mRNA_1944 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163605
Unique NamemRNA_1944
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|163605 vs. uniprot
Match: A0A836CG78_9STRA (VWFA domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG78_9STRA)

HSP 1 Score: 496 bits (1276), Expect = 3.730e-177
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 756
            MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD
Sbjct:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 252
[Close]
BLAST of jgi.p|Trimin1|163605 vs. uniprot
Match: A0A835YYE7_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE7_9STRA)

HSP 1 Score: 423 bits (1087), Expect = 2.380e-148
Identity = 206/252 (81.75%), Postives = 231/252 (91.67%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 756
            MKLPP APPAMHFINAKGS+VP+EFAIAAR NPD+IPQMAET KE + L +EALARQYV+IVDMSGSMA RDG+GTRWDSAR AVEKMVDTIF YDVDHTVPLYLFDS+VTF+GELT  SQVKAVFKEFGPRG+TGLG ALREAL TYAGTKRPNY+LVPGTTFIVLLDGGADDE +V RVLQEFADP++GY+ NHTQ+A+SF+Q+GDDA ASAFL++LDD ITPDICDF +DDIL+Q GGLD LL++AIFD
Sbjct:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 252
[Close]
BLAST of jgi.p|Trimin1|163605 vs. uniprot
Match: A0A836CHH8_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH8_9STRA)

HSP 1 Score: 369 bits (948), Expect = 3.500e-127
Identity = 183/252 (72.62%), Postives = 209/252 (82.94%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 756
            MKLP    P   F+NA+GS+VPQE+AIAARA+PD I  MAET  EL+ LQKEALARQYVIIVD SGSMAA DG+GTRWDSAR AV KM+DTIF YDVDHTVP+Y+FD+E  FIGE+TKASQVK +F EF PRGTT L   L EA+ TYAGTKRPNY L+PGTTFIVLLDGGADDE  VMR L+ FADPRNGY+ NHTQIALSF+Q+GDDA A+ FL++LDD I PDICD K+DD+L   GGLD+LL+DAIFD
Sbjct:    1 MKLPSAPAPRTQFVNAQGSHVPQEYAIAARADPDCIKDMAETSNELKDLQKEALARQYVIIVDRSGSMAASDGRGTRWDSARDAVAKMIDTIFKYDVDHTVPVYVFDNESVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEAIETYAGTKRPNYSLIPGTTFIVLLDGGADDEEAVMRSLRHFADPRNGYVANHTQIALSFLQIGDDAGATRFLKRLDDEIEPDICDTKKDDVLKTSGGLDQLLYDAIFD 252
[Close]
BLAST of jgi.p|Trimin1|163605 vs. uniprot
Match: A0A835Z7E0_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E0_9STRA)

HSP 1 Score: 368 bits (944), Expect = 1.420e-126
Identity = 180/252 (71.43%), Postives = 210/252 (83.33%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 756
            MKLPP + P+  F+NAKGSNV QE+AIAARANPD IP MAETP+EL+ LQKEALARQYVIIVD SGSM A DG+GT WDSAR AV +M+DT+  YD+DHTVP+Y+FD+E  FIGE+TKASQVK +F EF PRGTT L   L EAL TYAGTKRPNY+LVPGTTFIVLLDGGADDE  VM+ +  FADPRNGY+ NHTQIA+S  Q+GDD SA+ FL++LDD I PDICD ++DDIL++ GGLDRLL+ AIFD
Sbjct:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 252
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BLAST of jgi.p|Trimin1|163605 vs. uniprot
Match: A0A835ZEJ5_9STRA (VWFA domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ5_9STRA)

HSP 1 Score: 362 bits (929), Expect = 2.830e-124
Identity = 180/253 (71.15%), Postives = 211/253 (83.40%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKG-TRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 756
            MKLPP APP+  F+NA+GS+VP+E+A+ AR+NPD+I  MAETPKE   LQKEAL RQYV+IVD SGSM+  DG G TRWDSA +A+EKMVDTIF YDVDH VPLYLFDSEV F+GELT  +QV+ +FKEF PRG+TGL  AL EALSTYAGTKRPNY++VPGTTFIVLLDGGADDE  V+R ++ FADP N +I NHTQIA+SFVQ+GDD +A  FL++LDD+  PDICD K+DDIL Q GGLDRLL DAIFD
Sbjct:    1 MKLPPTAPPSTMFVNAQGSDVPKEYALPARSNPDLIVTMAETPKEKMDLQKEALVRQYVLIVDRSGSMSNPDGSGRTRWDSAGAAIEKMVDTIFQYDVDHQVPLYLFDSEVIFVGELTSPAQVRQIFKEFKPRGSTGLDKALHEALSTYAGTKRPNYEVVPGTTFIVLLDGGADDEEAVLRTIKYFADPANRFIANHTQIAISFVQIGDDPNAERFLKRLDDTSDPDICDTKKDDILYQAGGLDRLLFDAIFD 253
[Close]
BLAST of jgi.p|Trimin1|163605 vs. uniprot
Match: A0A835YR58_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR58_9STRA)

HSP 1 Score: 349 bits (895), Expect = 4.220e-119
Identity = 179/253 (70.75%), Postives = 204/253 (80.63%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKG-TRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 756
            MKLPP A  +  F+NA+GS+VP+EFA+ AR+NPD+I  MAETPKE   LQ+EAL RQYV+IVD SGSMAA D  G TRWDSA  AVE MVDTIF YD DH VPLYLFDSEVT +GELT  SQVK VF+E+ PRG+TGL  AL EAL+TYAGTKRPNY++VPGTTFIVLLDG ADDE  VMR ++ FADP N +I NHTQIALSFVQ+GDD +A  FL  LD++  PDICD K+DDIL Q GGLDRLLHDAIFD
Sbjct:    1 MKLPPAAALSTMFVNAQGSDVPKEFALPARSNPDLIATMAETPKEKTTLQREALIRQYVLIVDRSGSMAAPDRNGRTRWDSAGVAVENMVDTIFKYDNDHQVPLYLFDSEVTSVGELTSPSQVKQVFREYRPRGSTGLDKALHEALNTYAGTKRPNYEVVPGTTFIVLLDGSADDEEPVMRTIRYFADPANKFIANHTQIALSFVQIGDDPNAERFLNCLDETAEPDICDTKKDDILYQAGGLDRLLHDAIFD 253
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BLAST of jgi.p|Trimin1|163605 vs. uniprot
Match: A0A835ZDC5_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDC5_9STRA)

HSP 1 Score: 337 bits (865), Expect = 2.430e-114
Identity = 168/252 (66.67%), Postives = 203/252 (80.56%), Query Frame = 1 
Query:    4 KLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKG-TRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 756
            +LPP   PA  F+NAKGS+VP+++A+AARANPD+I  MA+T  EL  L+KEALARQYV+IVD S SM   DG G TRWDSAR+AVE MV TIF +D+DHTVPLY FD  V F+GELT ASQV+  F+E+ P G+T L AAL EAL TYAGTKRPNY+LVPGTTFIVLLDGGADDE+ V+R ++ FADP NGYI NHTQIA+S VQ+GDD  A  FL+ LD+++ PDICD K+DDIL Q GG+D++L+DAIFD
Sbjct:   15 QLPPAPAPATEFVNAKGSDVPKQYALAARANPDLIHTMADTSTELSDLKKEALARQYVLIVDKSTSMGWGDGAGKTRWDSARAAVETMVLTIFEHDIDHTVPLYFFDRNVDFVGELTSASQVQQAFREYSPGGSTNLDAALLEALGTYAGTKRPNYELVPGTTFIVLLDGGADDESAVLRTIRHFADPANGYIANHTQIAISLVQIGDDDVAERFLKTLDNTVDPDICDTKKDDILYQAGGIDKMLYDAIFD 266
[Close]
BLAST of jgi.p|Trimin1|163605 vs. uniprot
Match: A0A835YW67_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW67_9STRA)

HSP 1 Score: 332 bits (851), Expect = 1.810e-112
Identity = 170/245 (69.39%), Postives = 202/245 (82.45%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKG-TRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQI--ALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGL 726
            MKLPP APP+  F+NA+GS+VP+E+A+ ARANPD+I  MAETPKE   LQ+EAL RQYV+IV+ SGSM   DG G TRWDSA +AVEKMVDTIF YDVDHTVPLY+FDSEV F+GELT  +QVK VF+EFGPRG+TGL   L EALSTYAGTKRPNY++VPGTTFIVLLDGGADDE + +R ++ FADP N +I NHTQI  A+SFVQ+GDD +A  FL++LDD++ PDI D K+DDIL Q GGL
Sbjct:    1 MKLPPTAPPSTLFVNAQGSDVPKEYALPARANPDLIVSMAETPKEKMDLQREALDRQYVLIVERSGSMFNPDGSGKTRWDSAGAAVEKMVDTIFDYDVDHTVPLYVFDSEVIFVGELTSPAQVKQVFREFGPRGSTGLDKGLHEALSTYAGTKRPNYEVVPGTTFIVLLDGGADDE-EAVRTIRYFADPANRFIANHTQIQIAISFVQIGDDTNAERFLKRLDDTVEPDIFDTKKDDILYQAGGL 244
[Close]
BLAST of jgi.p|Trimin1|163605 vs. uniprot
Match: Q8QNB1_ESV1K (EsV-1-176 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB1_ESV1K)

HSP 1 Score: 308 bits (789), Expect = 5.740e-103
Identity = 153/254 (60.24%), Postives = 192/254 (75.59%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSI--TPDICDFKRDDILTQLGGLDRLLHDAIFD 756
            MKLP  AP +  F NA+GS+VP+EFA+ AR NP+VI QMAETP E  AL+KEALARQYV+++D SGSM   DG  TRW+SAR AVEK+V+  F YD DH VP+YLFD +V F+GE T +SQV  VFK + PRGTT L   L  A+  YAG KRPNY++ PGTTFIV+LDG ADD+  V RVL++F+DP +GY+ NHTQ+A+SF+Q+ DD  A+AFL +LD     +PDI D K+DDIL+  GG+D+L HDAIFD
Sbjct:    1 MKLPAAAPASTEFRNAEGSSVPKEFALEARKNPEVISQMAETPSEKSALEKEALARQYVLLIDRSGSMGWADGSTTRWESARKAVEKLVEAAFIYDTDHRVPVYLFDDKVEFVGECTSSSQVVDVFKNYQPRGTTDLAQCLEVAMEEYAGRKRPNYEVCPGTTFIVVLDGCADDKDAVKRVLRKFSDPVSGYVANHTQLAISFLQIADDPGATAFLNELDRGFVGSPDIVDTKKDDILSLPGGIDKLFHDAIFD 254
[Close]
BLAST of jgi.p|Trimin1|163605 vs. uniprot
Match: D8LPJ6_ECTSI (EsV-1-176 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ6_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 2.550e-99
Identity = 146/254 (57.48%), Postives = 192/254 (75.59%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSI--TPDICDFKRDDILTQLGGLDRLLHDAIFD 756
            MKLP  AP +  F NA+GS VP+EFA+ AR NP+VI QMAE+P E + L+KEALARQYV+I+D SGSM+  DGK TRW+SAR AVEK+V+++F YD+D ++PLYLFD +V F+GE T + Q+ +VF ++ PRG T L   L  A+ TY G  R N++ VPGTTF+V+LDG ADD   V  V++++ADP +G++ENHT  A+SFVQ+ DD  A+AFL+ LDD I  TPDICDFK D+ L++  G+DRLL DAIFD
Sbjct:    1 MKLPAAAPASTEFRNAEGSTVPKEFALEARKNPEVISQMAESPSEKRDLEKEALARQYVLIIDRSGSMSWPDGKTTRWESARKAVEKIVESVFKYDIDGSIPLYLFDDQVEFVGECTNSGQIVSVFNDYQPRGRTDLAKCLDVAMKTYLGKNRINFETVPGTTFLVILDGDADDRQAVKDVIRKYADPASGFVENHTNAAISFVQIADDPGATAFLKDLDDGIIGTPDICDFKVDNFLSEKDGVDRLLFDAIFD 254
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163605 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG78_9STRA3.730e-177100.00VWFA domain-containing protein n=2 Tax=Tribonema m... [more]
A0A835YYE7_9STRA2.380e-14881.75VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CHH8_9STRA3.500e-12772.62VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z7E0_9STRA1.420e-12671.43VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZEJ5_9STRA2.830e-12471.15VWFA domain-containing protein n=2 Tax=Tribonema m... [more]
A0A835YR58_9STRA4.220e-11970.75VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZDC5_9STRA2.430e-11466.67VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YW67_9STRA1.810e-11269.39VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
Q8QNB1_ESV1K5.740e-10360.24EsV-1-176 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPJ6_ECTSI2.550e-9957.48EsV-1-176 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:589106..589864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163605|e_gw1.26.209.1
DescriptionvWA found in TerF C terminus
COG categoryS
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG2304@1|root,COG2304@2|Bacteria,1G11R@1117|Cyanobacteria,1JH8U@1189|Stigonemataceae
Evalue3.04e-22
Seed ortholog1173023.KE650771_gene4854
Hectar predicted targeting categoryother localisation
TranscriptId163927
TrackFilteredModels1
ProteinId163605
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163605gene_1944Tribonema minus UTEX_B_3156 geneContig_26 589106..589864 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1944_1exon_1944_1Tribonema minus UTEX_B_3156 exonContig_26 589106..589864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1944CDS_1944Tribonema minus UTEX_B_3156 CDSContig_26 589106..589864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163605Trimin1|163605|e_gw1.26.209.1Tribonema minus UTEX_B_3156 polypeptideContig_26 589106..589864 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1944 ID=mRNA_1944|Name=jgi.p|Trimin1|163605|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_26:589106..589864+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGCCTCCCGTCGCACCACCCGCAATGCACTTCATCAATGCTAA
AGGCAGCAACGTGCCGCAGGAGTTTGCCATTGCAGCACGTGCCAACCCCG
ATGTCATTCCGCAGATGGCGGAAACACCCAAGGAACTGCAGGCCTTACAG
AAAGAGGCGCTGGCAAGGCAATATGTCATCATTGTCGATATGTCCGGCTC
CATGGCGGCAAGGGATGGGAAAGGCACACGCTGGGACTCTGCCCGTTCTG
CTGTTGAAAAGATGGTGGACACAATATTTGCATACGATGTGGATCATACT
GTCCCTCTCTACCTGTTTGACAGCGAGGTCACATTTATCGGTGAGCTCAC
CAAGGCATCGCAGGTCAAGGCTGTTTTCAAGGAGTTCGGTCCAAGGGGGA
CGACAGGATTGGGTGCTGCTCTGCGAGAGGCGCTGAGCACGTATGCTGGC
ACGAAACGGCCCAACTACCAGCTCGTGCCGGGCACAACCTTCATTGTACT
GCTTGACGGCGGCGCAGATGATGAAGCTGATGTAATGCGCGTGCTGCAGG
AGTTTGCAGACCCCAGGAATGGCTACATTGAAAACCACACCCAAATAGCT
CTTTCCTTCGTCCAGGTCGGCGATGACGCGTCAGCATCCGCTTTCCTACA
GAAGCTCGATGACAGCATCACGCCAGACATTTGCGACTTCAAACGCGACG
ACATTCTAACACAATTGGGTGGGCTAGATAGGCTGCTGCATGACGCAATA
TTCGATTAG
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protein sequence of jgi.p|Trimin1|163605

>Trimin1|163605|e_gw1.26.209.1 ID=Trimin1|163605|e_gw1.26.209.1|Name=jgi.p|Trimin1|163605|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQ
KEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHT
VPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAG
TKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIA
LSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAI
FD*
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mRNA from alignment at Contig_26:589106..589864+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1944 ID=mRNA_1944|Name=jgi.p|Trimin1|163605|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_26:589106..589864+ (Tribonema minus UTEX_B_3156 )
ATGAAGCTGCCTCCCGTCGCACCACCCGCAATGCACTTCATCAATGCTAA
AGGCAGCAACGTGCCGCAGGAGTTTGCCATTGCAGCACGTGCCAACCCCG
ATGTCATTCCGCAGATGGCGGAAACACCCAAGGAACTGCAGGCCTTACAG
AAAGAGGCGCTGGCAAGGCAATATGTCATCATTGTCGATATGTCCGGCTC
CATGGCGGCAAGGGATGGGAAAGGCACACGCTGGGACTCTGCCCGTTCTG
CTGTTGAAAAGATGGTGGACACAATATTTGCATACGATGTGGATCATACT
GTCCCTCTCTACCTGTTTGACAGCGAGGTCACATTTATCGGTGAGCTCAC
CAAGGCATCGCAGGTCAAGGCTGTTTTCAAGGAGTTCGGTCCAAGGGGGA
CGACAGGATTGGGTGCTGCTCTGCGAGAGGCGCTGAGCACGTATGCTGGC
ACGAAACGGCCCAACTACCAGCTCGTGCCGGGCACAACCTTCATTGTACT
GCTTGACGGCGGCGCAGATGATGAAGCTGATGTAATGCGCGTGCTGCAGG
AGTTTGCAGACCCCAGGAATGGCTACATTGAAAACCACACCCAAATAGCT
CTTTCCTTCGTCCAGGTCGGCGATGACGCGTCAGCATCCGCTTTCCTACA
GAAGCTCGATGACAGCATCACGCCAGACATTTGCGACTTCAAACGCGACG
ACATTCTAACACAATTGGGTGGGCTAGATAGGCTGCTGCATGACGCAATA
TTCGATTAG
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Coding sequence (CDS) from alignment at Contig_26:589106..589864+

>mRNA_1944 ID=mRNA_1944|Name=jgi.p|Trimin1|163605|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_26:589106..589864+ (Tribonema minus UTEX_B_3156 )
ATGAAGCTGCCTCCCGTCGCACCACCCGCAATGCACTTCATCAATGCTAA
AGGCAGCAACGTGCCGCAGGAGTTTGCCATTGCAGCACGTGCCAACCCCG
ATGTCATTCCGCAGATGGCGGAAACACCCAAGGAACTGCAGGCCTTACAG
AAAGAGGCGCTGGCAAGGCAATATGTCATCATTGTCGATATGTCCGGCTC
CATGGCGGCAAGGGATGGGAAAGGCACACGCTGGGACTCTGCCCGTTCTG
CTGTTGAAAAGATGGTGGACACAATATTTGCATACGATGTGGATCATACT
GTCCCTCTCTACCTGTTTGACAGCGAGGTCACATTTATCGGTGAGCTCAC
CAAGGCATCGCAGGTCAAGGCTGTTTTCAAGGAGTTCGGTCCAAGGGGGA
CGACAGGATTGGGTGCTGCTCTGCGAGAGGCGCTGAGCACGTATGCTGGC
ACGAAACGGCCCAACTACCAGCTCGTGCCGGGCACAACCTTCATTGTACT
GCTTGACGGCGGCGCAGATGATGAAGCTGATGTAATGCGCGTGCTGCAGG
AGTTTGCAGACCCCAGGAATGGCTACATTGAAAACCACACCCAAATAGCT
CTTTCCTTCGTCCAGGTCGGCGATGACGCGTCAGCATCCGCTTTCCTACA
GAAGCTCGATGACAGCATCACGCCAGACATTTGCGACTTCAAACGCGACG
ACATTCTAACACAATTGGGTGGGCTAGATAGGCTGCTGCATGACGCAATA
TTCGATTAG
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