mRNA_18577 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354533
Unique NamemRNA_18577
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354533 vs. uniprot
Match: A0A835YYB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB1_9STRA)

HSP 1 Score: 353 bits (906), Expect = 8.640e-121
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 
Query:    1 MGTRRCPTCHAAFHEAYCPACRASSLRGSAQGAAPGAALLPXXXXXXXXXXXXXXXXXXXXXXXXXRQRGGAVCAVEGVVALCDMQQXXXXXXXXXXXXXXXXXXXXXXXGVRAWAPLLAVDEPALCASLLRSMTARFSLSAAXXXXXXXXXXDAAERPIDSLPRTTGRDGAGHSVSSTAAADEVDAAASGPGEAVPRRPLSGGSGGGDNTSDVRQQRVFAAPRRPPAPRRVEDRPGLAVRRCYKEAHREAL 756
            MGTRRCPTCHAAFHEAYCPACRASSLRGSAQGAAPGAALLPXXXXXXXXXXXXXXXXXXXXXXXXXRQRGGAVCAVEGVVALCDMQQXXXXXXXXXXXXXXXXXXXXXXXGVRAWAPLLAVDEPALCASLLRSMTARFSLSAAXXXXXXXXXXDAAERPIDSLPRTTGRDGAGHSVSSTAAADEVDAAASGPGEAVPRRPLSGGSGGGDNTSDVRQQRVFAAPRRPPAPRRVEDRPGLAVRRCYKEAHREAL
Sbjct:    1 MGTRRCPTCHAAFHEAYCPACRASSLRGSAQGAAPGAALLPXXXXXXXXXXXXXXXXXXXXXXXXXRQRGGAVCAVEGVVALCDMQQXXXXXXXXXXXXXXXXXXXXXXXGVRAWAPLLAVDEPALCASLLRSMTARFSLSAAXXXXXXXXXXDAAERPIDSLPRTTGRDGAGHSVSSTAAADEVDAAASGPGEAVPRRPLSGGSGGGDNTSDVRQQRVFAAPRRPPAPRRVEDRPGLAVRRCYKEAHREAL 252
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BLAST of jgi.p|Trimin1|354533 vs. uniprot
Match: A0A836CDG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG3_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.320e-80
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 
Query:  331 GVRAWAPLLAVDEPALCASLLRSMTARFSLSAAXXXXXXXXXXDAAERPIDSLPRTTGRDGAGHSVSSTAAADEVDAAASGPGEAVPRRPLSGGSGGGDNTSDVRQQRVFAAPRRPPAPRRVEDRPGLAVRRCYKEAHREAL 756
            GVRAWAPLLAVDEPALCASLLRSMTARFSLSAAXXXXXXXXXXDAAERPIDSLPRTTGRDGAGHSVSSTAAADEVDAAASGPGEAVPRRPLSGGSGGGDNTSDVRQQRVFAAPRRPPAPRRVEDRPGLAVRRCYKEAHREAL
Sbjct:   22 GVRAWAPLLAVDEPALCASLLRSMTARFSLSAAXXXXXXXXXXDAAERPIDSLPRTTGRDGAGHSVSSTAAADEVDAAASGPGEAVPRRPLSGGSGGGDNTSDVRQQRVFAAPRRPPAPRRVEDRPGLAVRRCYKEAHREAL 163
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BLAST of jgi.p|Trimin1|354533 vs. uniprot
Match: A0A836CG80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG80_9STRA)

HSP 1 Score: 243 bits (621), Expect = 1.750e-75
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 1 
Query:  331 GVRAWAPLLAVDEPALCASLLRSMTARFSLSAAXXXXXXXXXXDAAERPIDSLPRTTGRDGAGHSVSSTAAADEVDAAASGPGEAVPRRPLSGGSGGGDNTSDVRQQRVFAAPRRPPAPRRVEDRPGLAVRRCYKEAHREAL 756
            GVRAWAPLLAVDEPALCASLLRSMTARFSLSAAXXXXXXXXXXDAAERPIDSLPRTTGRDGAGHSVSSTAAADEVDAAASGPGEAVPRRPLSGGSGGG N SDVRQQRVFAAPRRPPAPRRVEDRPGLAVRRCYKEAHREAL
Sbjct:  264 GVRAWAPLLAVDEPALCASLLRSMTARFSLSAAXXXXXXXXXXDAAERPIDSLPRTTGRDGAGHSVSSTAAADEVDAAASGPGEAVPRRPLSGGSGGGGNASDVRQQRVFAAPRRPPAPRRVEDRPGLAVRRCYKEAHREAL 405
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354533 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YYB1_9STRA8.640e-121100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDG3_9STRA1.320e-80100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG80_9STRA1.750e-7598.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_265contigContig_265:9089..10189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354533|estExt_Genemark1.C_Ctg_2650002
Hectar predicted targeting categoryother localisation
TranscriptId354855
TrackFilteredModels1
ProteinId354533
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354533gene_18577Tribonema minus UTEX_B_3156 geneContig_265 9089..10189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354533Trimin1|354533|estExt_Genemark1.C_Ctg_2650002Tribonema minus UTEX_B_3156 polypeptideContig_265 9089..10189 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18577_3exon_18577_3Tribonema minus UTEX_B_3156 exonContig_265 9089..9575 -
exon_18577_2exon_18577_2Tribonema minus UTEX_B_3156 exonContig_265 9853..10056 -
exon_18577_1exon_18577_1Tribonema minus UTEX_B_3156 exonContig_265 10122..10189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18577CDS_18577Tribonema minus UTEX_B_3156 CDSContig_265 10122..10189 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18577 ID=mRNA_18577|Name=jgi.p|Trimin1|354533|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_265:9089..10189- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACGCGCCGCTGCCCCACGTGCCACGCCGCGTTCCACGAGGCGTA
CTGCCCCGCGTGCCGCGCCTCTTCGCTGAGGGGCAGTGCTCAGGGTGCAG
CGCCTGGTGCAGCGCTGCTGCCGCCACCGCCGATGATGCCGCCGCCTCGG
ATGCCGCTGCCTGCGCCGCCGGCGCTGATTCTGCTGCGGCGGGCGGCGCG
GCAGCGGGGCGGTGCCGTCTGCGCAGTGGAGGGCGTCGTTGCGCTGTGCG
ACATGCAGCAGCAGCGGCAGCGCGGCACCGGCGGCGGCGGCGGCAGCGGT
GGTGACGGCAGCGGCACCGGGGGCGGCAGCGGCGTGCGAGCGTGGGCGCC
GCTGCTGGCGGTGGACGAGCCTGCGCTGTGCGCGTCGCTGCTGCGGTCGA
TGACGGCGCGCTTCAGCCTGAGCGCTGCTGCTGCCGCCGCCGCCGCCGCC
GCTGCCGCAGATGCTGCAGAGCGTCCCATAGACTCCTTGCCACGGACGAC
AGGTAGGGATGGCGCAGGCCATTCAGTCTCTAGCACAGCGGCGGCAGACG
AAGTCGACGCAGCAGCAAGCGGGCCCGGCGAGGCAGTGCCGCGGCGGCCG
CTTAGCGGCGGCAGCGGCGGCGGCGACAACACATCAGATGTGCGGCAGCA
GCGTGTGTTTGCGGCGCCGCGTCGGCCGCCGGCGCCGCGCAGAGTGGAAG
ATAGGCCCGGTTTAGCAGTTCGGCGTTGCTACAAGGAGGCGCACAGAGAA
GCGCTGTAG
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protein sequence of jgi.p|Trimin1|354533

>Trimin1|354533|estExt_Genemark1.C_Ctg_2650002 ID=Trimin1|354533|estExt_Genemark1.C_Ctg_2650002|Name=jgi.p|Trimin1|354533|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
MGTRRCPTCHAAFHEAYCPACRASSLRGSAQGAAPGAALLPPPPMMPPPR
MPLPAPPALILLRRAARQRGGAVCAVEGVVALCDMQQQRQRGTGGGGGSG
GDGSGTGGGSGVRAWAPLLAVDEPALCASLLRSMTARFSLSAAAAAAAAA
AAADAAERPIDSLPRTTGRDGAGHSVSSTAAADEVDAAASGPGEAVPRRP
LSGGSGGGDNTSDVRQQRVFAAPRRPPAPRRVEDRPGLAVRRCYKEAHRE
AL*
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mRNA from alignment at Contig_265:9089..10189-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18577 ID=mRNA_18577|Name=jgi.p|Trimin1|354533|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1101bp|location=Sequence derived from alignment at Contig_265:9089..10189- (Tribonema minus UTEX_B_3156 )
ATGGGCACGCGCCGCTGCCCCACGTGCCACGCCGCGTTCCACGAGGCGTA
CTGCCCCGCGTGCCGCGCGTGGAGCTCGCACGACAGCGCGCGCGGCACTT
CCCGCCGCCCCTCTCGTCTGCCCCTGCGGCCAGCTCTTCGCTGAGGGGCA
GTGCTCAGGGTGCAGCGCCTGGTGCAGCGCTGCTGCCGCCACCGCCGATG
ATGCCGCCGCCTCGGATGCCGCTGCCTGCGCCGCCGGCGCTGATTCTGCT
GCGGCGGGCGGCGCGGCAGCGGGGCGGTGCCGTCTGCGCAGTGGAGGGCG
TCGTTGCGCTGTGCGACATGCAGCAGCAGCGGCAGCGGTAGCGGCGGCAG
CAGTGGCAGCGGCGCTGCAGCCTCTGCTGCTTCAGGCGGCAGCAGTAATG
TCAACGTTGCATGCGACCACTTAGACACCTGCGCTGGCGCCGCTGATGCT
GCAGCCGCGCGCACCCATTTGTCGCAACGCCATGATGCCGGCAGCAGTGG
CAGTAGCTGCATTAGGAGCACATTACATGATGTCTCTGCCACAGCCGGTG
TCGTGGGGGGCGGGTGCAATGACAACACTTCAGGAGCTGCTGCTGTCGTG
GCGCGAGACGATAGCGGCACCGGCGGCGGCGGCGGCAGCGGTGGTGACGG
CAGCGGCACCGGGGGCGGCAGCGGCGTGCGAGCGTGGGCGCCGCTGCTGG
CGGTGGACGAGCCTGCGCTGTGCGCGTCGCTGCTGCGGTCGATGACGGCG
CGCTTCAGCCTGAGCGCTGCTGCTGCCGCCGCCGCCGCCGCCGCTGCCGC
AGATGCTGCAGAGCGTCCCATAGACTCCTTGCCACGGACGACAGGTAGGG
ATGGCGCAGGCCATTCAGTCTCTAGCACAGCGGCGGCAGACGAAGTCGAC
GCAGCAGCAAGCGGGCCCGGCGAGGCAGTGCCGCGGCGGCCGCTTAGCGG
CGGCAGCGGCGGCGGCGACAACACATCAGATGTGCGGCAGCAGCGTGTGT
TTGCGGCGCCGCGTCGGCCGCCGGCGCCGCGCAGAGTGGAAGATAGGCCC
GGTTTAGCAGTTCGGCGTTGCTACAAGGAGGCGCACAGAGAAGCGCTGTA
G
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Coding sequence (CDS) from alignment at Contig_265:9089..10189-

>mRNA_18577 ID=mRNA_18577|Name=jgi.p|Trimin1|354533|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_265:9089..10189- (Tribonema minus UTEX_B_3156 )
ATGGGCACGCGCCGCTGCCCCACGTGCCACGCCGCGTTCCACGAGGCGTA
CTGCCCCGCGTGCCGCGCCTCTTCGCTGAGGGGCAGTGCTCAGGGTGCAG
CGCCTGGTGCAGCGCTGCTGCCGCCACCGCCGATGATGCCGCCGCCTCGG
ATGCCGCTGCCTGCGCCGCCGGCGCTGATTCTGCTGCGGCGGGCGGCGCG
GCAGCGGGGCGGTGCCGTCTGCGCAGTGGAGGGCGTCGTTGCGCTGTGCG
ACATGCAGCAGCAGCGGCAGCGCGGCACCGGCGGCGGCGGCGGCAGCGGT
GGTGACGGCAGCGGCACCGGGGGCGGCAGCGGCGTGCGAGCGTGGGCGCC
GCTGCTGGCGGTGGACGAGCCTGCGCTGTGCGCGTCGCTGCTGCGGTCGA
TGACGGCGCGCTTCAGCCTGAGCGCTGCTGCTGCCGCCGCCGCCGCCGCC
GCTGCCGCAGATGCTGCAGAGCGTCCCATAGACTCCTTGCCACGGACGAC
AGGTAGGGATGGCGCAGGCCATTCAGTCTCTAGCACAGCGGCGGCAGACG
AAGTCGACGCAGCAGCAAGCGGGCCCGGCGAGGCAGTGCCGCGGCGGCCG
CTTAGCGGCGGCAGCGGCGGCGGCGACAACACATCAGATGTGCGGCAGCA
GCGTGTGTTTGCGGCGCCGCGTCGGCCGCCGGCGCCGCGCAGAGTGGAAG
ATAGGCCCGGTTTAGCAGTTCGGCGTTGCTACAAGGAGGCGCACAGAGAA
GCGCTGTAG
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