mRNA_18511 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154319
Unique NamemRNA_18511
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154319 vs. uniprot
Match: A0A835YXY6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY6_9STRA)

HSP 1 Score: 277 bits (709), Expect = 2.330e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 
Query:    1 VQEGLCELAFTVGPRERHAFEEAQRYLAGTSQPHLAMLDFDLSGAARLDVRLWARAGTGAGVFVSVRVERAPPNHVVANAQKAREQIAARAGGAIVGHPRLDLELHCAALGRNGGGAPVVEALAAAYGLEDSRALHAAGYER 426
            VQEGLCELAFTVGPRERHAFEEAQRYLAGTSQPHLAMLDFDLSGAARLDVRLWARAGTGAGVFVSVRVERAPPNHVVANAQKAREQIAARAGGAIVGHPRLDLELHCAALGRNGGGAPVVEALAAAYGLEDSRALHAAGYER
Sbjct:    1 VQEGLCELAFTVGPRERHAFEEAQRYLAGTSQPHLAMLDFDLSGAARLDVRLWARAGTGAGVFVSVRVERAPPNHVVANAQKAREQIAARAGGAIVGHPRLDLELHCAALGRNGGGAPVVEALAAAYGLEDSRALHAAGYER 142
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154319 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YXY6_9STRA2.330e-94100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_269contigContig_269:40535..40960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154319|gw1.269.14.1
Hectar predicted targeting categoryother localisation
TranscriptId154641
TrackFilteredModels1
ProteinId154319
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154319gene_18511Tribonema minus UTEX_B_3156 geneContig_269 40535..40960 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18511_1exon_18511_1Tribonema minus UTEX_B_3156 exonContig_269 40535..40960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18511CDS_18511Tribonema minus UTEX_B_3156 CDSContig_269 40535..40960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154319Trimin1|154319|gw1.269.14.1Tribonema minus UTEX_B_3156 polypeptideContig_269 40535..40960 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18511 ID=mRNA_18511|Name=jgi.p|Trimin1|154319|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=426bp|location=Sequence derived from alignment at Contig_269:40535..40960+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCAGGAGGGCCTCTGCGAGCTGGCCTTCACGGTCGGGCCGCGCGAGCG
CCACGCCTTCGAGGAGGCCCAGCGCTACCTCGCCGGCACCTCGCAGCCGC
ACCTGGCCATGCTCGACTTCGACCTCAGCGGCGCCGCGCGCCTGGACGTG
CGCCTCTGGGCGCGCGCCGGCACCGGCGCCGGCGTCTTCGTGAGCGTCCG
CGTAGAGCGCGCGCCGCCCAACCACGTCGTCGCCAACGCGCAAAAAGCGC
GAGAGCAGATAGCGGCGCGCGCGGGCGGCGCTATCGTAGGCCACCCGCGG
CTCGATCTGGAGCTGCACTGCGCGGCGCTGGGGAGGAATGGCGGCGGCGC
GCCGGTGGTGGAGGCGCTGGCGGCGGCGTACGGGCTGGAGGATTCGCGCG
CGCTGCACGCCGCGGGGTACGAGCGC
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protein sequence of jgi.p|Trimin1|154319

>Trimin1|154319|gw1.269.14.1 ID=Trimin1|154319|gw1.269.14.1|Name=jgi.p|Trimin1|154319|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=142bp
VQEGLCELAFTVGPRERHAFEEAQRYLAGTSQPHLAMLDFDLSGAARLDV
RLWARAGTGAGVFVSVRVERAPPNHVVANAQKAREQIAARAGGAIVGHPR
LDLELHCAALGRNGGGAPVVEALAAAYGLEDSRALHAAGYER
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mRNA from alignment at Contig_269:40535..40960+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18511 ID=mRNA_18511|Name=jgi.p|Trimin1|154319|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=426bp|location=Sequence derived from alignment at Contig_269:40535..40960+ (Tribonema minus UTEX_B_3156 )
GTGCAGGAGGGCCTCTGCGAGCTGGCCTTCACGGTCGGGCCGCGCGAGCG
CCACGCCTTCGAGGAGGCCCAGCGCTACCTCGCCGGCACCTCGCAGCCGC
ACCTGGCCATGCTCGACTTCGACCTCAGCGGCGCCGCGCGCCTGGACGTG
CGCCTCTGGGCGCGCGCCGGCACCGGCGCCGGCGTCTTCGTGAGCGTCCG
CGTAGAGCGCGCGCCGCCCAACCACGTCGTCGCCAACGCGCAAAAAGCGC
GAGAGCAGATAGCGGCGCGCGCGGGCGGCGCTATCGTAGGCCACCCGCGG
CTCGATCTGGAGCTGCACTGCGCGGCGCTGGGGAGGAATGGCGGCGGCGC
GCCGGTGGTGGAGGCGCTGGCGGCGGCGTACGGGCTGGAGGATTCGCGCG
CGCTGCACGCCGCGGGGTACGAGCGC
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Coding sequence (CDS) from alignment at Contig_269:40535..40960+

>mRNA_18511 ID=mRNA_18511|Name=jgi.p|Trimin1|154319|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=426bp|location=Sequence derived from alignment at Contig_269:40535..40960+ (Tribonema minus UTEX_B_3156 )
GTGCAGGAGGGCCTCTGCGAGCTGGCCTTCACGGTCGGGCCGCGCGAGCG
CCACGCCTTCGAGGAGGCCCAGCGCTACCTCGCCGGCACCTCGCAGCCGC
ACCTGGCCATGCTCGACTTCGACCTCAGCGGCGCCGCGCGCCTGGACGTG
CGCCTCTGGGCGCGCGCCGGCACCGGCGCCGGCGTCTTCGTGAGCGTCCG
CGTAGAGCGCGCGCCGCCCAACCACGTCGTCGCCAACGCGCAAAAAGCGC
GAGAGCAGATAGCGGCGCGCGCGGGCGGCGCTATCGTAGGCCACCCGCGG
CTCGATCTGGAGCTGCACTGCGCGGCGCTGGGGAGGAATGGCGGCGGCGC
GCCGGTGGTGGAGGCGCTGGCGGCGGCGTACGGGCTGGAGGATTCGCGCG
CGCTGCACGCCGCGGGGTACGAGCGC
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