mRNA_6899 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Match: A0A835Z5R2_9STRA (THUMP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R2_9STRA) HSP 1 Score: 286 bits (733), Expect = 1.040e-97 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1
Query: 1 LRGVVVVCVLDKTLDIVSITAELFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLREPVKWAVSLTRRNSGMQRQQVVDVFGGLVPNVHTVSLSEPEMVIVVEAMRGIIGVSVMKAATKVACSDFNLRRLQDEVCK 453
LRGVVVVCVLDKTLDIVSITAELFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLREPVKWAVSLTRRNSGMQRQQVVDVFGGLVPNVHTVSLSEPEMVIVVEAMRGIIGVSVMKAATKVACSDFNLRRLQDEVCK
Sbjct: 1 LRGVVVVCVLDKTLDIVSITAELFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLREPVKWAVSLTRRNSGMQRQQVVDVFGGLVPNVHTVSLSEPEMVIVVEAMRGIIGVSVMKAATKVACSDFNLRRLQDEVCK 151
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Match: C1E322_MICCC (THUMP domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E322_MICCC) HSP 1 Score: 71.6 bits (174), Expect = 5.290e-12 Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 103 SRFLIRAVPLATTCYGDAESLVGIAKPLVDEAF----ETLREPVKWAVSLTRRNSGMQRQQVVDVFGGLVPNVHTVSLSEPEMVIVVEAMRGIIGVSVMK 390
SR +R VP+ C+ E +V AKPL+DEAF E +E V +R NS ++R ++V LVP H V L +PE+V++VEA++G+ V+V+K
Sbjct: 159 SRHTLRIVPVEKVCFAAVEDVVKAAKPLIDEAFPAHCEEGKEKTFAVVFNSRANSTLRRSELVPEIANLVPEPHKVELGKPELVVLVEAVKGVATVAVVK 258
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Match: UPI0018AE5BC3 (THUMP domain-containing protein 1 homolog n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AE5BC3) HSP 1 Score: 65.9 bits (159), Expect = 1.000e-9 Identity = 41/130 (31.54%), Postives = 66/130 (50.77%), Query Frame = 1
Query: 52 SITAELFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLR-EPVKWAVSL-TRRNSGMQRQQVVDVFGGLVPNVHTVSLSEPEMVIVVEAMRGIIGVSVMKAATKVACSDFNLRRL 435
SI + + T+ SRF++R +P CY E + KPLV+ F P K+AV R N+G++R +++ VP H V L P+ I+V+ ++ I V V+K ++ S +NLR+L
Sbjct: 262 SIVQHMMTSAASTRKHMSRFILRILPAEVACYASEEEITKAIKPLVEHHFPAEPPNPQKFAVLYEARSNTGIERMPIINAVAKSVPQPHKVDLKNPDKTIIVQIVKTICLVGVVKKYKEL--SKYNLRQL 389
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Match: A0A8J9XM53_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9XM53_BRAAE) HSP 1 Score: 64.7 bits (156), Expect = 1.230e-9 Identity = 37/119 (31.09%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 43 DIVSITAELFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLREPVKWAVSLTRRNS-GMQRQQVVDVFGGLVPNV---HTVSLSEPEMVIVVEAMRGIIGVSVM 387
D V + ++ +D+ +TK +++RFLIR VP+ TTC + + L PL+++ F++ +PV +A+ RN G+ R +V+ G ++ + H V+L E ++ I+VE +R + + V+
Sbjct: 107 DPVLLAHKIVTDINETKSQQTRFLIRLVPIETTCKANMKDLEKAFTPLLEKHFKS--DPVNFAIVYNHRNDKGLTRDEVIKKLGEMIADTKIDHKVNLKEADVSIIVEVVRSFVFIGVV 223
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Match: S8BYX7_DACHA (THUMP domain-containing protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8BYX7_DACHA) HSP 1 Score: 65.1 bits (157), Expect = 2.220e-9 Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = 1
Query: 67 LFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLREPVKWAVSLTRRNSG-MQRQQVVDVFGGLVPNVHTVSLSEPEMVIVVEAMRGIIGVSVMKAATKVACSDFNLRRLQDE 444
+F D+ K R +RF R P++ TC + E L IAK ++ F ++ VK+A+ R+ M R Q++ +V + H V L +++IVVE +R + GVSV++ FNL ++ DE
Sbjct: 749 IFKDIEDNKKRLTRFTNRLTPISKTCKANYEDLESIAKEVLKPHFHEGQKDVKFAIRPNLRDHNVMNRDQIIKTVARVVGSDHKVDLKNYDLLIVVEVLRNVCGVSVVRDFEHY--KRFNLAKVLDE 873
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Match: A0A2R6WHB6_MARPO (THUMP domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WHB6_MARPO) HSP 1 Score: 63.9 bits (154), Expect = 4.590e-9 Identity = 34/121 (28.10%), Postives = 66/121 (54.55%), Query Frame = 1
Query: 76 DVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLREPVKWAVSL-TRRNSGMQRQQVVDVFGGLVPNVHTVSLSEPEMVIVVEAMRGIIGVSVMKAATKVACSDFNLRRL 435
D TK ++R +R +P+ TCY ++ +A+PL+ F + +K+AV R N+ +++ ++ LVP H+V LS P+ I+V+ ++ + V++ ++A +NLR+L
Sbjct: 247 DAASTKQSKTRHCMRLLPVELTCYASTAEMLKVAEPLIQRHFPADQPSIKFAVVCEARANTNLKKMDFINAIAKLVPEPHSVDLSNPQKTILVQVVKTACAIGVVQDFKELA--KYNLRQL 365
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Match: A0A7S0QW70_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QW70_9CHLO) HSP 1 Score: 62.8 bits (151), Expect = 5.840e-9 Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 67 LFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLR--EPVKWAVSL-TRRNSGMQRQQVVDVFGGLVPNVHTVSLSEPE 336
L DV++TK ++ RFL+R +P+A TC+ + + K LVDE F T PVK++V L R + + + +++D+ +VP H V LS PE
Sbjct: 63 LVQDVKETKEKKCRFLMRILPVANTCFPSKDLIEKNVKSLVDEHFPTEEGVTPVKFSVVLEVRAFNSIPKNEIIDLVAQMVPKPHKVDLSNPE 155
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Match: A0A7S0QPG0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QPG0_9CHLO) HSP 1 Score: 62.8 bits (151), Expect = 1.120e-8 Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 67 LFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLR--EPVKWAVSL-TRRNSGMQRQQVVDVFGGLVPNVHTVSLSEPE 336
L DV++TK ++ RFL+R +P+A TC+ + + K LVDE F T PVK++V L R + + + +++D+ +VP H V LS PE
Sbjct: 179 LVQDVKETKEKKCRFLMRILPVANTCFPSKDLIEKNVKSLVDEHFPTEEGVTPVKFSVVLEVRAFNSIPKNEIIDLVAQMVPKPHKVDLSNPE 271
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Match: Q17HE7_AEDAE (AAEL002719-PA n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q17HE7_AEDAE) HSP 1 Score: 61.2 bits (147), Expect = 3.700e-8 Identity = 35/115 (30.43%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 55 ITAELFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLREPVKWAVSLTRR-NSGMQRQQVVDVFGGLVP--NVHT-VSLSEPEMVIVVEAMRGIIGVSVM 387
I ++ ++ +TK R+SR ++R +P+ + + ++ A L D+ F L+EP K+A+ RR N+ + R +V+D GL+ N+H +L P++ I+VE ++G+ +SV+
Sbjct: 135 IALKILRELNETKKRKSRNILRLMPIEVVTRANLKDIIDAAGALFDKYF--LKEPKKFAIMFNRRFNNNVDRSEVIDQLAGLITSKNIHNKANLKNPDLAIIVEVIKGLCLISVV 247
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Match: A0A507E8R6_9FUNG (THUMP domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E8R6_9FUNG) HSP 1 Score: 60.1 bits (144), Expect = 8.300e-8 Identity = 37/134 (27.61%), Postives = 74/134 (55.22%), Query Frame = 1
Query: 49 VSITAELFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAF--ETLREPVKWAV-SLTRRNSGMQRQQVVDVFGGLVPNVHTVSLSEPEMVIVVEAMRGIIGVSVMKAATKVACSDFNLRRLQD 441
V + L SD+ ++K + +R+ R P+ +TC E + +AK L+ F E + +KWA+ S + N + R++V++ +V H V+L +PE+ IVV+ ++ + G+SV++ + +NL ++ +
Sbjct: 129 VELVHRLLSDLNQSKQKMTRYTQRLHPVQSTCRPYVEDIKVMAKKLLAPHFHAEGGTKGIKWAIESRIKWNDNVTREEVIEAIAEVVGTDHVVNLKQPELTIVVDILKNVCGMSVVRDYPEF--KKYNLEKINE 260 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163797 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6899 ID=mRNA_6899|Name=jgi.p|Trimin1|163797|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_27:264330..264785+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCCGCGGCGTAGTAGTAGTGTGTGTGCTGGATAAGACACTGGACATTGTback to top protein sequence of jgi.p|Trimin1|163797 >Trimin1|163797|e_gw1.27.7.1 ID=Trimin1|163797|e_gw1.27.7.1|Name=jgi.p|Trimin1|163797|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=152bp LRGVVVVCVLDKTLDIVSITAELFSDVRKTKVRRSRFLIRAVPLATTCYGback to top mRNA from alignment at Contig_27:264330..264785+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6899 ID=mRNA_6899|Name=jgi.p|Trimin1|163797|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_27:264330..264785+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_27:264330..264785+ >mRNA_6899 ID=mRNA_6899|Name=jgi.p|Trimin1|163797|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=456bp|location=Sequence derived from alignment at Contig_27:264330..264785+ (Tribonema minus UTEX_B_3156 )back to top |