mRNA_6918 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A836CFW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW3_9STRA) HSP 1 Score: 201 bits (511), Expect = 7.550e-63 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1
Query: 1 MVADSYSSVVGGKLSLKTKSLFKGNKKRKAKKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
MVADSYSSVVGGKLSLKTKSLFKGNKKRKAKKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG
Sbjct: 1 MVADSYSSVVGGKLSLKTKSLFKGNKKRKAKKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 130
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A835YYZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ7_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 6.180e-20 Identity = 59/132 (44.70%), Postives = 76/132 (57.58%), Query Frame = 1
Query: 4 VADSYSSVVGGKLSLKTKSLFKGNKKR---KAKKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
+AD YSSV GKLSLK LF G + K+A +GA S EPA D D LTPAQKR+K+ + +++ + ++ +VK THR R+EEFN +A +TEHNDIPRISAAGNG
Sbjct: 1 MADDYSSVQRGKLSLKADGLFGGGANKGGGNKKRAREGA--SEEPARSNSAKGSADSVRGAAAPSVSGSSDVDSGLTPAQKRFKEAQLARERQVMRELVKKTHRQRVEEFNQKIAKLTEHNDIPRISAAGNG 130
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: D7FPR7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR7_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 5.050e-14 Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query: 211 DEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
D+ LTPAQ+R+++++ ++ K+I+ +V+ THR+RIE FN+ LASMTEHNDIPR SAAGNG
Sbjct: 118 DDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 177
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A7S3LZW5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZW5_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.240e-13 Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query: 211 DEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
+E+LTP+QKR+ Q+K ++++ K + K + RDR+E FNS LASMTEHNDIPRISAAGNG
Sbjct: 67 EEYLTPSQKRHLQRKIEKEKEEAKKLSKTSFRDRVEIFNSKLASMTEHNDIPRISAAGNG 126
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A482S2J5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2J5_9ARCH) HSP 1 Score: 68.6 bits (166), Expect = 2.690e-11 Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 211 DEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
D LT AQ+R+K+++ ++EK+IK + RDR+EEFN L+ +TEHNDIPR+SAAGNG
Sbjct: 58 DAHLTEAQRRFKRRQQEKEEKKIKVEASKSFRDRVEEFNYKLSKLTEHNDIPRVSAAGNG 117
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A067C7L3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C7L3_SAPPC) HSP 1 Score: 67.4 bits (163), Expect = 8.610e-11 Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query: 10 DSYSSVVGGKLSLKTKSL-FKGNKKRKA----KKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTP------AQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
D Y +++GGKLSLK K + K K +KA +K EDG E AA ++ VD D L P AQK++ + K+ ++E+ I+ T+R+R+EE+++ L ++TEH+D+PR+SAAGNG
Sbjct: 2 DGYRNIMGGKLSLKAKGIPVKAKKTKKAXXXSRKHEDG--DDGEVAAKKTTS-------------KKVRVDDDVVLVPMGGMTDAQKKHAKFKSKREEEDIRKQASKTYRERVEEYSTYLGNLTEHHDVPRVSAAGNG 124
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A3M6VP18_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP18_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 2.490e-10 Identity = 32/66 (48.48%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 193 ETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
+ EVD +E +TPAQ+R+ + + ++++ IK + T+R+RIEE N L S+TEH+D+PR+SAAGNG
Sbjct: 49 DVEVDTEE-MTPAQRRHAEHQKKREQEEIKKLASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 113
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A7S2H078_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H078_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 2.620e-10 Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 214 EFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
E LT AQKRY+ +++++ + V+ THR+++E+FN L +TEHNDIPR+SAAGNG
Sbjct: 57 EVLTAAQKRYRATMKAREQEHARVAVRKTHREKVEDFNYMLGELTEHNDIPRVSAAGNG 115
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A1V9YXG3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXG3_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 3.640e-10 Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 1
Query: 10 DSYSSVVGGKLSLKTKSLFKGNKKRKAKKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTP------AQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
D Y +V+GGKLSLK K + KK K K+ +DG ++ +V+ D L P AQ ++++ K+ ++E IK T+R+R+EE++ L ++TEH+D+PR+SAAGNG
Sbjct: 2 DGYRNVMGGKLSLKAKGIPTKAKKSKKKRKDDGDEVHAKKRTSK-------------------KVEDDVVLVPITGKTAAQMKHEKFKSKREEDEIKKNASKTYRERVEEYSQYLGNLTEHHDVPRVSAAGNG 115
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A7S2LCQ3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LCQ3_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.280e-10 Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 205 DPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
D ++ LT A++ Q K ++++ ++ + M+HR+R+EEFNS LA +TEHNDIPR+SAAGNG
Sbjct: 47 DDNDDLTEAERSAMQFKKEKEKRDLEKVANMSHRERVEEFNSKLAELTEHNDIPRVSAAGNG 108 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6918 ID=mRNA_6918|Name=jgi.p|Trimin1|348567|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=704bp|location=Sequence derived from alignment at Contig_27:378727..379430+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTGGCCGACTCCTACAGCTCGGTAGTGGGCGGCAAGCTGTCTCTCAAback to top protein sequence of jgi.p|Trimin1|348567 >Trimin1|348567|estExt_Genemark1.C_Ctg_270041 ID=Trimin1|348567|estExt_Genemark1.C_Ctg_270041|Name=jgi.p|Trimin1|348567|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp MVADSYSSVVGGKLSLKTKSLFKGNKKRKAKKAEDGAGQSSEPAAPAQAAback to top mRNA from alignment at Contig_27:378727..379430+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6918 ID=mRNA_6918|Name=jgi.p|Trimin1|348567|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=704bp|location=Sequence derived from alignment at Contig_27:378727..379430+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_27:378727..379430+ >mRNA_6918 ID=mRNA_6918|Name=jgi.p|Trimin1|348567|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_27:378727..379430+ (Tribonema minus UTEX_B_3156 )back to top |