mRNA_18441 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354539
Unique Name	mRNA_18441
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354539 vs. uniprot
Match: A0A836CFN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFN5_9STRA)

HSP 1 Score: 235 bits (599), Expect = 1.160e-72
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 1

Query:    1 MWGMCSATAEPPAAAAAAEEGAEADVEVEVEAXXXXXXXXXXXXXXXXXXXXVLAKLDKLRESMARFQAVKQKVARSERAWHAVSAASAAASGWHGPSACGARCSPPLLQAXXXXXXXXXXXXXXXXXXXXXXXXXXSALGVDPEKRKAIREALLQRAERAVGSAKRAERAXXXXXXXAXXPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVAQRLLQRTAAVAMDGGDRSTLSS 753
            MWGMCSATAEPPAAAAAAEEGAEADVEVEVEAXXXXXXXXXXXXXXXXXXXXVLAKLDKLRESMARFQAVKQKVARSERAWHAVSAASAAASGWHGPSACGARCSPPLLQAXXXXXXXXXXXXXXXXXXXXXXXXXXSALGVDPEKRKAIREALLQRAERAVGSAKRAERAXXXXXXXAXXPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVAQRLLQRTAAVAMDGGDRSTLSS
Sbjct:    1 MWGMCSATAEPPAAAAAAEEGAEADVEVEVEAXXXXXXXXXXXXXXXXXXXXVLAKLDKLRESMARFQAVKQKVARSERAWHAVSAASAAASGWHGPSACGARCSPPLLQAXXXXXXXXXXXXXXXXXXXXXXXXXXSALGVDPEKRKAIREALLQRAERAVGSAKRAERAXXXXXXXAXXPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVAQRLLQRTAAVAMDGGDRSTLSS 251

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354539 vs. uniprot

BLAST of jgi.p|Trimin1|354539 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CFN5_9STRA	1.160e-72	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_266	contig	Contig_266:10513..15273 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354539\|estExt_Genemark1.C_Ctg_2660003
Hectar predicted targeting category	other localisation
TranscriptId	354861
Track	FilteredModels1
ProteinId	354539

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354539	gene_18441	Tribonema minus UTEX_B_3156	gene	Contig_266 10513..15273 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354539	Trimin1\|354539\|estExt_Genemark1.C_Ctg_2660003	Tribonema minus UTEX_B_3156	polypeptide	Contig_266 10513..14960 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_18441_1	exon_18441_1	Tribonema minus UTEX_B_3156	exon	Contig_266 10513..10526 +
exon_18441_2	exon_18441_2	Tribonema minus UTEX_B_3156	exon	Contig_266 11181..11259 +
exon_18441_3	exon_18441_3	Tribonema minus UTEX_B_3156	exon	Contig_266 11399..11580 +
exon_18441_4	exon_18441_4	Tribonema minus UTEX_B_3156	exon	Contig_266 12127..12182 +
exon_18441_5	exon_18441_5	Tribonema minus UTEX_B_3156	exon	Contig_266 13494..13660 +
exon_18441_6	exon_18441_6	Tribonema minus UTEX_B_3156	exon	Contig_266 13734..13763 +
exon_18441_7	exon_18441_7	Tribonema minus UTEX_B_3156	exon	Contig_266 14733..15273 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_18441	CDS_18441	Tribonema minus UTEX_B_3156	CDS	Contig_266 10513..10526 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_18441	UTR3_18441	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_266 14961..15273 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_266:10513..15273+
coding sequence from alignment at Contig_266:10513..15273+

spliced messenger RNA

>mRNA_18441 ID=mRNA_18441|Name=jgi.p|Trimin1|354539|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1069bp|location=Sequence derived from alignment at Contig_266:10513..15273+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGGCATGTGCAGCGCCACTGCGGAGCCGCCGGCAGCTGCCGCCGC
GGCGGAGGAGGGCGCCGAGGCAGATGTTGAAGTTGAAGTTGAAGCACCGG
CAGCTGCGACGGCAGCAGAGGAGGGCGCGGAGCCAGATATTGAAGTTGAT
GTTGAAGTACTGGCAAAGCTGGACAAGCTGCGGGAGTCCATGGCGCGCTT
CCAGGCGGTCAAGCAGAAGGTGGCGCGGTCGGAGCGCGCATGGCATGCGG
TGTCCGCCGCCTCCGCCGCCGCAAGCGGGTGGCACGGTCCGAGCGCGTGT
GGCGCGCGGTGTTCGCCGCCGCTGCTGCAAGCAGCGGCGCAGCAGCAGCG
CGTCAGCGGCGGCAGCAGCGGCAGCAGCAGCGGCGGCAGTAGCAGCAGCA
GCGGCGGCGGCAGCGCCCTTGGTGTGGACCCTGAGAAGCGCAAGGCCATC
AGGGAGGCGCTGCTGCAGCGCGCGGAGAGGGCCGTTGGCAGCGCTAAGCG
CGCGGAGAGGGCCGCTGGCGGCGCTCAGCGCGCCGCCGCGGCGCCAGCGG
CAAAGGCAGCCGCCCCGTCAGCAGCGGCGGCATCAGCTGCGCCGGCTGCC
GGCAGCAGCGGCAGCAGCACTGGCGGCGGCAGCGGCGGCGGCGGCGGCAG
CAGCGGCGACGGCGACGACCGCCGCCGCAGCGTTGCGCAGCGGCTGCTGC
AGCGCACCGCAGCGGTGGCGATGGACGGCGGCGACCGCAGCACGCTGAGC
AGCTGATGCAGCGATGAAACTGTCAATTACGGGCGCGAGCTTGCGAGTGG
CGCACGATGTGCAGAGGTTCCCGCTGGTGCGGGGCAACGCCCATGCAGAT
GCTGGCGTTGCGCTGCACCGTTGCAAGCTGCGCCTGCGGCAGAACCGGCA
AGCGGGGAAGATTTAATGCCCTGCGCGCATGATTTCAGCATGGCAGCGAC
GGCAGCTCGGCTTGTGAGCGTCTGCAACGTGCAGCGACTCCCACTGTAGT
GGCGGCAACTGCGGCAGCGGCAGCACTAGCGGCGGGTGAAGTGAAACTGT
GCTGTGTCTTGAAAAACAT

protein sequence of jgi.p|Trimin1|354539

>Trimin1|354539|estExt_Genemark1.C_Ctg_2660003 ID=Trimin1|354539|estExt_Genemark1.C_Ctg_2660003|Name=jgi.p|Trimin1|354539|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=252bp
MWGMCSATAEPPAAAAAAEEGAEADVEVEVEAPAAATAAEEGAEPDIEVD
VEVLAKLDKLRESMARFQAVKQKVARSERAWHAVSAASAAASGWHGPSAC
GARCSPPLLQAAAQQQRVSGGSSGSSSGGSSSSSGGGSALGVDPEKRKAI
REALLQRAERAVGSAKRAERAAGGAQRAAAAPAAKAAAPSAAAASAAPAA
GSSGSSTGGGSGGGGGSSGDGDDRRRSVAQRLLQRTAAVAMDGGDRSTLS
S*

mRNA from alignment at Contig_266:10513..15273+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_18441 ID=mRNA_18441|Name=jgi.p|Trimin1|354539|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4761bp|location=Sequence derived from alignment at Contig_266:10513..15273+ (Tribonema minus UTEX_B_3156 )
ATGTGGGGCATGTGGTGAGTCTGCTCGATTCCGAGCGTACAGTCCACGAC
AAAAGGGGCACTTGAACTCAGAATTAAAGTTCAACAACGTGTTTTTTGCA
ACCCTCTGGAGTCACACCGGTGCGCCATTGCTCAACAACACGCCGCCATT
TCCGCCGCATTCGCCCTCTCCGACCACCTGGCATGTTCAGTGAGCAGGCA
AGATGAAACCCCACGCACAAGTTCACACAGAGACGCAGTCCGGCTCCACA
AGCACAGGTGCCCGTCCCCAAAAAAAAAGGCGCGCTCGTGGTCTTGCCTC
CGCGTCAGCAGCGCTCAGCACCGTGCCACCCCCATCGCCACTTGCCCGCC
ATGGTCAGACCACATCACACCAGCGCATTGATTGTGCACCGTTCCGATGA
CATGTCTCTCCGATGCACCATTGCTCAACTGCACGCCGCCGTCACTGTCA
CGTCCGCCCCTGCCAATCACTCAGTGTCCTTGGTGAGCAGGCAAGATACG
CGCTGCGCAATCTGGCTGCACGATCGCAGGTGCCCGTCTCACGCAGTTCA
GCGTCACCGCTGTGGCAGCAGCACTCAACAGCAGCAGCGCTCGCCGCCAC
TTGTCCGCCAGACAGCCAGACCGAACCAGACCAGTGCATTAATTGTTCGT
GTCGCGTTTCCGCTGCAGCAGCGCCACTGCGGAGCCGCCGGCAGCTGCCG
CCGCGGCGGAGGAGGGCGCCGAGGCAGATGTTGAAGTTGAAGTTGAAGTG
CAGTCTGATGTTGCTCAACAGCAGCAGCAGTCGACACCACGCAACCTTCA
CCGCCTCTTGTATACCATAGCTAGGCCATCTCACACCAGCACATTGATTC
TGGTTGCATCTCCAATGCAGCAGCGCCACTGCAGAGGCACCGGCAGCTGC
GACGGCAGCAGAGGAGGGCGCGGAGCCAGATATTGAAGTTGATGTTGAAG
TACTGGCAAAGCTGGACAAGCTGCGGGAGTCCATGGCGCGCTTCCAGGCG
GTCAAGCAGAAGGTGGCGCGGTCGGAGCGCGCATGGCATGCGGTGTCCGC
CGCCTCCGCCGCCGCAAGGTCAGCAGCGCTCAGATTGAACTTAGTGCGGC
AAGCGTTATAACTAATTTACGCATTTATAAGGAAATACATACATACATAC
ATATATATGTTGAAGGCGGCACGGTCAGAGCGCGCGTGGCACGCGGGGTC
TGCTGCCTCTGCCGCCGCGCCTTCAAGGTCAGCAACGCTCGCGTTACATA
TATACGTGCAGGTATCGACGCTTGTGCTCCGAAAGTATACATTCTTCGCG
TAGAAAGCAGCGCCGTCGGAGCGCGCGTGGCACGCGCTGTCCGCTGCCGC
TGCTGCAAGGTCAGCAATGTGTGGACTGATACTTGCATGCAAAGGTTCTT
ACGCTTGGTAAATAAACAAACACTTATTTATAGGTAAACAAGTACATACA
TATGTAGAAGGTGGCGCGGTTGGAGCCGCGTGGCACACGGTGTCCGCCGC
CGCCGCTGCTGCAAGGTCAGGTTGAACCGAGCACGCAAAGGTTCTAACGC
TTGTAATGAATACACACACACATACATACATACACACGTACATGCATACA
CACATAACGTACAGCGGGTGGCACGGTCCGAGCGCGTGTGGCGCGCGGTG
TTCGCCGCCGCTGCTGCAAGGTAAGCAACACTCGGATTGAATTAAGCATG
CAAAGTTTCCAGCGCTTGATACACAGAAGTCAACGTGGCACGCGGTGTCC
GCCGCCGCGAAAAACCGCCGCGCGGTGCCCCAGCAAAACAGCAATCGTAT
GGGGCCTTTTGTGTGGTGCGAATGGTGTCTGATACAGGCGAGCCTAGTTT
AAGCCTGGGGATACAAAGGCTTGATTCGATTAGCTTGTCAGAGTTATTCA
AACGCCTGTTCTAATTAGGTGCCCCGCCGGCTTAAATAGCGACATGACGG
TACGCATGCAAGTATTCGGTTTCAACACTTGTATACTTCAAAGAACTACA
CACATTCATGCGTAAAAGCCGGCCAGTAGGAGTGCGCGTGGGACGCGATG
CCCGCCGCCGCTGTCGCCACGCCTTCAAGGTCAGCACCACTCGTCTTGAG
ATATTGGGTTGCACATGCGCACAAAAGGTGTGGCCCTTGCATACGTACAT
CCATACGCATCGAATCAGGTGGCACGCCACGTACCCGATCGCGATGAAGT
CGGAGCGCACAAATTTACGCCGCGCCCACAAGTGCCAACACCGTCTTAGC
GTGCGCGCGAACGATCATATGCTGGCCGCTGATCGCGCACTAACGCTAAC
CCTAACCCTAAGTATCCCAGGTTATTGGATGCAGCGGGGGTTTAGGCCAT
CTTGGCACAAACTGAAAAAAATCCGCAGGGGGCCTCGGGGGGGGGGGGGG
GGGGGGGGGGCAGCCGAATGATCCTGGTGCGCAGAACACAAACATGGTAC
ACCAAGCTGGTACGCTGAAGTCAGAGTTTTCAGCAATTCTGGCACCTAGT
GGAGCCAGAAACCAGAACCTTGTGAGGGACACAGAGAGGGGGGGCAGCAA
TAAGCCTGGTATGCAAATCACACGCACCCTGAGAGCGGATCACAGCTGTG
CGGCAAAAAAAAACTACCCGCTGACAGAGCTTGCTGCAATTTGTGATAAT
GGGCGATGGAAACGCAGCTGTGCGGCAAAAAAGCCACCCACGCTCAAGGC
GACACGTTGAAAGAGCTTGCTGCAATTCTGCAACAACTGGACAAGCAAGC
AAGCAAGCATATCCTGCAATAAAAGGATGCTTGAAAATGTGCGCCGACTC
GTCTCTAATGCGTCTCGCTCTATGCACACTTTGCTGATAAAAACTCTGCT
CTGACAGGACCCCCCATGTGCCTTGCCGTATGCATGCATGCACACTTCGC
GCGTCCACAGGCCTGCACCCCCCCCAGTCACACATCACGCAACATCAGCA
GCGGCCGTGAATGGCTCCGCAACGCCAACAGCAGCGGCGCAGCAGCAGCG
CGTCAGCGGCGGCAGCAGCGGCAGCAGCAGCGGCGGCAGTAGCAGCAGCA
GCGGCGGCGGCAGCGCCCTTGGTGTGGACCCTGAGAAGCGCAAGGCCATC
AGGGAGGCGCTGCTGCAGCGCGCGGAGAGGGCCGTTGGCAGCGCTAAGGT
GAGCGCTGCATTGTGAATTCATGAATTCATGATCATGAACTTGTTTCATG
GACAGGAAGGCGCTGCTGCAGCGCGCGGAGAGGGCCGCTGGCGGCGCTCA
GGTGCACGCTGCATCATAATTTCATGATCATGAATCCACATTCATGAATT
TGTGTCATGGACAGGGAGGCAGTGCTGCAGGGCATGGACAGGGCCGCTGG
CGGCGCTCAGATGAGCACTGCATCATGAATGCATGCTCATTGTCATGAAC
TCATGTCATGAACTGGAAGGCGCTGCTGCAGCATTCGGCACGGGCCGCTG
GCAATTGCTCTGCTGCATCATTAAATTCTTGATCGGAATGCAGGATCATG
AATTCATGGCAAGCGAACGCTGACCTAGAGGTGTAGTGATGACTCAGAGC
GGCGTGCAGCTATCAGCGCAGCAACGCTGTAGCGTACGGCAAGGGCCGCA
CACCAAAAAGTATTATTTCATGATTTCGTGAAGTGATACCATAATGCTTT
GAGAAAGCGACAACAGCCCGAAGCGCTGAGCGTGATATATGCGCCCCATT
GAATCACCACTCCAGGGACGAAGGTGCGGTCTGGCTCTGTGCTTAATCCC
AACCCGAACCCTTACGCTACAAGGGCTCGGTGGCCAGTCCACAATGAAAC
TCTCCAATTTCACCCACCATGCTTGTGACCAGCAGATTTTATTGCATGGC
TAGCTCCGCAGCATCACGCACACAACTGACTGAGGCACACTGGTTGCCGC
TCCTGACACAGCCACTCAACACCTTTTACGAAAGCATTCGAGCACTTGTC
GCTGCATTGTCAGCTCTGCAGCGCTTTATACGCAACTTGCTACAACGTAT
TGGCTGCAGCTCTCCTCACACAGTAGAACCGCTTTCAGACTGCACCTCAG
CACCGCTGGTACGCTTTCCAGAGCCTGACATGAGCACTGCTGCTCGACTG
CACGTGCGCCAACAGGTGCCCCCCACGACTTCGACTCTTGACTCTAAAGC
ACTCAAAGCCGAACAGAGCAGCAGCGACTCTCAGTCGCGTCGACACAGCA
TTGCTCAGCAGCTGCTGCAGCGCGCCGCCGCGGCGCCAGCGGCAAAGGCA
GCCGCCCCGTCAGCAGCGGCGGCATCAGCTGCGCCGGCTGCCGGCAGCAG
CGGCAGCAGCACTGGCGGCGGCAGCGGCGGCGGCGGCGGCAGCAGCGGCG
ACGGCGACGACCGCCGCCGCAGCGTTGCGCAGCGGCTGCTGCAGCGCACC
GCAGCGGTGGCGATGGACGGCGGCGACCGCAGCACGCTGAGCAGCTGATG
CAGCGATGAAACTGTCAATTACGGGCGCGAGCTTGCGAGTGGCGCACGAT
GTGCAGAGGTTCCCGCTGGTGCGGGGCAACGCCCATGCAGATGCTGGCGT
TGCGCTGCACCGTTGCAAGCTGCGCCTGCGGCAGAACCGGCAAGCGGGGA
AGATTTAATGCCCTGCGCGCATGATTTCAGCATGGCAGCGACGGCAGCTC
GGCTTGTGAGCGTCTGCAACGTGCAGCGACTCCCACTGTAGTGGCGGCAA
CTGCGGCAGCGGCAGCACTAGCGGCGGGTGAAGTGAAACTGTGCTGTGTC
TTGAAAAACAT

Coding sequence (CDS) from alignment at Contig_266:10513..15273+

>mRNA_18441 ID=mRNA_18441|Name=jgi.p|Trimin1|354539|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=756bp|location=Sequence derived from alignment at Contig_266:10513..15273+ (Tribonema minus UTEX_B_3156 )
ATGTGGGGCATGTGCAGCGCCACTGCGGAGCCGCCGGCAGCTGCCGCCGC
GGCGGAGGAGGGCGCCGAGGCAGATGTTGAAGTTGAAGTTGAAGCACCGG
CAGCTGCGACGGCAGCAGAGGAGGGCGCGGAGCCAGATATTGAAGTTGAT
GTTGAAGTACTGGCAAAGCTGGACAAGCTGCGGGAGTCCATGGCGCGCTT
CCAGGCGGTCAAGCAGAAGGTGGCGCGGTCGGAGCGCGCATGGCATGCGG
TGTCCGCCGCCTCCGCCGCCGCAAGCGGGTGGCACGGTCCGAGCGCGTGT
GGCGCGCGGTGTTCGCCGCCGCTGCTGCAAGCAGCGGCGCAGCAGCAGCG
CGTCAGCGGCGGCAGCAGCGGCAGCAGCAGCGGCGGCAGTAGCAGCAGCA
GCGGCGGCGGCAGCGCCCTTGGTGTGGACCCTGAGAAGCGCAAGGCCATC
AGGGAGGCGCTGCTGCAGCGCGCGGAGAGGGCCGTTGGCAGCGCTAAGCG
CGCGGAGAGGGCCGCTGGCGGCGCTCAGCGCGCCGCCGCGGCGCCAGCGG
CAAAGGCAGCCGCCCCGTCAGCAGCGGCGGCATCAGCTGCGCCGGCTGCC
GGCAGCAGCGGCAGCAGCACTGGCGGCGGCAGCGGCGGCGGCGGCGGCAG
CAGCGGCGACGGCGACGACCGCCGCCGCAGCGTTGCGCAGCGGCTGCTGC
AGCGCACCGCAGCGGTGGCGATGGACGGCGGCGACCGCAGCACGCTGAGC
AGCTGA