mRNA_9513 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173803
Unique NamemRNA_9513
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173803 vs. uniprot
Match: A0A835ZHD2_9STRA (Lipase_3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHD2_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.610e-54
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPCCHEAIWGGGCGTGQASGQVHGVLCGSQFPTVLLKHA 231
            LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPCCHEAIWGGGCGTGQASGQVHGVLCGSQFPTVLLKHA
Sbjct:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPCCHEAIWGGGCGTGQASGQVHGVLCGSQFPTVLLKHA 77
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BLAST of jgi.p|Trimin1|173803 vs. uniprot
Match: A0A6H5KHF8_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.340e-11
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPCCHEAIWGGGC 153
            LYT G PR GD  F +  N+ VGTAYR+VH++D+VPHL+ CCH   W G C
Sbjct:  337 LYTLGEPRAGDGVFADGINEHVGTAYRIVHDKDLVPHLSLCCHG--WLGKC 385
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BLAST of jgi.p|Trimin1|173803 vs. uniprot
Match: D7FZR8_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.840e-11
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPCCHEAIWGGGC 153
            LYT G PR GD  F +  N+ VGTAYR+VH++D+VPHL+ CCH   W G C
Sbjct:  345 LYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHG--WLGKC 393
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BLAST of jgi.p|Trimin1|173803 vs. uniprot
Match: A0A7S4EY64_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EY64_CHRCT)

HSP 1 Score: 59.7 bits (143), Expect = 1.130e-8
Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPCCHEAIWGGGCGTGQA 168
            LYT+G PR GD  F +  N  V  AYR+VH RDIVPHL PC        GC  G+A
Sbjct:  188 LYTYGMPRVGDFEFAKALNARVANAYRIVHARDIVPHLPPCVGLL----GCSQGKA 239
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BLAST of jgi.p|Trimin1|173803 vs. uniprot
Match: A0A7S4BC24_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BC24_CHRCT)

HSP 1 Score: 59.7 bits (143), Expect = 1.260e-8
Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPCCHEAIWGGGCGTGQA 168
            LYT+G PR GD  F +  N  V  AYR+VH RDIVPHL PC        GC  G+A
Sbjct:  257 LYTYGMPRVGDFEFAKALNARVANAYRIVHARDIVPHLPPCVGLL----GCSQGKA 308
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BLAST of jgi.p|Trimin1|173803 vs. uniprot
Match: Q23K77_TETTS (Lipase family protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q23K77_TETTS)

HSP 1 Score: 56.2 bits (134), Expect = 1.780e-7
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHL 114
            LYTFG PR G+  F + FN+ +G  YR++HNRD++PH+
Sbjct:  187 LYTFGQPRVGNKKFAKYFNERIGNIYRLIHNRDLIPHV 224
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BLAST of jgi.p|Trimin1|173803 vs. uniprot
Match: A0A7S2HQX8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQX8_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.430e-7
Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 1 
Query:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPCCHEA 135
            LYTFG PR G  +F E    +   AYRVVH +D++ HL PCC  A
Sbjct:  169 LYTFGQPRVGGYSFSESIGDATAKAYRVVHKKDMIAHLPPCCAVA 213
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BLAST of jgi.p|Trimin1|173803 vs. uniprot
Match: L8GG45_ACACA (Lipase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GG45_ACACA)

HSP 1 Score: 55.8 bits (133), Expect = 2.610e-7
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPCCHEAIWGGGC 153
            +YTFG+PR GD  F + FN     ++RVVH +DIV H+APCC      G C
Sbjct:  167 VYTFGSPRVGDTGFAKAFNSLGIESWRVVHWKDIVVHMAPCCSGFFGLGPC 217
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BLAST of jgi.p|Trimin1|173803 vs. uniprot
Match: A0A0G4IKR8_PLABS (Lipase_3 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IKR8_PLABS)

HSP 1 Score: 54.7 bits (130), Expect = 6.740e-7
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPC 123
            +YT+GTPR G+ AF  L  + V  ++RVVH+ D+VPHLAPC
Sbjct:  187 VYTYGTPRTGNYAFSVLHRRLVPNSWRVVHDCDMVPHLAPC 227
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BLAST of jgi.p|Trimin1|173803 vs. uniprot
Match: A0A833V3Y0_9POAL (Lipase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833V3Y0_9POAL)

HSP 1 Score: 53.9 bits (128), Expect = 1.340e-6
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAP 120
            L TFG PR G+AAF   F + +   +R+VHNRDIVPHL P
Sbjct:  198 LLTFGQPRIGNAAFASCFYKYIPNTFRIVHNRDIVPHLPP 237
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173803 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHD2_9STRA2.610e-54100.00Lipase_3 domain-containing protein n=1 Tax=Tribone... [more]
A0A6H5KHF8_9PHAE1.340e-1156.86Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
D7FZR8_ECTSI1.840e-1156.86Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S4EY64_CHRCT1.130e-851.79Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4BC24_CHRCT1.260e-851.79Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
Q23K77_TETTS1.780e-752.63Lipase family protein n=1 Tax=Tetrahymena thermoph... [more]
A0A7S2HQX8_9STRA2.430e-751.11Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
L8GG45_ACACA2.610e-749.02Lipase, putative n=1 Tax=Acanthamoeba castellanii ... [more]
A0A0G4IKR8_PLABS6.740e-756.10Lipase_3 domain-containing protein n=1 Tax=Plasmod... [more]
A0A833V3Y0_9POAL1.340e-657.50Lipase n=1 Tax=Carex littledalei TaxID=544730 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:334563..334796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173803|e_gw1.106.2.1
Descriptionphospholipase A1 activity
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota
Evalue3.01e-12
Seed ortholog2880.D7FZR8
Hectar predicted targeting categoryother localisation
TranscriptId174125
TrackFilteredModels1
ProteinId173803
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173803gene_9513Tribonema minus UTEX_B_3156 geneContig_106 334563..334796 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9513_1exon_9513_1Tribonema minus UTEX_B_3156 exonContig_106 334563..334796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9513CDS_9513Tribonema minus UTEX_B_3156 CDSContig_106 334563..334796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173803Trimin1|173803|e_gw1.106.2.1Tribonema minus UTEX_B_3156 polypeptideContig_106 334563..334796 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9513 ID=mRNA_9513|Name=jgi.p|Trimin1|173803|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_106:334563..334796- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGTACACCTTTGGCACGCCGAGGCCAGGCGATGCTGCCTTTGGAGAGCT
CTTCAATCAAAGTGTGGGGACAGCGTACAGAGTGGTGCACAATCGCGATA
TCGTTCCACACCTGGCTCCTTGCTGTCACGAAGCCATATGGGGTGGCGGC
TGTGGAACTGGACAGGCAAGTGGGCAGGTTCACGGTGTACTATGCGGTTC
ACAGTTTCCGACTGTACTTTTGAAACACGCATAA
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protein sequence of jgi.p|Trimin1|173803

>Trimin1|173803|e_gw1.106.2.1 ID=Trimin1|173803|e_gw1.106.2.1|Name=jgi.p|Trimin1|173803|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp
LYTFGTPRPGDAAFGELFNQSVGTAYRVVHNRDIVPHLAPCCHEAIWGGG
CGTGQASGQVHGVLCGSQFPTVLLKHA*
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mRNA from alignment at Contig_106:334563..334796-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9513 ID=mRNA_9513|Name=jgi.p|Trimin1|173803|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_106:334563..334796- (Tribonema minus UTEX_B_3156 )
TTGTACACCTTTGGCACGCCGAGGCCAGGCGATGCTGCCTTTGGAGAGCT
CTTCAATCAAAGTGTGGGGACAGCGTACAGAGTGGTGCACAATCGCGATA
TCGTTCCACACCTGGCTCCTTGCTGTCACGAAGCCATATGGGGTGGCGGC
TGTGGAACTGGACAGGCAAGTGGGCAGGTTCACGGTGTACTATGCGGTTC
ACAGTTTCCGACTGTACTTTTGAAACACGCATAA
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Coding sequence (CDS) from alignment at Contig_106:334563..334796-

>mRNA_9513 ID=mRNA_9513|Name=jgi.p|Trimin1|173803|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_106:334563..334796- (Tribonema minus UTEX_B_3156 )
TTGTACACCTTTGGCACGCCGAGGCCAGGCGATGCTGCCTTTGGAGAGCT
CTTCAATCAAAGTGTGGGGACAGCGTACAGAGTGGTGCACAATCGCGATA
TCGTTCCACACCTGGCTCCTTGCTGTCACGAAGCCATATGGGGTGGCGGC
TGTGGAACTGGACAGGCAAGTGGGCAGGTTCACGGTGTACTATGCGGTTC
ACAGTTTCCGACTGTACTTTTGAAACACGCATAA
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