mRNA_9512 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Match: A0A835ZFR0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFR0_9STRA) HSP 1 Score: 387 bits (993), Expect = 2.630e-136 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 Query: 1 MQIKLVLSAQDNAASIWPAINLSSQINRCCLPCVCSYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQWTVTNS 549 MQIKLVLSAQDNAASIWPAINLSSQINRCCLPCVCSYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQWTVTNS Sbjct: 1 MQIKLVLSAQDNAASIWPAINLSSQINRCCLPCVCSYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQWTVTNS 183
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Match: A0A662X5C2_9STRA (EF-hand domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5C2_9STRA) HSP 1 Score: 189 bits (481), Expect = 2.200e-52 Identity = 87/145 (60.00%), Postives = 110/145 (75.86%), Query Frame = 1 Query: 106 SYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQWTV 540 SYITHLDF DG + +Q+N G YELLFS+A TG QITSA++ +D +W++WTCTLGWPVQGIWP+ +DGTDVNAV ++ LL T+DD VK++RYPC AHA +V GHSSHVTN+RW+ N S +ISTG D C+M+W V Sbjct: 1526 SYITHLDFSADG--SVIQSNCGAYELLFSSAATGKQITSASSTKDTQWQSWTCTLGWPVQGIWPRCSDGTDVNAVARNSREDLLVTSDDF-GLVKLYRYPCTVAHASSVDQRGHSSHVTNVRWSHNDSHVISTGGNDRCVMEWKV 1667
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Match: K3WHU2_GLOUD (EF-hand domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHU2_GLOUD) HSP 1 Score: 184 bits (466), Expect = 2.280e-50 Identity = 85/147 (57.82%), Postives = 106/147 (72.11%), Query Frame = 1 Query: 106 SYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQWTVTN 546 SYITH+DF D + LQ+N G YELLFS+A G ITSA++ +D +W+TWTC LGWPVQGIWP +DGTDVNAVD ++ LLAT+DD VK++RYPCV +A + GHSSHVTN+RWN N + +IS G D CIM+W V N Sbjct: 1477 SYITHIDFSSDSK--ILQSNCGAYELLFSDATNGRHITSASSTKDTQWQTWTCVLGWPVQGIWPPCSDGTDVNAVDRNSKGNLLATSDDF-GLVKLYRYPCVTKNASSTENRGHSSHVTNVRWNANDTHVISVGGNDRCIMEWKVMN 1620
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Match: A0A6G0XM90_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XM90_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.390e-49 Identity = 79/147 (53.74%), Postives = 103/147 (70.07%), Query Frame = 1 Query: 106 SYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQWTVTN 546 SYITH+DF D + LQ+N G YELLF + +TG QI SA ++D W++WTC LGWPVQGIWP+ ADGTD+N+V ASA R L+ T DD S VK+FRYPC+ A+ + GHSSHVTN+R+ R+ +IS G D MQW +++ Sbjct: 107 SYITHIDFSSDDKY--LQSNCGGYELLFCDTQTGKQIKSAKMLKDVMWDSWTCALGWPVQGIWPEFADGTDINSVCASASRTLITTGDDS-SCVKVFRYPCLTKGAKFIQGKGHSSHVTNVRFTRDDKYIISIGGNDRTTMQWKLSD 250
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Match: A0A5D6XKB7_9STRA (EF-hand domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKB7_9STRA) HSP 1 Score: 176 bits (447), Expect = 8.180e-48 Identity = 82/145 (56.55%), Postives = 102/145 (70.34%), Query Frame = 1 Query: 106 SYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQWTV 540 SYITHLDF D LQ+ G YELLFS+A +G +T+A++ +D W+TWTC LGWPVQGIWP GADGTDVNA +A LLATADD VK+FRYPCV HA A+ GH+SHVTN+RW+ + ++S G D C+M+W V Sbjct: 1559 SYITHLDFSSDS--ATLQSTCGAYELLFSDAASGRHLTAASSTKDTSWQTWTCVLGWPVQGIWPPGADGTDVNAAARNARSDLLATADDF-GLVKLFRYPCVARHAGALEHRGHASHVTNVRWSAGDAYVVSVGGNDRCVMEWKV 1700
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Match: A0A7S2S9Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9Q1_9STRA) HSP 1 Score: 172 bits (437), Expect = 9.630e-48 Identity = 83/143 (58.04%), Postives = 99/143 (69.23%), Query Frame = 1 Query: 106 SYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQW 534 SYITHLDF DG+ LQ+ G YE+LFS+ TG QITSA+ ++D +W +WTCTLGWPVQGIWP ADGTDVN+V + LLAT DD VK+FRYPC+ A A+ GHSSHVTN+RW LISTG D C+ QW Sbjct: 64 SYITHLDFSEDGRY--LQSTCGAYEILFSDTVTGKQITSASDLKDTQWASWTCTLGWPVQGIWPACADGTDVNSVSRCHAQILLATGDDFGK-VKLFRYPCIPKGAHALEFAGHSSHVTNVRWTALDDYLISTGGNDRCVFQW 203
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Match: A0A418APL5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418APL5_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.020e-47 Identity = 82/143 (57.34%), Postives = 102/143 (71.33%), Query Frame = 1 Query: 106 SYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQW 534 SYITHLDF D + +Q+N G YELLFS+A TG Q+TSA ++RD +W++WTC LGWPVQGIWP ADGTD+NAVD S L+AT DD VK+FR+P V H+ + GHSSHVTN+RW + + +ISTG D IMQW Sbjct: 250 SYITHLDFSSDSKY--IQSNCGAYELLFSDATTGKQVTSARSLRDVKWDSWTCALGWPVQGIWPTCADGTDINAVDRSHSCDLVATGDDFGH-VKLFRFPAVAKHSVSYSYSGHSSHVTNVRWLGSDTHVISTGGLDRTIMQW 389
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Match: A0A2D4C2Z3_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2Z3_PYTIN) HSP 1 Score: 176 bits (445), Expect = 1.560e-47 Identity = 83/147 (56.46%), Postives = 103/147 (70.07%), Query Frame = 1 Query: 106 SYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQWTVTN 546 SYITHLDF DG+ LQ+N G YELLFS+A TG ITSA++ RD W +WTC LGWPVQGIWP +DGTDVNAV +A LL T+DD VK+FRYPC+ +A AV GH+SHVTN+RW R S ++S G D +M+W + + Sbjct: 3785 SYITHLDFSSDGR--VLQSNCGAYELLFSDASTGKHITSASSTRDVAWHSWTCVLGWPVQGIWPPCSDGTDVNAVARNAKGDLLVTSDDF-GLVKLFRYPCIXKNAGAVEHRGHASHVTNVRWTRGDSHVVSVGGNDRAVMEWRLVS 3928
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Match: A0A0N7L5A4_PLAHL (Echinoderm microtubule-associated 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5A4_PLAHL) HSP 1 Score: 175 bits (443), Expect = 2.810e-47 Identity = 84/147 (57.14%), Postives = 102/147 (69.39%), Query Frame = 1 Query: 106 SYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQWTVTN 546 SYITH DF D Q LQ+N G YELLFSNA TG ITSA++ RD W +WTC LGWPVQGIWP +DGTDVN+V ++ LL TADD VK++RYPCV +A +V GHSSHVTN+RW+ N S +IS G D IM+W + + Sbjct: 1361 SYITHFDFSSDSQ--ILQSNCGAYELLFSNANTGKHITSASSTRDTPWYSWTCVLGWPVQGIWPPFSDGTDVNSVARNSSGHLLVTADDFGR-VKLYRYPCVAKNASSVDYRGHSSHVTNVRWSCNDSYIISIGGNDRAIMEWRIVS 1504
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Match: A0A067D8Y7_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D8Y7_SAPPC) HSP 1 Score: 174 bits (441), Expect = 5.230e-47 Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 1 Query: 106 SYITHLDFGRDGQRTCLQTNSGDYELLFSNAETGAQITSATAVRDCEWETWTCTLGWPVQGIWPKGADGTDVNAVDASADRRLLATADDKASAVKIFRYPCVNAHAEAVPAGGHSSHVTNIRWNRNASKLISTGRRDGCIMQW 534 SYITH DF D + LQ+N G YELLFS+ ITSA ++RD WETWTCTLGWPVQGIWP ADGTD+NAV S++ +L+AT DD VK+FRYPCV H+ A GHSSHVTN+RW N + ++STG D I+QW Sbjct: 1467 SYITHFDFSSDSKY--LQSNCGAYELLFSDPSNAKHITSAKSLRDVAWETWTCTLGWPVQGIWPPCADGTDINAVHRSSNMQLVATGDDFGK-VKLFRYPCVAKHSVAYAYAGHSSHVTNVRWLHNDTHVVSTGGLDRSILQW 1606 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173750 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9512 ID=mRNA_9512|Name=jgi.p|Trimin1|173750|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=552bp|location=Sequence derived from alignment at Contig_106:328686..330195+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGATAAAATTGGTCCTCTCTGCACAGGACAATGCTGCAAGCATCTGback to top protein sequence of jgi.p|Trimin1|173750 >Trimin1|173750|e_gw1.106.10.1 ID=Trimin1|173750|e_gw1.106.10.1|Name=jgi.p|Trimin1|173750|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=184bp MQIKLVLSAQDNAASIWPAINLSSQINRCCLPCVCSYITHLDFGRDGQRTback to top mRNA from alignment at Contig_106:328686..330195+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9512 ID=mRNA_9512|Name=jgi.p|Trimin1|173750|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1510bp|location=Sequence derived from alignment at Contig_106:328686..330195+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_106:328686..330195+ >mRNA_9512 ID=mRNA_9512|Name=jgi.p|Trimin1|173750|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=552bp|location=Sequence derived from alignment at Contig_106:328686..330195+ (Tribonema minus UTEX_B_3156 )back to top |