mRNA_1978 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A836CI72_9STRA (CheY-like superfamily protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI72_9STRA) HSP 1 Score: 236 bits (602), Expect = 1.770e-78 Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 1
Query: 1 MDTDQSKPLHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSANEDLRMSAMAAGADKFLHKLDHPVRDIVAIVNAVRT 378
M+ DQSKPLHVLIVEDYNLSAQYMSQALKLC+CRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSM+WSGYIVAMSANEDLR SA+AAGADKFLHKLDHPVRDIVAIVNAV+T
Sbjct: 1 MNNDQSKPLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKT 126
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A836CPC2_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPC2_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.500e-38 Identity = 69/120 (57.50%), Postives = 93/120 (77.50%), Query Frame = 1
Query: 34 LIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQ----WSGYIVAMSANEDLRMSAMAAGADKFLHKLDHPVRDIVAIVNAVRTK 381
++VEDY LSA YMSQAL++C C + A +GE A+E+AR +GPFDVVFVDL+MKGMGG+ CI L+SM+ W+ IVAMSA+ +L SA+AAGAD+F+HKL PVRDI A++ +++ K
Sbjct: 1 MLVEDYQLSALYMSQALRMCGCTDVHAALNGECAIELARVKGPFDVVFVDLVMKGMGGVECIRALRSMEHDNGWTQCIVAMSADAELSSSALAAGADRFMHKLAQPVRDIFAMIASIKGK 120
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A835Z4T2_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T2_9STRA) HSP 1 Score: 133 bits (335), Expect = 9.810e-38 Identity = 65/120 (54.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query: 25 LHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQ----WSGYIVAMSANEDLRMSAMAAGADKFLHKLDHPVRDIVAIVNAV 372
L VL++EDY LSA+YM QALKLCNC + IA SGE+A+ + GPFDVVFVDL+M GMGG+ C+ L+ M+ W VAMS++E L+ A+ AGAD+FL+KL HPVR++ I+ V
Sbjct: 6 LLVLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREVGIIIKLV 125
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A2V7KCU7_9BACT (DNA-binding response regulator n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7KCU7_9BACT) HSP 1 Score: 59.3 bits (142), Expect = 4.720e-8 Identity = 39/121 (32.23%), Postives = 68/121 (56.20%), Query Frame = 1
Query: 19 KPLHVLIVEDYNLSAQYMSQAL-KLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSA--NEDLRMSAMAAGADKFLHKLDHPVRDIVAIVNAV 372
KP+H+L+ +D+ + L + N R + A +GE+A++ AR+ P DVV +DL+M GMGG+ + + ++ I+ +SA ED + +AAGA F+ K PV ++ + +V
Sbjct: 11 KPIHILLADDHWAVRAGLHALLDRQANLRVVGEAATGEEALKQARALKP-DVVLMDLVMPGMGGLEAMRRIAALHAGTKILVLSAYLQEDRLLDVLAAGASGFVSK-GSPVENLTRAIRSV 129
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: UPI001C5623D1 (sigma-54 dependent transcriptional regulator n=1 Tax=Pseudohoeflea sp. DP4N28-3 TaxID=2860393 RepID=UPI001C5623D1) HSP 1 Score: 60.1 bits (144), Expect = 5.540e-8 Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 1
Query: 22 PLHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMA-RSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSANEDLR--MSAMAAGADKFLHKLDHPVRDIVAIVNAVRT 378
P HVLIV+D + + + + + + +AE GE A+ M RS G FDVV +DL+M G+GGIA + + ++ + + + AM AGA F K P R ++AI NAVR+
Sbjct: 2 PSHVLIVDDDPVQRRLLKGTCERSGLK-VDLAEDGESAMSMIKRSAGGFDVVVLDLVMPGVGGIAVLEWMAENAPDIPVIVQTGQGGIETVVRAMRAGAHDFAVKPVSPERLLLAIGNAVRS 122
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: UPI001BAD0279 (sigma-54 dependent transcriptional regulator n=1 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI001BAD0279) HSP 1 Score: 59.3 bits (142), Expect = 1.010e-7 Identity = 39/116 (33.62%), Postives = 68/116 (58.62%), Query Frame = 1
Query: 31 VLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSANE--DLRMSAMAAGADKFLHKLDHPVRDIVAIVNAV 372
VL+V+D + + + + QA+ ++ AESGE A++ + P DV+ +DL+M G+GG+A + ++S ++ +V ++A D + AM AGA F K P R +V+I NA+
Sbjct: 5 VLVVDD-DPTQRRLIQAVLEREGFAVAHAESGEAAIDRLVAGAPADVIMLDLIMPGLGGLAALKEMRSRGFNQPVVVLTATGGIDTVVQAMQAGAQDFFVKPASPERILVSIRNAL 119
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A2G5B3R4_COERN (CheY-like protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B3R4_COERN) HSP 1 Score: 57.0 bits (136), Expect = 1.360e-7 Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = 1
Query: 7 TDQSKPLHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEM----ARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSG----YIVAMSAN--EDLRMSAMAAGADKFLHK 327
+D + P+ VL+VED ++ M + L+ N R +A +GE+A+ + A +GP+ +VF+D+ M M GIA ++ ++ S IVA++A+ E R +A++AG + FL K
Sbjct: 2 SDSTPPIRVLLVEDNLINRSIMERFLRHMNVR-YDVASNGEEAIRIVAPAAVGRGPYHIVFMDIQMPIMDGIAATKHIRRLELSVKSPVIIVALTASSLESDRRAALSAGCNDFLTK 117
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A2V8JS96_9BACT (DNA-binding response regulator n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8JS96_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 1.700e-7 Identity = 38/118 (32.20%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 25 LHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSANE--DLRMSAMAAGADKFLHKLDHPVRDIVAIVNAV 372
+ +L+VED A ++S+AL+ N ++ +AESGE+A+EMA + P+D + +D+ + G+ GI L+ + I+ ++A + R+ + AGAD +L K V +++A V A+
Sbjct: 1 MRILVVEDERRVASFVSRALRE-NSYTVDLAESGEKAIEMATAT-PYDSILLDIRLPGLSGIQVCRELRDAKIDTPILMLTARGLVEQRVEGLDAGADDYLTK-PFAVAELLARVRAL 115
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A536WNC6_9PROT (Response regulator transcription factor n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WNC6_9PROT) HSP 1 Score: 55.8 bits (133), Expect = 2.510e-7 Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 19 KPLHVLIVEDYNLSAQYMSQALKLCNCRS----IQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSA--NEDLRMSAMAAGADKFLHKLD-----HPVRDIV 354
K + V++V+D S Q+ S + C + A SG +A+ A ++ P D++F+D+ M GM G+A S++K + IV M+ +E+ R+ A+AAGAD FL K D H V D++
Sbjct: 2 KRIRVMVVDD---SLQFASAVGQFLACNGNFEVLASATSGGEALARASTERP-DLMFIDISMPGMNGLAVTSLIKGRNAAPKIVMMTLEDSEEHRVGAIAAGADAFLPKDDFAHGFHAVLDLL 120
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A536Z360_9PROT (Response regulator transcription factor (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Z360_9PROT) HSP 1 Score: 56.2 bits (134), Expect = 4.430e-7 Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 19 KPLHVLIVEDYNLSAQYMSQALKLCNCRS----IQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSA--NEDLRMSAMAAGADKFLHKLD-----HPVRDIV 354
K + V++V+D S Q+ S + C + A SG +A+ A ++ P D++F+D+ M GM G+A S++K + IV M+ +E+ R+ A+AAGAD FL K D H V D++
Sbjct: 58 KRIRVMVVDD---SLQFASAVGQFLACNDNFEVLASANSGGEALARASTERP-DLMFIDISMPGMNGLAVTSLIKGRNAAPKIVMMTLEDSEEHRIGAIAAGADAFLPKDDFAHGFHAVLDLL 176 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1978 ID=mRNA_1978|Name=jgi.p|Trimin1|163601|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_26:675423..675806- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACACCGATCAATCAAAGCCACTGCATGTCTTGATTGTGGAAGACTAback to top protein sequence of jgi.p|Trimin1|163601 >Trimin1|163601|e_gw1.26.2.1 ID=Trimin1|163601|e_gw1.26.2.1|Name=jgi.p|Trimin1|163601|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp MDTDQSKPLHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARback to top mRNA from alignment at Contig_26:675423..675806- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1978 ID=mRNA_1978|Name=jgi.p|Trimin1|163601|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_26:675423..675806- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:675423..675806- >mRNA_1978 ID=mRNA_1978|Name=jgi.p|Trimin1|163601|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_26:675423..675806- (Tribonema minus UTEX_B_3156 )back to top |