Trimin1|354560|estExt_Genemark1.C_Ctg_2710006 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354560
Unique NameTrimin1|354560|estExt_Genemark1.C_Ctg_2710006
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length738
Homology
BLAST of jgi.p|Trimin1|354560 vs. uniprot
Match: A0A835YZK0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZK0_9STRA)

HSP 1 Score: 1341 bits (3470), Expect = 0.000e+0
Identity = 737/737 (100.00%), Postives = 737/737 (100.00%), Query Frame = 0
Query:    1 MRLVASPKAVQMHYIDRLVSMATAFAFGANVYMEDIEFLSQLLEYMDKQQAKAGAEGRHDWSTAPLIILSTVVAAQAQVYLADFFQRAGGEGLYAAAAAEARAEPPPLGQLAHDNSRQRQVVPYQWSMLEVLRVESTEGLDRLFSLQVLDLGHNLLVDFEEVSRLGSLPCLRQVTLQGNPLARRSKYRVTVRLAPMASTPASSTATSTVNQSSLGGSTFGTPATVTSDTTFDVTALPSLPAAPRWTARRPAKPAQIEDMAPCSGSALAYTSALGASVLAEHEDYEEPLGQVPQLSGLDLQQXXXXXXXXXXXXXXXXXXXXXXAVLWSLRHRSSSGAKSPLPLPARPHKAASSGPALQHYYGSPAYAGLLVLDHLQLYFKEHVFGSHAGAPYLHTMYHGPPAATASAAADATQPEPESFIALFRDTIVPGAASGKAAHMREVLTRPALRRDANGAPRGNAAGEVPVLVVITSHRVHFVTEDGLADQMFAEAPRPTSLVSVLLRDLREAALGLALQKLRLVFEHVFDAAADTGGSRHHXXSESGTASPFTLQVTVLTRSRSRTHALITALEPAAADARARAGLPALAVTNEDAPVMEVLAPLTGGRESALALYQLVLQRWPLRPWVAAPRSLLATASELVLCDESHDSSASDLQPFVVDRGRLADVTSVELLSRRGGGCLQFSVKLRAQGVLQSKRQWVLQCRTSSDADRVVAELRRLSKAQRDGKGVVATALSDLLL 737
            MRLVASPKAVQMHYIDRLVSMATAFAFGANVYMEDIEFLSQLLEYMDKQQAKAGAEGRHDWSTAPLIILSTVVAAQAQVYLADFFQRAGGEGLYAAAAAEARAEPPPLGQLAHDNSRQRQVVPYQWSMLEVLRVESTEGLDRLFSLQVLDLGHNLLVDFEEVSRLGSLPCLRQVTLQGNPLARRSKYRVTVRLAPMASTPASSTATSTVNQSSLGGSTFGTPATVTSDTTFDVTALPSLPAAPRWTARRPAKPAQIEDMAPCSGSALAYTSALGASVLAEHEDYEEPLGQVPQLSGLDLQQXXXXXXXXXXXXXXXXXXXXXXAVLWSLRHRSSSGAKSPLPLPARPHKAASSGPALQHYYGSPAYAGLLVLDHLQLYFKEHVFGSHAGAPYLHTMYHGPPAATASAAADATQPEPESFIALFRDTIVPGAASGKAAHMREVLTRPALRRDANGAPRGNAAGEVPVLVVITSHRVHFVTEDGLADQMFAEAPRPTSLVSVLLRDLREAALGLALQKLRLVFEHVFDAAADTGGSRHHXXSESGTASPFTLQVTVLTRSRSRTHALITALEPAAADARARAGLPALAVTNEDAPVMEVLAPLTGGRESALALYQLVLQRWPLRPWVAAPRSLLATASELVLCDESHDSSASDLQPFVVDRGRLADVTSVELLSRRGGGCLQFSVKLRAQGVLQSKRQWVLQCRTSSDADRVVAELRRLSKAQRDGKGVVATALSDLLL
Sbjct:    1 MRLVASPKAVQMHYIDRLVSMATAFAFGANVYMEDIEFLSQLLEYMDKQQAKAGAEGRHDWSTAPLIILSTVVAAQAQVYLADFFQRAGGEGLYAAAAAEARAEPPPLGQLAHDNSRQRQVVPYQWSMLEVLRVESTEGLDRLFSLQVLDLGHNLLVDFEEVSRLGSLPCLRQVTLQGNPLARRSKYRVTVRLAPMASTPASSTATSTVNQSSLGGSTFGTPATVTSDTTFDVTALPSLPAAPRWTARRPAKPAQIEDMAPCSGSALAYTSALGASVLAEHEDYEEPLGQVPQLSGLDLQQXXXXXXXXXXXXXXXXXXXXXXAVLWSLRHRSSSGAKSPLPLPARPHKAASSGPALQHYYGSPAYAGLLVLDHLQLYFKEHVFGSHAGAPYLHTMYHGPPAATASAAADATQPEPESFIALFRDTIVPGAASGKAAHMREVLTRPALRRDANGAPRGNAAGEVPVLVVITSHRVHFVTEDGLADQMFAEAPRPTSLVSVLLRDLREAALGLALQKLRLVFEHVFDAAADTGGSRHHXXSESGTASPFTLQVTVLTRSRSRTHALITALEPAAADARARAGLPALAVTNEDAPVMEVLAPLTGGRESALALYQLVLQRWPLRPWVAAPRSLLATASELVLCDESHDSSASDLQPFVVDRGRLADVTSVELLSRRGGGCLQFSVKLRAQGVLQSKRQWVLQCRTSSDADRVVAELRRLSKAQRDGKGVVATALSDLLL 737          
BLAST of jgi.p|Trimin1|354560 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.990e-9
Identity = 55/174 (31.61%), Postives = 80/174 (45.98%), Query Frame = 0
Query:  583 PALAVTNEDAPVMEVLAPLTGGRESALALYQLVLQRWPLRPWVAAPRSLLATASELVLCDESHD---SSASD---------------------LQPFVVDRG--------RLADVTSVEL-----LSRRGGGCLQFSVKLRAQGVLQSKRQWVLQCRTSSDADRVVAELRRLSK 719
            P L+ T   + V+E    + GG E  + ++QL++QRW LRPWV  PR+L+AT  +L L DE H    SS+S                      L   V D G         ++ V SV+L     + +      Q  V L+ +     +RQW LQCRT   A+ V + + RLS+
Sbjct: 1698 PLLSPTVSSSNVVETPPSVGGGHEGTVVVFQLLVQRWELRPWVVVPRTLVATKEKLALMDEDHSRVSSSSSSGKNSNSVFGGLAGEICEDGRRLSWTVADGGDGGGSELKEMSCVDSVDLGDVIDVRQEKSAPEQVVVDLKGERAFNPRRQWRLQCRTRGSAEGVASAVLRLSR 1871          
BLAST of jgi.p|Trimin1|354560 vs. uniprot
Match: A0A835YXQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXQ6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.820e-8
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 0
Query:  134 VESTEGLDRLFSLQVLDLGHNLLVDFEEVSRLGSLPCLRQVTLQGNPLARRSKYR 188
            + +TEGL+RL +L+VLDL HN + D E+V+RLG LPCL  +TL+GNP+AR+   R
Sbjct:  337 IRTTEGLERLLALEVLDLEHNRIFDDEDVARLGLLPCLAHLTLRGNPVARQKGNR 391          
BLAST of jgi.p|Trimin1|354560 vs. uniprot
Match: A0A5B8MHU3_9CHLO (Uncharacterized protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MHU3_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 7.840e-7
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0
Query:  129 LEVLRVESTEGLDRLFSLQVLDLGHNLLVDFEEVSRLGSLPCLRQVTLQGNPLARRSKYRVTV 191
            L+   + STEG+D+L+SL+VLDL  NL+  F EVSRLGSLP L  + L  NP++  S YR  V
Sbjct:  268 LKCXXLTSTEGIDKLYSLEVLDLSGNLISKFSEVSRLGSLPYLESLWLAENPISYASGYRTKV 330          
BLAST of jgi.p|Trimin1|354560 vs. uniprot
Match: A0A7S3CDR5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CDR5_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 1.510e-5
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 0
Query:  136 STEGLDRLFSLQVLDLGHNLLVDFEEVSRLGSLPCLRQVTLQGNPLARRSKYRVTV 191
            ST+G+D+L+SL+VLDL  NL+  F EVSRL +LP L  + L  NP++    YR TV
Sbjct:  274 STDGIDKLYSLEVLDLSGNLISKFAEVSRLSALPFLEALWLADNPISYAKGYRTTV 329          
BLAST of jgi.p|Trimin1|354560 vs. uniprot
Match: A0A1Y1IEH6_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEH6_KLENI)

HSP 1 Score: 58.5 bits (140), Expect = 4.520e-5
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 0
Query:  134 VESTEGLDRLFSLQVLDLGHNLLVDFEEVSRLGSLPCLRQVTLQGNPLARRSKYRVTV 191
            + S  GL++L++++ LDL HN++    EV+RLG LP L ++ L+GNP+  R  YR  V
Sbjct:  247 IHSLAGLEKLYAIEALDLAHNVIGSLSEVARLGQLPSLTRLWLEGNPIELRRNYRAEV 304          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354560 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YZK0_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K372_9PHAE2.990e-931.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YXQ6_9STRA2.820e-856.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5B8MHU3_9CHLO7.840e-752.38Uncharacterized protein n=2 Tax=Chloropicon primus... [more]
A0A7S3CDR5_9CHLO1.510e-551.79Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A1Y1IEH6_KLENI4.520e-543.10Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 128..199
e-value: 7.9E-10
score: 39.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 284..320
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..313
NoneNo IPR availablePANTHERPTHR15454NISCHARIN RELATEDcoord: 134..548
NoneNo IPR availablePANTHERPTHR15454:SF7SERINE/THREONINE-PROTEIN KINASE 11-INTERACTING PROTEINcoord: 134..548
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 134..192
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 145..166
score: 7.966078

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_271contigContig_271:20883..30344 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354560mRNA_18342Tribonema minus UTEX_B_3156 mRNAContig_271 20883..30506 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354560|estExt_Genemark1.C_Ctg_2710006 ID=Trimin1|354560|estExt_Genemark1.C_Ctg_2710006|Name=jgi.p|Trimin1|354560|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=738bp
MRLVASPKAVQMHYIDRLVSMATAFAFGANVYMEDIEFLSQLLEYMDKQQ
AKAGAEGRHDWSTAPLIILSTVVAAQAQVYLADFFQRAGGEGLYAAAAAE
ARAEPPPLGQLAHDNSRQRQVVPYQWSMLEVLRVESTEGLDRLFSLQVLD
LGHNLLVDFEEVSRLGSLPCLRQVTLQGNPLARRSKYRVTVRLAPMASTP
ASSTATSTVNQSSLGGSTFGTPATVTSDTTFDVTALPSLPAAPRWTARRP
AKPAQIEDMAPCSGSALAYTSALGASVLAEHEDYEEPLGQVPQLSGLDLQ
QQQQQQQLEHSTSADSESDMEVEAVLWSLRHRSSSGAKSPLPLPARPHKA
ASSGPALQHYYGSPAYAGLLVLDHLQLYFKEHVFGSHAGAPYLHTMYHGP
PAATASAAADATQPEPESFIALFRDTIVPGAASGKAAHMREVLTRPALRR
DANGAPRGNAAGEVPVLVVITSHRVHFVTEDGLADQMFAEAPRPTSLVSV
LLRDLREAALGLALQKLRLVFEHVFDAAADTGGSRHHHHSESGTASPFTL
QVTVLTRSRSRTHALITALEPAAADARARAGLPALAVTNEDAPVMEVLAP
LTGGRESALALYQLVLQRWPLRPWVAAPRSLLATASELVLCDESHDSSAS
DLQPFVVDRGRLADVTSVELLSRRGGGCLQFSVKLRAQGVLQSKRQWVLQ
CRTSSDADRVVAELRRLSKAQRDGKGVVATALSDLLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt