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Homology
BLAST of jgi.p|Trimin1|163735 vs. uniprot
Match: A0A835Z2F0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F0_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.760e-22 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1
Query: 1 MLTNTAPLVLQSDAPPPAEALLTRPPEHISGPALTSLGVSNSYGIARIPDSIGELTA 171
MLTNTAPLVLQSDAPPPAEALLTRPPEHISGPALTSLGVSNSYGIARIPDSIGELTA
Sbjct: 1 MLTNTAPLVLQSDAPPPAEALLTRPPEHISGPALTSLGVSNSYGIARIPDSIGELTA 57
BLAST of jgi.p|Trimin1|163735 vs. uniprot
Match: A0A835YXX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX7_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 9.840e-11 Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query: 1708 DECGVKGVPATFVHAPGTRYWERIYAAYATVARKRS 1815
DECGVKGVPATFVHAPGT +WERIYAAYATVARKRS
Sbjct: 531 DECGVKGVPATFVHAPGTGHWERIYAAYATVARKRS 566
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|163735|e_gw1.27.189.1 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 164057 |
| Track | FilteredModels1 |
| ProteinId | 163735 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6992 ID=mRNA_6992|Name=jgi.p|Trimin1|163735|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1818bp|location=Sequence derived from alignment at Contig_27:1074477..1078841- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGCTGACAAACACGGCACCTCTAGTCCTTCAGTCCGATGCACCACCGCC GGCAGAGGCCCTCCTTACCCGCCCACCGGAGCACATCAGCGGACCAGCGC TGACATCCCTCGGCGTGTCAAACTCCTACGGCATCGCCAGAATTCCGGAC AGCATCGGCGAGCTAACTGCACTGACATCGCTCAGCTTTGTAAAATGCGG TAGAATCACCAGCCTGCCTGAGTTTATTGGGGAACTGACTGCGCTGACGG CGCTCTCCGTGCAAAGCTGCGGTCAGCTGAGAGCTCTGCCGGACAGCATC AGCAGCCTGACGCGGCTCACGGCGCTGTCACTGCGCCACTGCCAGGAGCT GACGCGCCTACCAGATGGCATCGGCGACCTCACAGCGCTGATGACACTGG ATCTGAGCGACTGCTCAGCACTCAATGCCATACCTGAGACTATCGGCGGC TTATGTGCGCTCACGACGCTCGACCTGCAGAAGTGCTACAGCCTCACCTG CCTGCCGGACAGCCTCGGCAGCCTCGCTGCACTGGCGGCCCTCAAGTTGA GTTCATGCCAGTTCCGGCATCTTTTTGGCAGCATCGGCAATCTGGCAGCG CTGACGACGCTCGACTTGAGCTCATGCCGGGAGCTTCAAGCACTGCCGGA CACCATTGGTCAACTAACTGCTCTGGCAGAGCTCAACCTCATGGCGTGCA TGACGCTGGCGGGCTTGCCCCTCAGCATCGGCAAACTGTGCGCGCTGACG CAGCTGACGCTCAGTGAGTGCGAAGCGCTCGTGTCCCTGCCGGAGTCCAT CGGCGACCTGGCGGCTCTGACGGCCCTCGATCTGCCCCAATGCTGCGCGC TCGTAGCCCTGCCGGAGTCCATCGGCGGCCTGGCGGCTCTGACGGCCCTC GATCTGAACGGCTGCCAGGCGCTGACGCCTCTGCCGGACAGCATCAGCAG CCTGACGCGGCTCACAGCACTGTCGCTGCACGAGTGCCGGGAGCTGAGGC ACCTGCCAGATGGCATCGGCAACCTCACAGCGCTGGCGACACTGGATCTG AGCGACTGCTCGGCACTCGACGGTTTACCTGAGACCGTAGGCAGCTTGTG CGCGCTCACGTCGCTCAACCTGCAGAAGTGCTACAGCCTCACCTGCCTGC CGGACAGCCTCGGCAACCTCGCTGCACTTGCGACCCTCAAGTTGAGGTCA TGCCAGTCATGTCATCTGCCTGGCAGCATCGGCAATCTGTCAGCGTTTAC GACGCTCGACTTGAGCTCATGCCGGGAGCTTGAAGCACTGCCAGACACCA TTGGTCAACTAGCTGCTCTAACAGAGCTCAACATCGCGGCGTGCAGCTCC CTGCAGCGCCTGCCAGCTTCCATTGCGGCGCTGACGCAGCTGCACACGCT GGCAGCGCTCAACCTGTCCGGCTGCCCCGCGCTGACGAGTCAGCCCAGTG ACATCGGCCGCCTGCGCGCGCTGACGCAGCTGACGCTCAGCGAGTGCCGT GCGCTCGTGTCTCTGCTGGAGTCCATCGACGGGATGAGGGCGCTGACGGC CCTCGACATGCGTGGCTGCCGCGCGCTCGTCGCCCTGCCGGAGTCCATCG GCGGCCTGGCGGCTCTGACGGCCCTCGACCTGCGCGGCTGCCGAGCGCTG ACACGGCTGCCGCAGCGCGTCGTCGAGCTGACGGCGCTGCAGCGCATCGA CCTCCGCGACGAGTGCGGGGTGAAGGGGGTGCCAGCCACCTTCGTGCACG CGCCGGGGACCAGGTACTGGGAGCGCATCTACGCTGCGTATGCGACGGTG GCGCGCAAGCGCAGCTGA back to topprotein sequence of jgi.p|Trimin1|163735 >Trimin1|163735|e_gw1.27.189.1 ID=Trimin1|163735|e_gw1.27.189.1|Name=jgi.p|Trimin1|163735|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=606bp
MLTNTAPLVLQSDAPPPAEALLTRPPEHISGPALTSLGVSNSYGIARIPD SIGELTALTSLSFVKCGRITSLPEFIGELTALTALSVQSCGQLRALPDSI SSLTRLTALSLRHCQELTRLPDGIGDLTALMTLDLSDCSALNAIPETIGG LCALTTLDLQKCYSLTCLPDSLGSLAALAALKLSSCQFRHLFGSIGNLAA LTTLDLSSCRELQALPDTIGQLTALAELNLMACMTLAGLPLSIGKLCALT QLTLSECEALVSLPESIGDLAALTALDLPQCCALVALPESIGGLAALTAL DLNGCQALTPLPDSISSLTRLTALSLHECRELRHLPDGIGNLTALATLDL SDCSALDGLPETVGSLCALTSLNLQKCYSLTCLPDSLGNLAALATLKLRS CQSCHLPGSIGNLSAFTTLDLSSCRELEALPDTIGQLAALTELNIAACSS LQRLPASIAALTQLHTLAALNLSGCPALTSQPSDIGRLRALTQLTLSECR ALVSLLESIDGMRALTALDMRGCRALVALPESIGGLAALTALDLRGCRAL TRLPQRVVELTALQRIDLRDECGVKGVPATFVHAPGTRYWERIYAAYATV ARKRS* back to topmRNA from alignment at Contig_27:1074477..1078841- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6992 ID=mRNA_6992|Name=jgi.p|Trimin1|163735|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4365bp|location=Sequence derived from alignment at Contig_27:1074477..1078841- (Tribonema minus UTEX_B_3156 ) ATGCTGACAAACACGGCACCTCTAGTCCTTCAGTCCGATGCACCACCGCC
GGCAGAGGCCCTCCTTACCCGCCCACCGGAGCACATCAGCGGACCAGCGC
TGACATCCCTCGGCGTGTCAAACTCCTACGGCATCGCCAGAATTCCGGAC
AGCATCGGCGAGCTAACTGCACTGACATCGCTCAGCTTTGTAAAATGCGG
TAGAATCACCAGCCTGCCTGAGTTTATTGGGGAACTGACTGCGCTGACGG
CGCTCTCCGTGCAAAGCTGCGGTCAGCTGAGAGCTCTGCCGGACAGCATC
AGCAGCCTGACGCGGCTCACGGCGCTGTCACTGCGCCACTGCCAGGAGCT
GACGCGCCTACCAGATGGCATCGGCGACCTCACAGCGCTGATGACACTGG
ATCTGAGCGACTGCTCAGCACTCAATGCCATACCTGAGACTATCGGCGGC
TTATGTGCGCTCACGACGCTCGACCTGCAGAAGTGCTACAGCCTCACCTG
CCTGCCGGACAGCCTCGGCAGCCTCGCTGCACTGGCGGCCCTCAAGTTGA
GTTCATGCCAGTTCCGGCATCTTTTTGGCAGCATCGGCAATCTGGCAGCG
CTGACGACGCTCGACTTGAGCTCATGCCGGGAGCTTCAAGCACTGCCGGA
CACCATTGGTCAACTAACTGCTCTGGCAGAGCTCAACCTCATGGCGTGCA
TGTCCCTGCAGCGCCTGCCAGTTTCCATTGCGGCGCTGACGCAGCTGCAG
TCGCTCGGAATGTCAAGCTCACGTGCCGACGGGCTGCTCCCCAGTTTCCG
CTGCCTCGCAACGCTGACGTCACTGGATTTGCAGCGCACCGATGACGTGC
AAATGGCGTTCGTGGAGGAGTGCATACGCGAGATGGCGGCGCTGCGGACG
CTCTATCTGAGCTGTTGGCAGACCACGGCATTGCAACGGGCCGTCTGCGC
GCTGTCAACGTTGACGCACCTCAATCTGTGCTATTCGGAGCTTGCGGCGT
TGCCAGAGCCCATCGGCGAGCTGCATGAGCTGACTGCGCTCGACCTGTCC
TGCTGCAGGACGCTGGCGGGCTTGCCCCTCAGCATCGGCAAACTGTGCGC
GCTGACGCAGCTGACGCTCAGTGAGTGCGAAGCGCTCGTGTCCCTGCCGG
AGTCCATCGGCGACCTGGCGGCTCTGACGGCCCTCGATCTGCCCCAATGC
TGCGCGCTCGTAGCCCTGCCGGAGTCCATCGGCGGCCTGGCGGCTCTGAC
GGCCCTCGATCTGAACGGCTGCCAGGCGCTGACGCGTCTACCGGAGTGCA
TTGCGGCGCTGACGGCGCTGCAGCGCTTGGACCTCGGCGGCGGCTGCGGA
GTGCAGGAGGCGCCAACTGCCTTTGTGCACGCACCAGGGAGCAGTTATCA
GGGAGCCATCTACGCTGCGTGTCCAAGTTCGGCGCTCGACCTCAGCTGAG
TGCGTATCATACAAGTGGCAGAGGCGTGTCCATATCATGATGGTGCGCTA
GCTTTGACAAATACTGCGGCTTGTTGCGGTAGGCCTCACGCCACAGGCGC
TTGCACTGTTGACGCTACCAAGTAGCTGGGAACTGAATCGATGACCACAT
GCTCTCTTGTGTCATGTCAACTGCTGTGACGTTGATCTGCGTGTCTGGAC
TGCATGTGGTGTCGTGTATGCTGGTAGATTGCAATGGCAGTGTACTGCTG
CCGGTGCTGCTGCTGGTGCTGGTAGGTCGCCCTGCAAATCCATGTGGGAA
CTGCTATCATGCAGCAATGCCGCAATGCCACACGTGCTTGCTTTTGGGAT
TCATCACACATGTGCTGATCAGCTGCGCCATCAGAGACACTCGCGCGCAA
GCACGTCTTGTACCTCCAGGTGGGAGGAACCACTGCATCTCAAGAAGCGT
TTTGCGCCATTGTGGTGGTCACTAGCGATATCGTGCCGATGATCACTTCA
CACAGCGTCAGGCAGTGCAGCCATATATGTATGAGATCATAAAGCAGGCC
TGTCAGAGAGAGTCATTGCAGCTGTGGTGAGAATTTGGAGGCGGTGTTCA
TTCGGATCCGACCTGTGATGACATTTTGATCACAAATCGACTACTGGCGT
CAGTTGCGCAACCTTCATGATGCTGCCTGTGCACGTCTTCGTGGCATGTG
TCACCTTTCTCCACCAATTGCAAGGCGTAAATGAGCAACTGCACTAAATA
GGGTCCTGCGCCGATGGGCTACGGGCAAGATAGTCAGCAATAAAATGTTT
TTGCCAGATGACAACGCCGGTGCTGCGAGGTGACGGCATAAGGATGGATC
TGTTTTCACCTGAACTTCAGGCCTTCACTGAAGTTCACAGTTGAAGTTCG
TGGGAAACGGTTTGAGGTTGAGAGAGGAGATTTGCGAGCACCAGCATGAG
CTGCGACGGTAAAAATGTTGGCACGGGTGCTATGGAGGCCTCATTACTGC
AAAAGCGCCACAAGGATGCAGGCGGTCACGAGAACGGAAGCCCAGAGGCA
ATCACCCAAGTGTTGTCGGTGATGGCCCACACGCGATTGCTGCCCAGGAC
CGCCTGGATTTGAGCAGGGCTGTGCGCAGGACAAAGAGACCAGTAGTTCA
CTTCAATCTTGGGACGCCAGACTGGTTGTGCTCTCCGGCGCATTTACTGC
CTACTGCGGCTCGGGTCTTTGGCAGCAAAACGGTTGTCAACCTCGGGCTG
TACGGGGACTTCAAGGTGGGTCCGCTGCTTGCCATCGCAGGAAGGCTGGT
CACATCTGCTGCCAACAGTGACGCTACAGACGACTTCAATGTCTTCTTCA
GGAACATCAAGGTTATGACCTTGTCGAAGCCAGCTGCGGCTCTCGCACGC
ATACCACGTTCGCTACAGGAACTGCACCTCGACTCCTGCGACCCCAACAT
TGTCGATAATCTGCTGCTTATGCTGACAAACACGGCACCTCTAGTCCTTC
AGTCCGATGCACCACCGCTGGCAGAGGCCCTCCTTACCCGCCCACCGGAG
CACATCAGCGGACCAGCGCTGACATCCCTCGGCTTGTCAAACTCCTACGG
CATCGCCAGAATTCCGGACAGCATCGGCGAGCTAACTGCACTGACATCGC
TCAGCTTTGTATAATGCGGTAGAATCACCAGCCTGCCTGAGTTTATTGGG
GAACTGACTGCGCTGACGGCGCTCTCCGTGCAAAGCTGCGGTCAGCTGAG
AGCTCTGCCGGACAGCATCAGCAGCCTGACGCGGCTCACAGCACTGTCGC
TGCACGAGTGCCGGGAGCTGAGGCACCTGCCAGATGGCATCGGCAACCTC
ACAGCGCTGGCGACACTGGATCTGAGCGACTGCTCGGCACTCGACGGTTT
ACCTGAGACCGTAGGCAGCTTGTGCGCGCTCACGTCGCTCAACCTGCAGA
AGTGCTACAGCCTCACCTGCCTGCCGGACAGCCTCGGCAACCTCGCTGCA
CTTGCGACCCTCAAGTTGAGGTCATGCCAGTCATGTCATCTGCCTGGCAG
CATCGGCAATCTGTCAGCGTTTACGACGCTCGACTTGAGCTCATGCCGGG
AGCTTGAAGCACTGCCAGACACCATTGGTCAACTAGCTGCTCTAACAGAG
CTCAACATCGCGGCGTGCAGCTCCCTGCAGCGCCTGCCAGCTTCCATTGC
GGCGCTGACGCAGTTGCAGTCGCTCGGGATGTCAGAGTTCAGTGCCGATA
GGCTGCTCCCCCGTTTCCGCTGCCTCGCAACGCTGACGTCCCTGGATGTG
CAACGCATTGACACCGGGGAGTTCCCGGAGAAGTGTGTCCGGGAGATGGC
GGCGCTGCGAAGGCTCGATTTGAGATACTGGCAGGCCGCAGCGCTGCCAG
AGGCCGTCTGTGACCTGCGAAGGCTGTCGCATCTCGATCTGGGCAATTCG
CTGCAGCTTGCAGCGCTGCCAGAGTCCTTCGGCAGGCTGCACACGCTGGC
AGCGCTCAACCTGTCCGGCTGCCCCGCGCTGACGAGTCAGCCCAGTGACA
TCGGCCGCCTGCGCGCGCTGACGCAGCTGACGCTCAGCGAGTGCCGTGCG
CTCGTGTCTCTGCTGGAGTCCATCGACGGGATGAGGGCGCTGACGGCCCT
CGACATGCGTGGCTGCCGCGCGCTCGTCGCCCTGCCGGAGTCCATCGGCG
GCCTGGCGGCTCTGACGGCCCTCGACCTGCGCGGCTGCCGAGCGCTGACA
CGGCTGCCGCAGCGCGTCGTCGAGCTGACGGCGCTGCAGCGCATCGACCT
CCGCGACGAGTGCGGGGTGAAGGGGGTGCCAGCCACCTTCGTGCACGCGC
CGGGGACCAGGTACTGGGAGCGCATCTACGCTGCGTATGCGACGGTGGCG
CGCAAGCGCAGCTGA back to topCoding sequence (CDS) from alignment at Contig_27:1074477..1078841- >mRNA_6992 ID=mRNA_6992|Name=jgi.p|Trimin1|163735|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1818bp|location=Sequence derived from alignment at Contig_27:1074477..1078841- (Tribonema minus UTEX_B_3156 ) ATGCTGACAAACACGGCACCTCTAGTCCTTCAGTCCGATGCACCACCGCC GGCAGAGGCCCTCCTTACCCGCCCACCGGAGCACATCAGCGGACCAGCGC TGACATCCCTCGGCGTGTCAAACTCCTACGGCATCGCCAGAATTCCGGAC AGCATCGGCGAGCTAACTGCACTGACATCGCTCAGCTTTGTAAAATGCGG TAGAATCACCAGCCTGCCTGAGTTTATTGGGGAACTGACTGCGCTGACGG CGCTCTCCGTGCAAAGCTGCGGTCAGCTGAGAGCTCTGCCGGACAGCATC AGCAGCCTGACGCGGCTCACGGCGCTGTCACTGCGCCACTGCCAGGAGCT GACGCGCCTACCAGATGGCATCGGCGACCTCACAGCGCTGATGACACTGG ATCTGAGCGACTGCTCAGCACTCAATGCCATACCTGAGACTATCGGCGGC TTATGTGCGCTCACGACGCTCGACCTGCAGAAGTGCTACAGCCTCACCTG CCTGCCGGACAGCCTCGGCAGCCTCGCTGCACTGGCGGCCCTCAAGTTGA GTTCATGCCAGTTCCGGCATCTTTTTGGCAGCATCGGCAATCTGGCAGCG CTGACGACGCTCGACTTGAGCTCATGCCGGGAGCTTCAAGCACTGCCGGA CACCATTGGTCAACTAACTGCTCTGGCAGAGCTCAACCTCATGGCGTGCA TGACGCTGGCGGGCTTGCCCCTCAGCATCGGCAAACTGTGCGCGCTGACG CAGCTGACGCTCAGTGAGTGCGAAGCGCTCGTGTCCCTGCCGGAGTCCAT CGGCGACCTGGCGGCTCTGACGGCCCTCGATCTGCCCCAATGCTGCGCGC TCGTAGCCCTGCCGGAGTCCATCGGCGGCCTGGCGGCTCTGACGGCCCTC GATCTGAACGGCTGCCAGGCGCTGACGCCTCTGCCGGACAGCATCAGCAG CCTGACGCGGCTCACAGCACTGTCGCTGCACGAGTGCCGGGAGCTGAGGC ACCTGCCAGATGGCATCGGCAACCTCACAGCGCTGGCGACACTGGATCTG AGCGACTGCTCGGCACTCGACGGTTTACCTGAGACCGTAGGCAGCTTGTG CGCGCTCACGTCGCTCAACCTGCAGAAGTGCTACAGCCTCACCTGCCTGC CGGACAGCCTCGGCAACCTCGCTGCACTTGCGACCCTCAAGTTGAGGTCA TGCCAGTCATGTCATCTGCCTGGCAGCATCGGCAATCTGTCAGCGTTTAC GACGCTCGACTTGAGCTCATGCCGGGAGCTTGAAGCACTGCCAGACACCA TTGGTCAACTAGCTGCTCTAACAGAGCTCAACATCGCGGCGTGCAGCTCC CTGCAGCGCCTGCCAGCTTCCATTGCGGCGCTGACGCAGCTGCACACGCT GGCAGCGCTCAACCTGTCCGGCTGCCCCGCGCTGACGAGTCAGCCCAGTG ACATCGGCCGCCTGCGCGCGCTGACGCAGCTGACGCTCAGCGAGTGCCGT GCGCTCGTGTCTCTGCTGGAGTCCATCGACGGGATGAGGGCGCTGACGGC CCTCGACATGCGTGGCTGCCGCGCGCTCGTCGCCCTGCCGGAGTCCATCG GCGGCCTGGCGGCTCTGACGGCCCTCGACCTGCGCGGCTGCCGAGCGCTG ACACGGCTGCCGCAGCGCGTCGTCGAGCTGACGGCGCTGCAGCGCATCGA CCTCCGCGACGAGTGCGGGGTGAAGGGGGTGCCAGCCACCTTCGTGCACG CGCCGGGGACCAGGTACTGGGAGCGCATCTACGCTGCGTATGCGACGGTG GCGCGCAAGCGCAGCTGA back to top
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