mRNA_1843 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163609
Unique NamemRNA_1843
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163609 vs. uniprot
Match: A0A835ZBW1_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW1_9STRA)

HSP 1 Score: 363 bits (931), Expect = 8.100e-127
Identity = 182/184 (98.91%), Postives = 183/184 (99.46%), Query Frame = 1 
Query:    1 MRVLAFDIGCLNFAACLVEVSPSTNPQVIACCNVVLGASKECVASLIAAMHTQICNNPFMTAAGCDAVLIEQQCGHASPKNFALSAALYMFYQQRLDAGAIGSLQFVNPRVKFSRLAKMNLPALANYKDQLVQCRGKELKQLSVNCAIELARAWNCSVFQDAMMRAKKQDDLSDAMLYAVTHLI 552
            MRVLAFDIGCLNFAACLVEVSPSTNPQVIACCNVVLGASKECVASLIAAMHTQI NNPFMTAAGCDAVLIEQQCGHASPKNFALSAALYMFYQQRLDAGAIGSLQFVNPRVKFSRLAKMNLPALANYKDQLVQCRGKELKQLSVNCAIELARAWNCSVFQDAMMRAKKQDDLSDAMLYAVTH+I
Sbjct:    1 MRVLAFDIGCLNFAACLVEVSPSTNPQVIACCNVVLGASKECVASLIAAMHTQIRNNPFMTAAGCDAVLIEQQCGHASPKNFALSAALYMFYQQRLDAGAIGSLQFVNPRVKFSRLAKMNLPALANYKDQLVQCRGKELKQLSVNCAIELARAWNCSVFQDAMMRAKKQDDLSDAMLYAVTHVI 184
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BLAST of jgi.p|Trimin1|163609 vs. uniprot
Match: A0A836CLZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLZ6_9STRA)

HSP 1 Score: 270 bits (689), Expect = 6.660e-81
Identity = 135/164 (82.32%), Postives = 148/164 (90.24%), Query Frame = 1 
Query:   61 SPSTNPQ--VIACCNVVLGASKECVASLIAAMHTQICNNPFMTAAGCDAVLIEQQCGHASPKNFALSAALYMFYQQRLDAGAIGSLQFVNPRVKFSRLAKMNLPALANYKDQLVQCRGKELKQLSVNCAIELARAWNCSVFQDAMMRAKKQDDLSDAMLYAVTH 546
            S STN    V+ACCNV LG SK C+ASLIAAMH Q+C++PFMTA GC AVLIEQQCGH SPKNFALSAALYMFYQQRLDAGAI SLQFVNPRVKFSRLA+M+LPALA +KD+LVQCRGKELK+LSV CAIELARAWNC+VFQ+AM+R KKQDDLSDAMLYAVTH
Sbjct:  998 STSTNSMSPVLACCNVKLGDSKACIASLIAAMHAQMCDHPFMTADGCGAVLIEQQCGHVSPKNFALSAALYMFYQQRLDAGAISSLQFVNPRVKFSRLAQMDLPALAQFKDELVQCRGKELKKLSVKCAIELARAWNCTVFQEAMIRVKKQDDLSDAMLYAVTH 1161
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163609 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZBW1_9STRA8.100e-12798.91Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CLZ6_9STRA6.660e-8182.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:282648..283202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163609|e_gw1.26.205.1
Hectar predicted targeting categoryother localisation
TranscriptId163931
TrackFilteredModels1
ProteinId163609
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163609gene_1843Tribonema minus UTEX_B_3156 geneContig_26 282648..283202 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1843_1exon_1843_1Tribonema minus UTEX_B_3156 exonContig_26 282648..283202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1843CDS_1843Tribonema minus UTEX_B_3156 CDSContig_26 282648..283202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163609Trimin1|163609|e_gw1.26.205.1Tribonema minus UTEX_B_3156 polypeptideContig_26 282648..283202 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1843 ID=mRNA_1843|Name=jgi.p|Trimin1|163609|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=555bp|location=Sequence derived from alignment at Contig_26:282648..283202+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGTTCTTGCATTCGATATCGGGTGTTTAAATTTTGCTGCTTGCCT
TGTAGAGGTGAGCCCGTCCACAAATCCACAAGTGATTGCCTGTTGCAATG
TGGTGCTGGGTGCGTCTAAGGAGTGCGTAGCATCTCTAATTGCTGCAATG
CACACACAAATCTGCAACAACCCTTTCATGACTGCTGCTGGGTGTGATGC
TGTGCTAATCGAACAGCAGTGTGGACACGCATCACCGAAAAACTTTGCTC
TGTCAGCTGCACTGTACATGTTTTACCAGCAGAGGCTGGATGCAGGCGCA
ATCGGGTCGCTGCAGTTTGTCAATCCACGAGTTAAGTTTTCAAGGCTGGC
AAAGATGAATTTGCCTGCCCTAGCCAATTACAAGGATCAGCTCGTGCAGT
GCAGAGGCAAGGAGCTGAAGCAACTGAGTGTTAACTGCGCCATCGAGCTA
GCGAGAGCGTGGAACTGCAGCGTGTTTCAAGATGCCATGATGCGGGCCAA
AAAGCAGGATGACCTCAGCGATGCCATGTTGTACGCGGTCACACACTTGA
TCTGA
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protein sequence of jgi.p|Trimin1|163609

>Trimin1|163609|e_gw1.26.205.1 ID=Trimin1|163609|e_gw1.26.205.1|Name=jgi.p|Trimin1|163609|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=185bp
MRVLAFDIGCLNFAACLVEVSPSTNPQVIACCNVVLGASKECVASLIAAM
HTQICNNPFMTAAGCDAVLIEQQCGHASPKNFALSAALYMFYQQRLDAGA
IGSLQFVNPRVKFSRLAKMNLPALANYKDQLVQCRGKELKQLSVNCAIEL
ARAWNCSVFQDAMMRAKKQDDLSDAMLYAVTHLI*
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mRNA from alignment at Contig_26:282648..283202+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1843 ID=mRNA_1843|Name=jgi.p|Trimin1|163609|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=555bp|location=Sequence derived from alignment at Contig_26:282648..283202+ (Tribonema minus UTEX_B_3156 )
ATGCGGGTTCTTGCATTCGATATCGGGTGTTTAAATTTTGCTGCTTGCCT
TGTAGAGGTGAGCCCGTCCACAAATCCACAAGTGATTGCCTGTTGCAATG
TGGTGCTGGGTGCGTCTAAGGAGTGCGTAGCATCTCTAATTGCTGCAATG
CACACACAAATCTGCAACAACCCTTTCATGACTGCTGCTGGGTGTGATGC
TGTGCTAATCGAACAGCAGTGTGGACACGCATCACCGAAAAACTTTGCTC
TGTCAGCTGCACTGTACATGTTTTACCAGCAGAGGCTGGATGCAGGCGCA
ATCGGGTCGCTGCAGTTTGTCAATCCACGAGTTAAGTTTTCAAGGCTGGC
AAAGATGAATTTGCCTGCCCTAGCCAATTACAAGGATCAGCTCGTGCAGT
GCAGAGGCAAGGAGCTGAAGCAACTGAGTGTTAACTGCGCCATCGAGCTA
GCGAGAGCGTGGAACTGCAGCGTGTTTCAAGATGCCATGATGCGGGCCAA
AAAGCAGGATGACCTCAGCGATGCCATGTTGTACGCGGTCACACACTTGA
TCTGA
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Coding sequence (CDS) from alignment at Contig_26:282648..283202+

>mRNA_1843 ID=mRNA_1843|Name=jgi.p|Trimin1|163609|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=555bp|location=Sequence derived from alignment at Contig_26:282648..283202+ (Tribonema minus UTEX_B_3156 )
ATGCGGGTTCTTGCATTCGATATCGGGTGTTTAAATTTTGCTGCTTGCCT
TGTAGAGGTGAGCCCGTCCACAAATCCACAAGTGATTGCCTGTTGCAATG
TGGTGCTGGGTGCGTCTAAGGAGTGCGTAGCATCTCTAATTGCTGCAATG
CACACACAAATCTGCAACAACCCTTTCATGACTGCTGCTGGGTGTGATGC
TGTGCTAATCGAACAGCAGTGTGGACACGCATCACCGAAAAACTTTGCTC
TGTCAGCTGCACTGTACATGTTTTACCAGCAGAGGCTGGATGCAGGCGCA
ATCGGGTCGCTGCAGTTTGTCAATCCACGAGTTAAGTTTTCAAGGCTGGC
AAAGATGAATTTGCCTGCCCTAGCCAATTACAAGGATCAGCTCGTGCAGT
GCAGAGGCAAGGAGCTGAAGCAACTGAGTGTTAACTGCGCCATCGAGCTA
GCGAGAGCGTGGAACTGCAGCGTGTTTCAAGATGCCATGATGCGGGCCAA
AAAGCAGGATGACCTCAGCGATGCCATGTTGTACGCGGTCACACACTTGA
TCTGA
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