mRNA_18486 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835Z252_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z252_9STRA) HSP 1 Score: 318 bits (815), Expect = 2.130e-110 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 Query: 1 RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438 RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS Sbjct: 1 RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 146
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA) HSP 1 Score: 159 bits (402), Expect = 2.090e-42 Identity = 75/149 (50.34%), Postives = 93/149 (62.42%), Query Frame = 1 Query: 1 RCPTAGVTYNVQYQHLG---DAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438 RCPT + + Y+ +G AAAP V + TI V PS R AA DLP W PCRPAYL D+ TLP + + LDVR+ LN F GP E F +G+AQPW+V G D+HP H H+N M G GNQW+Q+PGWN GDW+DT+S Sbjct: 815 RCPTQWEHHILTYERIGAPPSAAAPRVAHPL-TIVVAPSARDAAPDLPLWSPCRPAYLTDLYTLPPTSLAKLYPLDVRESLNGAVFVGPDEYFTELPIGVAQPWSVSGDDIHPLHVHVNKMQWGADTAGNQWDQVPGWNAPGDWVDTLS 962
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA) HSP 1 Score: 153 bits (386), Expect = 2.950e-40 Identity = 72/147 (48.98%), Postives = 87/147 (59.18%), Query Frame = 1 Query: 1 RCPTAGVTYNVQYQHLGDAAAP-EVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438 +C AGV +NV Y H+GD A P IATITV P +RP AD LP W PCRP YL D +P+ G F L VRD LN +KFT P + + W + GSD HP H H++HM LG VG NQW P WN+ GDW+D+IS Sbjct: 688 KCFVAGVVHNVAYAHVGDVGAEVAAAPTIATITVTPFLRPPADPLPLWAPCRPGYLTDARKVPRRLRGPPFDLTVRDALNGQKFTSPDTYIRTMSNRNLEAWQITGSDKHPLHIHVDHMQLGAVGVTNQWPGAPNWNMPGDWVDSIS 834
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA) HSP 1 Score: 152 bits (383), Expect = 7.370e-40 Identity = 75/148 (50.68%), Postives = 93/148 (62.84%), Query Frame = 1 Query: 1 RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYL-VDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGE-VGDGNQWNQIPGWNVAGDWIDTIS 438 RCPTAG + + H+ D AAPE + TITV PS+R AADDLP W PCRPAYL DI+ LP+ + L+VR+G+ + F+ LG AQ WT+ GSDLHPFH H+NHM LG +G N W +PGW GD+IDTIS Sbjct: 559 RCPTAGKAHTLAMMHINDPAAPEAPVPLVTITVVPSLRDAADDLPAWGPCRPAYLPADISALPEV-VPKTLALEVREGVGGQVFSSVDNYVTEIGLGFAQQWTIQGSDLHPFHIHVNHMQLGPTIGPANNWPDVPGWFQPGDYIDTIS 705
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835YXW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW7_9STRA) HSP 1 Score: 141 bits (355), Expect = 3.380e-36 Identity = 63/148 (42.57%), Postives = 92/148 (62.16%), Query Frame = 1 Query: 1 RCPTAGVTYNVQYQHLGDA--AAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438 RC AG + ++Y + +A A PEV IAT+ V+PS RP A DLP W PCRPAYL D+T L +G + +++R +N +F+GP++ H L + + W V G+DLHP H H+NH +G+V NQW + P W GD++D++S Sbjct: 222 RCAGAGAKHEIRYAQVNNALRADPEV---IATLEVSPSTRPPAADLPQWSPCRPAYLQDLTGLTPQQLGNAYPIELRQTINNAQFSGPEDYMHELELAVPEQWLVTGTDLHPLHVHVNHFQIGKVTAANQWAEAPEWLQEGDYMDSLS 366
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835Z8B6_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B6_9STRA) HSP 1 Score: 139 bits (350), Expect = 4.720e-36 Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 1 Query: 1 RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438 RC AGV + ++Y + ++ P+ VI T+TV P RP A DLP+W PCRPAYL D+T L +GA + L++R +N +F GP H TLG+ + W V G+D HP H HI G V NQW+ P W V GDW+D++S Sbjct: 307 RCADAGVEHEIRYTQVNNSLRPDAE-VIGTVTVTPDARPPAPDLPEWGPCRPAYLKDLTVLTPEQLGAAYPLELRQTINGAQFEGPDVIMHELTLGVPEQWLVTGTDQHPLHVHI-----GGVSAENQWDDAPDWLVVGDWMDSLS 446
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835Z7H4_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H4_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.300e-25 Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1 Query: 25 YNVQYQHLGDAAAPE-----VVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMG--ADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438 ++++Y+H+ + A E ++ IA I V S RP A +LP W+PCRPAYL + P + A + DG+ P TLG W V S LHP H H+NHM LG + NQW+ +PGW+VAGDWIDT++ Sbjct: 306 HHIRYRHIKHSGAAELPDTDIITTIANIVVYSSARPVAPNLPVWQPCRPAYLTKLAA-PSGNPRPVAAIAVAALDGI-------------PLTLGSTVQWDVSFSFLHPLHTHVNHMQLGPITAANQWSSLPGWHVAGDWIDTLA 436
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835YUJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ5_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 9.850e-19 Identity = 59/160 (36.88%), Postives = 80/160 (50.00%), Query Frame = 1 Query: 1 RCPTAGVTYNVQYQHLGDAAAPEVV------PVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEK-----FTGPKENFHPFTLGIAQP--WTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPG-WNVAGDWIDTIS 438 RCP AG+ VQ + + P + P IATITV + A LP KPCRP YL+DI + D + V DG + +TG + T+ + QP W + GS HPFH H+NHMML D W+Q+ W++ GDW+D+IS Sbjct: 602 RCPAAGMHKIVQQRINDPSCLPGCLKDTYQHPTIATITVGAAAGAPAPALPKLKPCRPGYLMDIVPTAATEQ-VDLTIRV-DGFSVNNLPGALYTGVADAAPMTTMTLGQPYQWVIDGSANHPFHAHVNHMMLSV--DIQPWDQVQANWHMPGDWLDSIS 757
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835Z1F3_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F3_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.510e-15 Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 280 TLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438 TLG W V S LHP H H+NHM LG V NQW+ +PGW+VAGDWIDT++ Sbjct: 2 TLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLA 54 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18486 ID=mRNA_18486|Name=jgi.p|Trimin1|133309|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_272:19254..20989+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGATGCCCTACAGCAGGTGTGACCTACAACGTGCAGTACCAGCACCTTGGback to top protein sequence of jgi.p|Trimin1|133309 >Trimin1|133309|gw1.272.2.1 ID=Trimin1|133309|gw1.272.2.1|Name=jgi.p|Trimin1|133309|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCback to top mRNA from alignment at Contig_272:19254..20989+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18486 ID=mRNA_18486|Name=jgi.p|Trimin1|133309|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1736bp|location=Sequence derived from alignment at Contig_272:19254..20989+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_272:19254..20989+ >mRNA_18486 ID=mRNA_18486|Name=jgi.p|Trimin1|133309|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_272:19254..20989+ (Tribonema minus UTEX_B_3156 )back to top |