGCTGCAGAATCCGCAGTTGGTCAGCGCGCATGAGCAGTGCGC
GTAGGCAAGCGCGCATGAGCAGTGCGCGTAGGCAAGCGCGCTGATGTTTA
CACTTCGACAAGTGACTCTCTCCCTGTCTGCAAGGCAGCCAGTCCCTTAA
ACTTTAAAGGCGGGGGGTCACGCAATGGCAACTAGCTTGAGCAGTCACCA
ATACCTCAACGACACCACTGCACCGCTCAGCATCAGTGGTGAAGCAGCGA
GCGGTAGGTGGGCACGATATAAGAGTGGTCAGCCCCGAGCAGCACCAAAC
TGCTCTTATATTAGCCAGATCCGTGTCCAGCCGACACACCGCTCTCATCC
TGTGACTGCTTTCATATCGAGCGCTCTTATATTGTAAACGTCACGGTACA
CGGCATGTACTTCAAGGTATGTATACGCACCGAGCGTCTACTGCAGCCCG
ATGAGGCGTACAAGCGCTACCACCCGCAGCCTCAATGGGAGCGCCCCTCT
ACACCTCATTATACATTACATAAATATGTGCGCACGAGCGCGTCAGGCAC
ACCAACTACGTATTTGGTGTCGAACTAGCTGTGTGCCCCTCCCGTGCTGT
GGCACGGCCAGCGCACCCACCGTATGCATATGTCAAGTTCTAGACCCATA
ATAGTATACCTACACAGCTTGTGGCCTTTCAAATACCTATCGTGTCAGCC
ATACCTGCCTCACTACCTACTTGCCCATCAGCATGCGCATTTCATCATAC
CTACCATGACTGACCCACTACCTACAGCATGGCTTCACACCAGCCGCAGC
GTTCGAGTCACTTCTGCCGACTACTCTGATTAAGCCCTGCTCTACATTCT
GTACGCTCTTGCTGCGTGCAGGCGTGCCCATGGTGGCGTCAGCAGTGTCC
AGGAGCTAGAACAAGCGTCACCACAGGAGCGCGCCTCATTAGTAACATGT
GTGGCGCTCATGCCAGCTTGGAGGGTTG

Coding sequence (CDS) from alignment at Contig_29:290401..295328+

>mRNA_9565 ID=mRNA_9565|Name=jgi.p|Trimin1|348654|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_29:290401..295328+ (Tribonema minus UTEX_B_3156 )
ATGCGGGCGCCATCACCAGCTACGGCCAGGGCCCCGAGTAGTGCATTGCT
GCGCTGGTGGGCATGCGCGCGGCGAGGCAAACAAGCGCAAAATAGCCGTG
GCCTTGACGCGTGCCCATGGTGGCGTCAGCAGTGTCCAGGAGCTAGAACA
AGCGTCACCACAGGAGCGCGCCTCATTAGTAACATGTGTGGCGCTCATGC
CAGCTTGGAGGGT