Trimin1|354554|estExt_Genemark1.C_Ctg_2690006 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354554
Unique NameTrimin1|354554|estExt_Genemark1.C_Ctg_2690006
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length247
Homology
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Match: A0A835Z7Q2_9STRA (Proteasome complex subunit Rpn13 ubiquitin receptor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q2_9STRA)

HSP 1 Score: 355 bits (910), Expect = 1.360e-121
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MSGGAFGGGDAAKTLVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCLGDNPPSAPPAEGDSLTNMIRALGTGQGAGXXXXXXXXXXXXXXXXXXXLSTMGFNAAQQQXXXXXXXXXXXXXXXXGEETAEGGRSTDQPPPGEG 221
            MSGGAFGGGDAAKTLVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCLGDNPPSAPPAEGDSLTNMIRALGTGQGAGXXXXXXXXXXXXXXXXXXXLSTMGFNAAQQQXXXXXXXXXXXXXXXXGEETAEGGRSTDQPPPGEG
Sbjct:    1 MSGGAFGGGDAAKTLVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCLGDNPPSAPPAEGDSLTNMIRALGTGQGAGXXXXXXXXXXXXXXXXXXXLSTMGFNAAQQQXXXXXXXXXXXXXXXXGEETAEGGRSTDQPPPGEG 221          
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Match: A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.250e-41
Identity = 83/144 (57.64%), Postives = 104/144 (72.22%), Query Frame = 0
Query:   14 TLVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVR-GQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCLGDNP------PSAPPAEGDSLTNMIRALGT 150
            T VSFKAGKL  KE + GKF++ P  RKG++ V++   DQL+ FQW+DRV+ AVVDD+IVMP ++EFTKV+TGR QDRVYLLQ+KNS RRFFYWMQDK A KD +    V  CL   P       +APPA  D L+ +IR+LG+
Sbjct:    3 TFVSFKAGKLQDKEGAAGKFTITPDKRKGQITVLKDAMDQLMRFQWQDRVTRAVVDDIIVMPGDMEFTKVDTGRPQDRVYLLQMKNSTRRFFYWMQDKSADKDAEYLAAVQACLEGKPIPAATGGAAPPAA-DGLSEVIRSLGS 145          
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Match: A0A225VQZ1_9STRA (Proteasomal ubiquitin receptor ADRM1 (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VQZ1_9STRA)

HSP 1 Score: 145 bits (367), Expect = 9.080e-40
Identity = 73/150 (48.67%), Postives = 99/150 (66.00%), Query Frame = 0
Query:   15 LVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCLGDNPPSAPPAEG------------DSLTNMIRALGTGQ 152
            LVSF AGK+  K S+ GKF V PQ  KG+V + RG DQL+HFQW DR + A  +D I+ PD+  F KV+TGR  DRVY+LQ KNS+RRFF+WMQ+KDA++DE+L K V  C+  N  +A  +EG            +++  M+ A+G G+
Sbjct:   23 LVSFNAGKMSVKASANGKFLVTPQLEKGKVCLSRGDDQLLHFQWMDRQTGASPEDFIIFPDDAHFAKVDTGRVDDRVYILQYKNSSRRFFFWMQNKDASRDEELVKKVNDCMN-NAQAATSSEGGRGSGNNVQLDHNAIMQMLGAMGAGE 171          
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Match: A0A484EDV8_BRELC (Pru domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDV8_BRELC)

HSP 1 Score: 146 bits (368), Expect = 7.010e-39
Identity = 72/150 (48.00%), Postives = 98/150 (65.33%), Query Frame = 0
Query:   15 LVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCL-----------GDNPPSAPPAEGDSLTNMIRALGTGQG 153
            LVSF AGK+  K ++ GKF V PQ  KG+V + RG DQL+HFQW DR + A  +D I+ PD+  F KV TGRS DRVY+LQ KNS+RRFF+WMQ+KDAT+D++L K V  C+           G  P +    + +++  M+ A+G G+G
Sbjct:   23 LVSFNAGKMTVKPTTNGKFMVTPQLEKGKVCLSRGDDQLLHFQWVDRQTGASPEDFIIFPDDAHFAKVETGRSDDRVYILQYKNSSRRFFFWMQNKDATRDQELVKKVNDCMNNAQAVASSDGGRVPGNNVQLDHNAIMQMLGAMGAGEG 172          
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Match: A0A2P4XC10_9STRA (Proteasomal ubiquitin receptor ADRM1-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XC10_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.640e-37
Identity = 72/149 (48.32%), Postives = 97/149 (65.10%), Query Frame = 0
Query:   15 LVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCLGDNPPSAPPAEG------------DSLTNMIRALGTG 151
            LVSF AGK+  K S+ GKF V PQ  KG+V + RG DQL+HFQW DR + A  +D I+ PD+  F KV+TGR  DRVY+LQ KNS+RRFF+WMQ+KD+++DE+L K V  C+  N  +A   EG            +++  M+ A+G G
Sbjct:    7 LVSFNAGKMTVKPSANGKFLVTPQLEKGKVCLSRGDDQLLHFQWVDRQTGASPEDFIIFPDDAHFAKVDTGRPDDRVYILQYKNSSRRFFFWMQNKDSSRDEELVKKVNDCMN-NAQAASSNEGGRGTGNNVQLDHNAIMQMLGAMGAG 154          
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Match: A0A0P1A6U7_PLAHL (Proteasomal ubiquitin receptor adrm1-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6U7_PLAHL)

HSP 1 Score: 144 bits (363), Expect = 6.770e-37
Identity = 73/151 (48.34%), Postives = 98/151 (64.90%), Query Frame = 0
Query:   15 LVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCLGDNPPSAPPAEG------------DSLTNMIRALGTGQG 153
            LVSF AGK+ AK ++ GKF V PQ  KG+V + RG DQL+HFQW DR + A  +D I+ PD+  F KV TGR  DRVY+LQ KNS+RRFF+WMQ+KDA++D++L K V  C+  N  +A   EG            +++  M+ A+G G G
Sbjct:   23 LVSFNAGKMTAKPTANGKFVVTPQLEKGKVCLSRGDDQLLHFQWVDRQTGASPEDFIIFPDDAHFAKVETGRPDDRVYILQYKNSSRRFFFWMQNKDASRDQELVKKVNDCMN-NAQAATSNEGGRGSGNNVQLDHNAIMQMLGAMGAGDG 172          
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Match: G5A4A0_PHYSP (Pru domain-containing protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=G5A4A0_PHYSP)

HSP 1 Score: 140 bits (353), Expect = 6.900e-37
Identity = 72/154 (46.75%), Postives = 100/154 (64.94%), Query Frame = 0
Query:   15 LVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCL------------GDNPPSAPPAEGDSLTNMIRALGTG-QGAG 155
            LVSF AGK+  K ++ GKF V PQ  KG+V + RG DQL+HFQW DR + A  +D I+ PD+  F KV+TGR +DRV++LQ KNS+RRFF+WMQ+KDA++DE+L K V  C+            G +  S    + +++  M+ A+G G QG G
Sbjct:   23 LVSFNAGKMTVKPTANGKFLVTPQLEKGKVCLSRGDDQLLHFQWVDRQTGASPEDFIIFPDDAHFAKVDTGRPEDRVFILQYKNSSRRFFFWMQNKDASRDEELVKKVNDCMNNAQAXXXXDGGGRSAGSNVQLDHNAIMQMLGAMGAGDQGRG 176          
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Match: A0A2D4CBZ9_PYTIN (Proteasomal ubiquitin receptor ADRM1like protein put n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBZ9_PYTIN)

HSP 1 Score: 144 bits (362), Expect = 1.960e-36
Identity = 72/132 (54.55%), Postives = 92/132 (69.70%), Query Frame = 0
Query:    3 GGAFGGGDAA--KTLVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCLGDNPPS 132
            G  FGG + A    LVSF AGK+  K S+ GKF V P  +KG++ + RG DQL+HFQW DR + A  DD I+ PD+  F+KVNTGR  DRVYLLQ KNS+RRFF+WMQ KDA++DE+LAK V   + +  P+
Sbjct:    9 GSVFGGSNGAGRNELVSFNAGKMTVKPSANGKFLVTPDLKKGKICLTRGDDQLLHFQWVDRQTGASPDDFILFPDDAAFSKVNTGREGDRVYLLQYKNSSRRFFFWMQHKDASRDEELAKKVNDYMNNAQPA 140          
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Match: A0A7S4DHA9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHA9_HETAK)

HSP 1 Score: 135 bits (339), Expect = 3.570e-36
Identity = 65/124 (52.42%), Postives = 84/124 (67.74%), Query Frame = 0
Query:   15 LVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCLGDNPPSAPPAEG 138
            LV FKAGK++ +     KF + P  RKGEV + +G DQL+HFQWKDR + A+VDDLI+ PD+  F +V TG+ +DRVYLLQ K S RRFF+WMQDKD  KD +    V + +  NP +AP   G
Sbjct:   23 LVKFKAGKMEMQSKGDNKFLIVPDLRKGEVSLFKGDDQLLHFQWKDRKTQALVDDLILFPDDAVFKRVKTGKEEDRVYLLQYKGSDRRFFFWMQDKDGAKDAEHCADVNKYMS-NPDAAPGGAG 145          
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Match: A0A0W8C9E4_PHYNI (Proteasomal ubiquitin receptor ADRM1 n=15 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9E4_PHYNI)

HSP 1 Score: 142 bits (358), Expect = 4.360e-36
Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 0
Query:   15 LVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQDQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSARRFFYWMQDKDATKDEQLAKTVTQCLGDNPPSAPPAEG------------DSLTNMIRALGTG 151
            LVSF AGK+  K ++ GKF V PQ  KG+V + RG DQL+HFQW DR + A  +D I+ PD+  F KV+TGR  DRVY+LQ KNS+RRFF+WMQ+KDA++DE+L K V  C+  N  +A  ++G            +++  M+ A+G G
Sbjct:   23 LVSFNAGKMTVKPTANGKFLVTPQLEKGKVCLSRGDDQLLHFQWVDRQTGASPEDFIIFPDDAHFAKVDTGRPDDRVYILQYKNSSRRFFFWMQNKDASRDEELVKKVNDCMN-NAQAASSSDGSRGSGNNVQLDHNAIMQMLGAMGAG 170          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354554 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7Q2_9STRA1.360e-121100.00Proteasome complex subunit Rpn13 ubiquitin recepto... [more]
A0A835Z3T3_9STRA1.250e-4157.64DNA topoisomerase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A225VQZ1_9STRA9.080e-4048.67Proteasomal ubiquitin receptor ADRM1 (Fragment) n=... [more]
A0A484EDV8_BRELC7.010e-3948.00Pru domain-containing protein n=1 Tax=Bremia lactu... [more]
A0A2P4XC10_9STRA1.640e-3748.32Proteasomal ubiquitin receptor ADRM1-like protein ... [more]
A0A0P1A6U7_PLAHL6.770e-3748.34Proteasomal ubiquitin receptor adrm1-like protein ... [more]
G5A4A0_PHYSP6.900e-3746.75Pru domain-containing protein (Fragment) n=2 Tax=P... [more]
A0A2D4CBZ9_PYTIN1.960e-3654.55Proteasomal ubiquitin receptor ADRM1like protein p... [more]
A0A7S4DHA9_HETAK3.570e-3652.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0W8C9E4_PHYNI4.360e-3647.65Proteasomal ubiquitin receptor ADRM1 n=15 Tax=Phyt... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 180..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..147
NoneNo IPR availableCDDcd13314PH_Rpn13coord: 16..126
e-value: 1.04544E-41
score: 136.245
IPR044868Rpn13/ADRM1, Pru domainPFAMPF04683Proteasom_Rpn13coord: 30..109
e-value: 6.4E-23
score: 81.1
IPR044868Rpn13/ADRM1, Pru domainPROSITEPS51917PRUcoord: 10..129
score: 41.302589
IPR038633Proteasomal ubiquitin receptor Rpn13/ADRM1, Pru domain superfamilyGENE3D2.30.29.70Proteasomal ubiquitin receptor Rpn13/ADRM1coord: 10..130
e-value: 5.6E-33
score: 115.3
IPR006773Proteasomal ubiquitin receptor Rpn13/ADRM1PANTHERPTHR12225ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEINcoord: 12..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_269contigContig_269:45806..56674 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354554mRNA_18512Tribonema minus UTEX_B_3156 mRNAContig_269 45592..56685 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354554|estExt_Genemark1.C_Ctg_2690006 ID=Trimin1|354554|estExt_Genemark1.C_Ctg_2690006|Name=jgi.p|Trimin1|354554|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=247bp
MSGGAFGGGDAAKTLVSFKAGKLDAKESSGGKFSVKPQDRKGEVHVVRGQ
DQLIHFQWKDRVSNAVVDDLIVMPDELEFTKVNTGRSQDRVYLLQVKNSA
RRFFYWMQDKDATKDEQLAKTVTQCLGDNPPSAPPAEGDSLTNMIRALGT
GQGAGGAGAGGAGGQVNLQDLQSILSTMGFNAAQQQAQQQQQAQQQQEGQ
PSGEETAEGGRSTDQPPPGEGGEGDQNEGGANPDTPPNPPNPPPQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR044868Rpn13/ADRM1_Pru
IPR038633Rpn13/ADRM1_Pru_sf
IPR006773Rpn13/ADRM1