mRNA_1957 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|163671
Unique Name	mRNA_1957
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|163671 vs. uniprot
Match: A0A835YYS3_9STRA (Zinc finger protein 271-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYS3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.180e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1

Query:    1 MCDFEGCDYASAQLSNLVAHERTHTGELPFK 93
            MCDFEGCDYASAQLSNLVAHERTHTGELPFK
Sbjct:    1 MCDFEGCDYASAQLSNLVAHERTHTGELPFK 31

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|163671 vs. uniprot

BLAST of jgi.p|Trimin1|163671 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YYS3_9STRA	3.180e-10	100.00	Zinc finger protein 271-like protein (Fragment) n=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_26	contig	Contig_26:612909..613871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|163671\|e_gw1.26.16.1
Hectar predicted targeting category	other localisation
TranscriptId	163993
Track	FilteredModels1
ProteinId	163671

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163671	gene_1957	Tribonema minus UTEX_B_3156	gene	Contig_26 612909..613871 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1957_1	exon_1957_1	Tribonema minus UTEX_B_3156	exon	Contig_26 612909..613871 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1957	CDS_1957	Tribonema minus UTEX_B_3156	CDS	Contig_26 612909..613871 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163671	Trimin1\|163671\|e_gw1.26.16.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_26 612909..613871 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_26:612909..613871+
coding sequence from alignment at Contig_26:612909..613871+

spliced messenger RNA

>mRNA_1957 ID=mRNA_1957|Name=jgi.p|Trimin1|163671|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=963bp|location=Sequence derived from alignment at Contig_26:612909..613871+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGACTTTGAGGGTTGCGACTATGCCAGCGCACAGCTCAGCAACCT
CGTTGCACATGAGCGCACCCACACTGGTGAACTTCCTTTCAAGTGTGACT
TTGATGGGTGCGACCATGCGTGCGCAACATCCGGCAGCCTTGTCACCCAC
AAGCGCACGCACACCAGCGACAAGCCCTACGAGTGTGACTTTGAGGGCTG
TGAGTATGCATGTTCGACAACTGGCAGCCTCGTCACGCACAAGCGTAGGC
ACACCGGCGAAAAGCCATACAAGTGTGACTTTGAGGGCTGTAACTACGCC
TCCACAAACTCAAGCAGCCTCACCGCACACAAGCGCACCCATACTGGTGA
GAAACCATACAAGTGTGACTTTGAGAGCTGTGATTACACATGCGCAACAT
CTGGCACCCTTGTCACGCACAAGCGTTCGCACACTGGCGAGAAGCCTTTC
AAGTGTGATGTCCAGGGCTGCGACTACGCGAGTGCACAGCTCAGCCATCT
TGTCACACACAAGCGCTCCCACACCGGTGAGAAGCCATTCGAGTGTGATT
TTGAGGGCTGCAGCTATGCGTGCGCATCGTCCAGCAGCCTCGTCGTACAT
AAGCGCACCCACACCGGGGAAAAACCATACGAGTGTGAGTTTGAGGGCTG
CGACTACACATGCTCGGAGGCTGGCAAACTCACTACCCACAAGCGCACCC
ACACCGGGGAGAAACCATACAAGTGTGATTTTGAAGGATGCAGCTTTGCA
TGCACATCGTCCAGCGGCCTCCTCGTCCACAAGCGCACCCACACCGGCGA
GAAGCCATACCTATGTGAGTTTCAAGGCTGCGACTACACGTGCAGACAGG
CAGGAGACCTCGTCGCGCACAAGCGCACTCACACGGGGGACAAGCCCTTC
AAATGCAACTTTGAGGGATGTGACTACGCGAGCACACAGACTAGCAACCT
CACATCGCACAAG

protein sequence of jgi.p|Trimin1|163671

>Trimin1|163671|e_gw1.26.16.1 ID=Trimin1|163671|e_gw1.26.16.1|Name=jgi.p|Trimin1|163671|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=321bp
MCDFEGCDYASAQLSNLVAHERTHTGELPFKCDFDGCDHACATSGSLVTH
KRTHTSDKPYECDFEGCEYACSTTGSLVTHKRRHTGEKPYKCDFEGCNYA
STNSSSLTAHKRTHTGEKPYKCDFESCDYTCATSGTLVTHKRSHTGEKPF
KCDVQGCDYASAQLSHLVTHKRSHTGEKPFECDFEGCSYACASSSSLVVH
KRTHTGEKPYECEFEGCDYTCSEAGKLTTHKRTHTGEKPYKCDFEGCSFA
CTSSSGLLVHKRTHTGEKPYLCEFQGCDYTCRQAGDLVAHKRTHTGDKPF
KCNFEGCDYASTQTSNLTSHK

mRNA from alignment at Contig_26:612909..613871+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1957 ID=mRNA_1957|Name=jgi.p|Trimin1|163671|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=963bp|location=Sequence derived from alignment at Contig_26:612909..613871+ (Tribonema minus UTEX_B_3156 )
ATGTGCGACTTTGAGGGTTGCGACTATGCCAGCGCACAGCTCAGCAACCT
CGTTGCACATGAGCGCACCCACACTGGTGAACTTCCTTTCAAGTGTGACT
TTGATGGGTGCGACCATGCGTGCGCAACATCCGGCAGCCTTGTCACCCAC
AAGCGCACGCACACCAGCGACAAGCCCTACGAGTGTGACTTTGAGGGCTG
TGAGTATGCATGTTCGACAACTGGCAGCCTCGTCACGCACAAGCGTAGGC
ACACCGGCGAAAAGCCATACAAGTGTGACTTTGAGGGCTGTAACTACGCC
TCCACAAACTCAAGCAGCCTCACCGCACACAAGCGCACCCATACTGGTGA
GAAACCATACAAGTGTGACTTTGAGAGCTGTGATTACACATGCGCAACAT
CTGGCACCCTTGTCACGCACAAGCGTTCGCACACTGGCGAGAAGCCTTTC
AAGTGTGATGTCCAGGGCTGCGACTACGCGAGTGCACAGCTCAGCCATCT
TGTCACACACAAGCGCTCCCACACCGGTGAGAAGCCATTCGAGTGTGATT
TTGAGGGCTGCAGCTATGCGTGCGCATCGTCCAGCAGCCTCGTCGTACAT
AAGCGCACCCACACCGGGGAAAAACCATACGAGTGTGAGTTTGAGGGCTG
CGACTACACATGCTCGGAGGCTGGCAAACTCACTACCCACAAGCGCACCC
ACACCGGGGAGAAACCATACAAGTGTGATTTTGAAGGATGCAGCTTTGCA
TGCACATCGTCCAGCGGCCTCCTCGTCCACAAGCGCACCCACACCGGCGA
GAAGCCATACCTATGTGAGTTTCAAGGCTGCGACTACACGTGCAGACAGG
CAGGAGACCTCGTCGCGCACAAGCGCACTCACACGGGGGACAAGCCCTTC
AAATGCAACTTTGAGGGATGTGACTACGCGAGCACACAGACTAGCAACCT
CACATCGCACAAG

Coding sequence (CDS) from alignment at Contig_26:612909..613871+

>mRNA_1957 ID=mRNA_1957|Name=jgi.p|Trimin1|163671|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=963bp|location=Sequence derived from alignment at Contig_26:612909..613871+ (Tribonema minus UTEX_B_3156 )
ATGTGCGACTTTGAGGGTTGCGACTATGCCAGCGCACAGCTCAGCAACCT
CGTTGCACATGAGCGCACCCACACTGGTGAACTTCCTTTCAAGTGTGACT
TTGATGGGTGCGACCATGCGTGCGCAACATCCGGCAGCCTTGTCACCCAC
AAGCGCACGCACACCAGCGACAAGCCCTACGAGTGTGACTTTGAGGGCTG
TGAGTATGCATGTTCGACAACTGGCAGCCTCGTCACGCACAAGCGTAGGC
ACACCGGCGAAAAGCCATACAAGTGTGACTTTGAGGGCTGTAACTACGCC
TCCACAAACTCAAGCAGCCTCACCGCACACAAGCGCACCCATACTGGTGA
GAAACCATACAAGTGTGACTTTGAGAGCTGTGATTACACATGCGCAACAT
CTGGCACCCTTGTCACGCACAAGCGTTCGCACACTGGCGAGAAGCCTTTC
AAGTGTGATGTCCAGGGCTGCGACTACGCGAGTGCACAGCTCAGCCATCT
TGTCACACACAAGCGCTCCCACACCGGTGAGAAGCCATTCGAGTGTGATT
TTGAGGGCTGCAGCTATGCGTGCGCATCGTCCAGCAGCCTCGTCGTACAT
AAGCGCACCCACACCGGGGAAAAACCATACGAGTGTGAGTTTGAGGGCTG
CGACTACACATGCTCGGAGGCTGGCAAACTCACTACCCACAAGCGCACCC
ACACCGGGGAGAAACCATACAAGTGTGATTTTGAAGGATGCAGCTTTGCA
TGCACATCGTCCAGCGGCCTCCTCGTCCACAAGCGCACCCACACCGGCGA
GAAGCCATACCTATGTGAGTTTCAAGGCTGCGACTACACGTGCAGACAGG
CAGGAGACCTCGTCGCGCACAAGCGCACTCACACGGGGGACAAGCCCTTC
AAATGCAACTTTGAGGGATGTGACTACGCGAGCACACAGACTAGCAACCT
CACATCGCACAAG