mRNA_6872 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151095
Unique NamemRNA_6872
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|151095 vs. uniprot
Match: A0A836CFH7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFH7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 6.030e-26
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1 
Query:    1 RNRHCSADGCKRQPSFGYDGRPPQFCAEHKYDGMANVVSRXXXXXXXXXXXXXXLPGERRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETRRRGSTASSSSAAQQD 543
            RNRHCSADGCKRQPSFGYDGRPPQFCAEHKYDGMANVVSRXXXXXXXXXXXXXXLPGERRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETRRRGSTASSSSAAQQD
Sbjct:    1 RNRHCSADGCKRQPSFGYDGRPPQFCAEHKYDGMANVVSRXXXXXXXXXXXXXXLPGERRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETRRRGSTASSSSAAQQD 181
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BLAST of jgi.p|Trimin1|151095 vs. uniprot
Match: A0A835ZB16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB16_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.630e-16
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 RNRHCSADGCKRQPSFGYDGRPPQFCAEHKYDGMANVVSRXXXXXXXXXXXXXXLPGERR 180
            RNRHC+A+GC RQPSFGYDG+PPQFCA HK  GM+NVVSRXXXXXXXXXXXXXXLPG+RR
Sbjct:  107 RNRHCTAEGCTRQPSFGYDGQPPQFCATHKVAGMSNVVSRXXXXXXXXXXXXXXLPGDRR 166
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BLAST of jgi.p|Trimin1|151095 vs. uniprot
Match: A0A836C8S2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.030e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   13 CSADGCKRQPSFGYDGRPPQFCAEHKYDGMANVVSR 120
            C+A GC+R+PS+ YDGR   +C +HK +GM N VSR
Sbjct:  134 CAASGCRRRPSYNYDGRRAAYCHKHKAEGMTNQVSR 169
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BLAST of jgi.p|Trimin1|151095 vs. uniprot
Match: A0A835ZIM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIM1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.090e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   13 CSADGCKRQPSFGYDGRPPQFCAEHKYDGMANVVSR 120
            C+ADGC +QPSFG+ G  P+FCA HK  GM +V ++
Sbjct:    9 CNADGCDKQPSFGFIGEKPKFCATHKLGGMTDVKNK 44
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151095 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CFH7_9STRA6.030e-26100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZB16_9STRA9.630e-1685.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8S2_9STRA4.030e-555.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZIM1_9STRA4.090e-555.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:61544..62816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151095|gw1.27.154.1
Max annot lvl10239|Viruses
EggNOG OGs4QCFE@10239|Viruses,4QUWG@35237|dsDNA viruses no RNA stage
Evalue0.000778
Seed ortholog654926.Q8QNQ2_ESV1K
Hectar predicted targeting categoryother localisation
TranscriptId151417
TrackFilteredModels1
ProteinId151095
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151095gene_6872Tribonema minus UTEX_B_3156 geneContig_27 61544..62816 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6872_1exon_6872_1Tribonema minus UTEX_B_3156 exonContig_27 61544..61969 +
exon_6872_2exon_6872_2Tribonema minus UTEX_B_3156 exonContig_27 62700..62816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6872CDS_6872Tribonema minus UTEX_B_3156 CDSContig_27 61544..61969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151095Trimin1|151095|gw1.27.154.1Tribonema minus UTEX_B_3156 polypeptideContig_27 61544..62816 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6872 ID=mRNA_6872|Name=jgi.p|Trimin1|151095|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_27:61544..62816+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCAACCGGCACTGCAGCGCGGACGGCTGCAAGCGGCAGCCGAGCTTCGG
CTACGACGGGCGCCCGCCGCAGTTCTGCGCCGAGCACAAGTACGACGGCA
TGGCGAACGTGGTGAGCCGCCGCTGCGACGCGCCCGACTGCAAGCGCCAG
CCCATCTACGGCCTGCCGGGCGAGCGGCGCCCGCGCTTCTGCTCGTCGCA
CAAGGGCGCGGACATGATCGACATCAAGAACCGGCGCTGCGAGGCGGAGG
GGTGCTCGACGCACCCGACGTACGGGTTCGCGGGCCAGAAGCGGCGCTTC
TGCGGCGCGCACAAGCTGGAGGGCATGCTGGACTTTAAGAGCAGCCGCTG
CAGCACGCCGGGGTGCCCGCGGAGGCCGAGCTACGCGTTCCCGGGGAAGC
GCGCGTCGCGGTGCAGCGGCCACAAGGTGATGGGCATGATCGACGTCAAG
CACCGCCACTGCGAGGCGCCCAACTGCAGCAAGCGCGTGGAGACGCGCCG
CCGCGGCAGCACCGCGTCCTCGTCCTCCGCGGCTCAGCAGGAC
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protein sequence of jgi.p|Trimin1|151095

>Trimin1|151095|gw1.27.154.1 ID=Trimin1|151095|gw1.27.154.1|Name=jgi.p|Trimin1|151095|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp
RNRHCSADGCKRQPSFGYDGRPPQFCAEHKYDGMANVVSRRCDAPDCKRQ
PIYGLPGERRPRFCSSHKGADMIDIKNRRCEAEGCSTHPTYGFAGQKRRF
CGAHKLEGMLDFKSSRCSTPGCPRRPSYAFPGKRASRCSGHKVMGMIDVK
HRHCEAPNCSKRVETRRRGSTASSSSAAQQD
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mRNA from alignment at Contig_27:61544..62816+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6872 ID=mRNA_6872|Name=jgi.p|Trimin1|151095|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1273bp|location=Sequence derived from alignment at Contig_27:61544..62816+ (Tribonema minus UTEX_B_3156 )
CGCAACCGGCACTGCAGCGCGGACGGCTGCAAGCGGCAGCCGAGCTTCGG
CTACGACGGGCGCCCGCCGCAGTTCTGCGCCGAGCACAAGTACGACGGCA
TGGCGAACGTGGTGAGCCGCCGCTGCGACGCGCCCGACTGCAAGCGCCAG
CCCATCTACGGCCTGCCGGGCGAGCGGCGCCCGCGCTTCTGCTCGTCGCA
CAAGGGCGCGGACATGATCGACATCAAGAACCGGCGCTGCGAGGCGGAGG
GGTGCTCGACGCACCCGACGTACGGGTTCGCGGGCCAGAAGCGGCGCTTC
TGCGGCGCGCACAAGCTGGAGGGCATGCTGGACTTTAAGAGCAGCCGCTG
CAGCACGCCGGGGTGCCCGCGGAGGCCGAGCTACGCGTTCCCGGGGAAGC
GCGCGTCGCGGTGCAGCGGCCACAAGGTGAGCTTGCGATGACTGTGCTTG
GTAGCGGTGTTGGCGAGCTTCGCGTTGCGTGGTACGTGTGGGGGTGGTGG
TCGCGCGAGACGCGAAGGCCGTGCTGGACTGGCTCTGCCGCAAGGCACGC
ATGGGGTTTCGTGGGTACTTGTGAACAATGTAGTAATCGCGGCAAGACCA
GTAGCTGCTGTAGGACAACAGTGGTGAAACCTGCAAGCACAAAAACTCCG
CGAATCGCAGTGGGTACGGGAGCAACTGCCACTTTTGATCCGCCAAACAG
TTGTGATGTTGAGGCCACTAGTGCCCAATTATTTTGGCTCAACAGGCCCG
CAGCTTACAGCGTGCCATGCAGCAGTGCAGCGCTGCATGTGTGGCACGGG
CAATACTCGTGCACCTCAGAGCTCAGCAGCAAGTGCCACTTTTGAACCAC
CACTTGTGGCAGGGAAAATCGTTTCTGGCAATGCTCAACACACCAGCAAG
TGTGACTCCCATGGGCGGCGCAGGTGCTGATGCTCTACCCGTTGCCGAAA
GAACGTGTCACCGCGCATTTGAATAATTGGCGAGTGTCTGATAGCTGTCG
CCTCAGGCATTGTGCGCGCGTGTGCACCGAAAATTGATGAATAGCTGAGC
ATCTGATAGCTGTCGCCTCACACACTGCGCGCGCGCGCACCGCCACCCGC
GAGCACAAGCGCTCACACGCGACAACGCGCCAACCATCAATCGCCGCGCG
CCGCAGGTGATGGGCATGATCGACGTCAAGCACCGCCACTGCGAGGCGCC
CAACTGCAGCAAGCGCGTGGAGACGCGCCGCCGCGGCAGCACCGCGTCCT
CGTCCTCCGCGGCTCAGCAGGAC
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Coding sequence (CDS) from alignment at Contig_27:61544..62816+

>mRNA_6872 ID=mRNA_6872|Name=jgi.p|Trimin1|151095|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=543bp|location=Sequence derived from alignment at Contig_27:61544..62816+ (Tribonema minus UTEX_B_3156 )
CGCAACCGGCACTGCAGCGCGGACGGCTGCAAGCGGCAGCCGAGCTTCGG
CTACGACGGGCGCCCGCCGCAGTTCTGCGCCGAGCACAAGTACGACGGCA
TGGCGAACGTGGTGAGCCGCCGCTGCGACGCGCCCGACTGCAAGCGCCAG
CCCATCTACGGCCTGCCGGGCGAGCGGCGCCCGCGCTTCTGCTCGTCGCA
CAAGGGCGCGGACATGATCGACATCAAGAACCGGCGCTGCGAGGCGGAGG
GGTGCTCGACGCACCCGACGTACGGGTTCGCGGGCCAGAAGCGGCGCTTC
TGCGGCGCGCACAAGCTGGAGGGCATGCTGGACTTTAAGAGCAGCCGCTG
CAGCACGCCGGGGTGCCCGCGGAGGCCGAGCTACGCGTTCCCGGGGAAGC
GCGCGTCGCGGTGCAGCGGCCACAAGGTGATGGGCATGATCGACGTCAAG
CACCGCCACTGCGAGGCGCCCAACTGCAGCAAGCGCGTGGAGACGCGCCG
CCGCGGCAGCACCGCGTCCTCGTCCTCCGCGGCTCAGCAGGAC
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