Trimin1|354608|estExt_Genemark1.C_Ctg_2880006 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354608
Unique Name	Trimin1\|354608\|estExt_Genemark1.C_Ctg_2880006
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	424

Homology

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BLAST of jgi.p|Trimin1|354608 vs. uniprot
Match: A0A835YXB9_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXB9_9STRA)

HSP 1 Score: 571 bits (1471), Expect = 3.270e-201
Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0

Query:    1 MAELYAVDPPGKIYWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDERNKQYGGVDLARQAPPMDSQLGFAGLAPQLSEVATTALTXXXXXXXXXXXXXXATQHTATNTLLPPHTPXXXXXXXXSDAHCPPRDREMDEFGRALPSKRQREPSVETAAAXXXXXXXXXXXXXXXXEXXXXXXXXXPAEPAPMDAGAEEVKELSPPEAAAAEDLSTGAKKRARDDDADADNDEAAQLSKRSKLDENDMLAKETEAAAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDXXXXXAAPEAE 423
            MAELYAVDPPGKIYWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDERNKQYGGVDLARQAPPMDSQLGFAGLAPQLSEVATTALTXXXXXXXXXXXXXXATQHTATNTLLPPHTPXXXXXXXXSDAHCPPRDREMDEFGRALPSKRQREPSVETAAAXXXXXXXXXXXXXXXXEXXXXXXXXXPAEPAPMDAGAEEVKELSPPEAAAAEDLSTGAKKRARDDDADADNDEAAQLSKRSKLDENDMLAKETEAAAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDXXXXXAAPEAE
Sbjct:    1 MAELYAVDPPGKIYWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDERNKQYGGVDLARQAPPMDSQLGFAGLAPQLSEVATTALTXXXXXXXXXXXXXXATQHTATNTLLPPHTPXXXXXXXXSDAHCPPRDREMDEFGRALPSKRQREPSVETAAAXXXXXXXXXXXXXXXXEXXXXXXXXXPAEPAPMDAGAEEVKELSPPEAAAAEDLSTGAKKRARDDDADADNDEAAQLSKRSKLDENDMLAKETEAAAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDXXXXXAAPEAE 423

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BLAST of jgi.p|Trimin1|354608 vs. uniprot
Match: A0A0F7RWA3_9BASI (Nuclear cap-binding protein subunit 2 (Fragment) n=1 Tax=Sporisorium scitamineum TaxID=49012 RepID=A0A0F7RWA3_9BASI)

HSP 1 Score: 135 bits (341), Expect = 1.830e-34
Identity = 79/171 (46.20%), Postives = 105/171 (61.40%), Query Frame = 0

Query:    4 LYAVDPPGKIYWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDERNKQY 174
            L  +D P   Y D ++  + EQ + AL+ + TLY+GNLSFYTTE QI E+FS+         +A L S  G + R+IMGLDRN +TPCGFAFVE+    +A+ ++R ++                      GT LDERIIR +LDPG+++GRQYGRG SGGQVRDE  K+Y
Sbjct:    5 LQPLDAPSP-YRDSRSDTTKEQQLQALRKTATLYLGNLSFYTTEEQIYEVFSR---------VASL-SSGGGIKRIIMGLDRNTKTPCGFAFVEFYTHAEAVESMRYVN----------------------GTKLDERIIRCDLDPGYKEGRQYGRGRSGGQVRDEYRKEY 142

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BLAST of jgi.p|Trimin1|354608 vs. uniprot
Match: A0A1W0A133_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A133_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.320e-34
Identity = 82/173 (47.40%), Postives = 98/173 (56.65%), Query Frame = 0

Query:    3 ELYA-----VDPPGKIYWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDER 170
            ELYA     V P  K YWDR+TYAS E+   A+K S TLY+GNLSF+T+E QI ELFS                  G +  VIMGLDR ++TPCGF FVEY +   A A    IS                       T LD+R+IR ELD GF++GRQYGRGT+GGQVRD+R
Sbjct:    2 ELYASLTEGVGPKKKEYWDRQTYASLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVV----------------GPVRAVIMGLDRIKKTPCGFCFVEYFNKDHAQACANFIS----------------------STKLDQRVIRCELDGGFREGRQYGRGTTGGQVRDDR 136

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BLAST of jgi.p|Trimin1|354608 vs. uniprot
Match: A0A0N7L479_PLAHL (Nuclear cap-binding protein subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L479_PLAHL)

HSP 1 Score: 137 bits (344), Expect = 3.370e-34
Identity = 79/180 (43.89%), Postives = 103/180 (57.22%), Query Frame = 0

Query:    1 MAELYAV----------DPPGKIYWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDER 170
            MAELYA            P  + YWDRKTY+SF++   +++ S TLY+GNLSF+T+EAQI ELFS+                 G + RVIMGLDR ++TPCGF FVEY  + +A A  + +S                       T LD R++R E+D GF++GRQYGRG SGGQVRD+R
Sbjct:    1 MAELYAEVADEERRLERGPSQRQYWDRKTYSSFDEQQRSIERSSTLYVGNLSFFTSEAQIYELFSRV----------------GYVKRVIMGLDRFKKTPCGFCFVEYSKNVEAKACAQFLSE----------------------TKLDNRVVRCEMDGGFREGRQYGRGLSGGQVRDDR 142

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BLAST of jgi.p|Trimin1|354608 vs. uniprot
Match: A0A8K0NMJ6_9TREE (Uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0NMJ6_9TREE)

HSP 1 Score: 135 bits (341), Expect = 5.950e-34
Identity = 79/161 (49.07%), Postives = 95/161 (59.01%), Query Frame = 0

Query:   14 YWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDERNKQY 174
            Y D K   S E     L  S TLY+GNLSFYTTEAQI E+FS+  +           S+ G + R+IMGLDRN +TPCGFAFVEY    +ALA++R IS                      GT LDERIIR +LDPG+++GRQ+GRG SGGQVRDE    Y
Sbjct:   14 YKDNKNRVSREDERNQLANSTTLYVGNLSFYTTEAQIYEIFSQCAEP----------SEGGGIKRIIMGLDRNNKTPCGFAFVEYYLHSEALASMRYIS----------------------GTKLDERIIRCDLDPGYKEGRQFGRGKSGGQVRDEYRDDY 142

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BLAST of jgi.p|Trimin1|354608 vs. uniprot
Match: A0A1E4TCJ9_9ASCO (Nuclear cap-binding protein subunit 2 n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TCJ9_9ASCO)

HSP 1 Score: 133 bits (334), Expect = 1.090e-33
Identity = 80/174 (45.98%), Postives = 96/174 (55.17%), Query Frame = 0

Query:    1 MAELYAVDPPGKIYWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDERNKQY 174
            +  +  +D P   Y  RK     E     L+ SRTLY+GNLSFYT+E QIAELF +A                GE+ R+IMGLDR  +TPCGF FVEY     AL  ++ IS                      GT LDERI+RA+LDPGF+DGRQYGRGT+GGQVRDE    Y
Sbjct:    5 LTSVKRIDGPS-AYMIRKCSRQGESAYKILQDSRTLYVGNLSFYTSEEQIAELFKEA----------------GEIKRIIMGLDRFEKTPCGFCFVEYFDHESALRCLKYIS----------------------GTKLDERIVRADLDPGFEDGRQYGRGTTGGQVRDELRVDY 139

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BLAST of jgi.p|Trimin1|354608 vs. uniprot
Match: A0A1X2HUM5_SYNRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HUM5_SYNRA)

HSP 1 Score: 134 bits (338), Expect = 1.490e-33
Identity = 76/161 (47.20%), Postives = 93/161 (57.76%), Query Frame = 0

Query:   14 YWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDERNKQY 174
            Y D +   + +Q    L  + TLY+GNLSFYTTE QI ELFSKA                GE+ R+IMGLDRN++TPCGF FVEY H  D L  ++ ++                      GT LDERIIR +LDPGF++GRQYGRG SGGQVRDE   +Y
Sbjct:   15 YRDNQYQGTADQFDNELSQTTTLYVGNLSFYTTEEQIYELFSKA----------------GEIKRIIMGLDRNQKTPCGFCFVEYYHRADTLDCMKYVN----------------------GTKLDERIIRCDLDPGFKEGRQYGRGHSGGQVRDEYRTEY 137

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BLAST of jgi.p|Trimin1|354608 vs. uniprot
Match: A0A1Y2BDA5_9TREE (Nuclear cap-binding protein subunit 2 n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2BDA5_9TREE)

HSP 1 Score: 135 bits (340), Expect = 1.570e-33
Identity = 79/174 (45.40%), Postives = 102/174 (58.62%), Query Frame = 0

Query:    1 MAELYAVDPPGKIYWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDERNKQY 174
            MA++ A+      Y D ++    E     L  S TLY+GNLSFYTTEAQ+ ELFSK  + E            G + R+IMGLDRN++TPCGFAFVEY    +A+A +R IS                      GT LDER+IR +LDPG+++GRQ+GRG SGGQVRDE  ++Y
Sbjct:   21 MAQVVALLDQPSSYRDNRSELDRETERRLLALSSTLYVGNLSFYTTEAQMYELFSKCARPEY----------GGGIKRIIMGLDRNQKTPCGFAFVEYYLHTEAVACMRYIS----------------------GTKLDERVIRCDLDPGYKEGRQFGRGKSGGQVRDEFRQEY 162

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BLAST of jgi.p|Trimin1|354608 vs. uniprot
Match: A0A127Z7I0_9BASI (Nuclear cap-binding protein subunit 2 n=2 Tax=Sporisorium scitamineum TaxID=49012 RepID=A0A127Z7I0_9BASI)

HSP 1 Score: 135 bits (341), Expect = 1.610e-33
Identity = 79/171 (46.20%), Postives = 105/171 (61.40%), Query Frame = 0

Query:    4 LYAVDPPGKIYWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDERNKQY 174
            L  +D P   Y D ++  + EQ + AL+ + TLY+GNLSFYTTE QI E+FS+         +A L S  G + R+IMGLDRN +TPCGFAFVE+    +A+ ++R ++                      GT LDERIIR +LDPG+++GRQYGRG SGGQVRDE  K+Y
Sbjct:    5 LQPLDAPSP-YRDSRSDTTKEQQLQALRKTATLYLGNLSFYTTEEQIYEVFSR---------VASL-SSGGGIKRIIMGLDRNTKTPCGFAFVEFYTHAEAVESMRYVN----------------------GTKLDERIIRCDLDPGYKEGRQYGRGRSGGQVRDEYRKEY 142

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BLAST of jgi.p|Trimin1|354608 vs. uniprot
Match: F0WMQ1_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMQ1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.790e-33
Identity = 76/157 (48.41%), Postives = 91/157 (57.96%), Query Frame = 0

Query:   14 YWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQIAELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRHSCDALAAIRDISXXXXXXXXXXXXXXXXXXXXXXGTCLDERIIRAELDPGFQDGRQYGRGTSGGQVRDER 170
            YWDRKTY S E+  +A+K S TLYIGNLSFYT+E Q+ ELFS+                 G + RVIMGLDR ++TPCGF FVEY    +ALA    +S                      GT LD R+IR E+D GF  GRQ+GRG SGGQVRD+R
Sbjct:   23 YWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRV----------------GTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLS----------------------GTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQVRDDR 141

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354608 vs. uniprot

BLAST of jgi.p|Trimin1|354608 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YXB9_9STRA	3.270e-201	100.00	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A0F7RWA3_9BASI	1.830e-34	46.20	Nuclear cap-binding protein subunit 2 (Fragment) n...	[more]
A0A1W0A133_9STRA	3.320e-34	47.40	Nuclear cap-binding protein subunit 2 n=1 Tax=Thra...	[more]
A0A0N7L479_PLAHL	3.370e-34	43.89	Nuclear cap-binding protein subunit 2 n=1 Tax=Plas...	[more]
A0A8K0NMJ6_9TREE	5.950e-34	49.07	Uncharacterized protein n=1 Tax=Filobasidium flori...	[more]
A0A1E4TCJ9_9ASCO	1.090e-33	45.98	Nuclear cap-binding protein subunit 2 n=1 Tax=Tort...	[more]
A0A1X2HUM5_SYNRA	1.490e-33	47.20	Nuclear cap-binding protein subunit 2 n=1 Tax=Sync...	[more]
A0A1Y2BDA5_9TREE	1.570e-33	45.40	Nuclear cap-binding protein subunit 2 n=1 Tax=Naem...	[more]
A0A127Z7I0_9BASI	1.610e-33	46.20	Nuclear cap-binding protein subunit 2 n=2 Tax=Spor...	[more]
F0WMQ1_9STRA	1.790e-33	48.41	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..120 e-value: 4.4E-7 score: 39.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 65..109 e-value: 2.2E-4 score: 21.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..150 score: 12.287449
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 14..180 e-value: 2.4E-23 score: 84.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..372
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..270
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 310..423
None	No IPR available	PANTHER	PTHR18847:SF0	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2	coord: 125..174
None	No IPR available	PANTHER	PTHR18847:SF0	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2	coord: 11..58 coord: 65..116
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 125..174 coord: 11..58
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 65..116
IPR034148	NCBP2, RNA recognition motif	CDD	cd12240	RRM_NCBP2	coord: 36..151 e-value: 1.55736E-32 score: 115.721
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 29..109

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_288	contig	Contig_288:49209..60063 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354608	mRNA_18800	Tribonema minus UTEX_B_3156	mRNA	Contig_288 48706..60063 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354608|estExt_Genemark1.C_Ctg_2880006 ID=Trimin1|354608|estExt_Genemark1.C_Ctg_2880006|Name=jgi.p|Trimin1|354608|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=424bp
MAELYAVDPPGKIYWDRKTYASFEQHVAALKGSRTLYIGNLSFYTTEAQI
AELFSKAQKAELFSKIAELFSKTGELLRVIMGLDRNRRTPCGFAFVEYRH
SCDALAAIRDISCDALAAIRDVSCDALAAMRDVSGTCLDERIIRAELDPG
FQDGRQYGRGTSGGQVRDERNKQYGGVDLARQAPPMDSQLGFAGLAPQLS
EVATTALTTATSTAAAAAAAAAATQHTATNTLLPPHTPAAATKWTSSDAH
CPPRDREMDEFGRALPSKRQREPSVETAAAAASPPAAAAAAAAAAPESAA
AVAAAAPAEPAPMDAGAEEVKELSPPEAAAAEDLSTGAKKRARDDDADAD
NDEAAQLSKRSKLDENDMLAKETEAAAADTAAAAATAAAPTAAAATAAAA
TAAAAAADAAPDAAAAAAAPEAE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR027157	NCBP2
IPR034148	NCBP2_RRM
IPR035979	RBD_domain_sf