mRNA_1833 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163550
Unique NamemRNA_1833
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163550 vs. uniprot
Match: A0A836CG45_9STRA (Collar domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG45_9STRA)

HSP 1 Score: 233 bits (594), Expect = 2.000e-76
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 
Query:    1 MPTGTILQYAAGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSHTVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGNTGSGSAVSILPPYLVLYYIIKV 462
            MPTGTILQYAAGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSHTVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGNTGSGSAVSILPPYLVLYYIIKV
Sbjct:    1 MPTGTILQYAAGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSHTVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGNTGSGSAVSILPPYLVLYYIIKV 154
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BLAST of jgi.p|Trimin1|163550 vs. uniprot
Match: UPI001FB45959 (tail fiber protein n=1 Tax=Agromyces sp. CFWR-12 TaxID=2929802 RepID=UPI001FB45959)

HSP 1 Score: 107 bits (266), Expect = 3.780e-26
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 1 
Query:    4 PTGTILQYAAGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSHTV-SDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGNTGSGSAVSILPPYLVLYYIIK 459
            PTG +  +A  +AP+G+L C G  VSRTTY+ LFAV+GTTY  G   ST F LPD+RGR P+   +  T FN + K+GG  + TL+VA++PSHSH + S                              + +TG G A + L PY+ L +IIK
Sbjct:   44 PTGEVKIFAGASAPSGYLLCQGQAVSRTTYAALFAVLGTTYGTGDGTST-FNLPDLRGRAPVGYSSGETEFNTVGKTGGEKTHTLTVAEMPSHSHNIKSQAANYPAGAFDDQGYQRSSTPNYTNNNTANIASTGGGGAHNNLQPYMTLNFIIK 195
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BLAST of jgi.p|Trimin1|163550 vs. uniprot
Match: A0A4Y6EFV7_9CAUD (Minor tail protein n=2 Tax=Microbacterium virus TinyTimothy TaxID=2845596 RepID=A0A4Y6EFV7_9CAUD)

HSP 1 Score: 111 bits (278), Expect = 6.560e-26
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 1 
Query:    1 MPTGTILQYAAGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSHTVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-------LGNTGSGSAVSILPPYLVLYYIIK 459
            +PTG +L +A  T P G+L C+G  VSRTTY+ LFA++GT Y  G   +T F LPD+RGR P+ +DTT T F+ L + GG+ + TLSVA++PSH+H                                +         NTG G A + L PYLVL YIIK
Sbjct:  322 LPTGVVLPFAGSTVPTGYLLCNGQAVSRTTYAGLFAILGTAYGAGNGTTT-FNLPDLRGRTPVGQDTTQTEFDVLGEQGGSKTHTLSVAEMPSHTHDAGTNADGFASHRTNTTGGYSTTHGNTGGAAGSDVYSYRQPSNTGGGGAHNNLQPYLVLNYIIK 480
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BLAST of jgi.p|Trimin1|163550 vs. uniprot
Match: A0A7C5Z090_9CHLR (Collar domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5Z090_9CHLR)

HSP 1 Score: 104 bits (259), Expect = 4.940e-24
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 1 
Query:    1 MPTGTILQYAAGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSHTVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGNTGSGSAVSILPPYLVLYYIIK 459
            MP G +L +   +APAG+  CDGS VSRTT++ LF++IGTTY  G   ST F LP+ +GR+P+  D     F+AL ++GG  + TL+V ++PSH+H  +D                            T G  G G   + LPPYLV+ YIIK
Sbjct:  169 MPVGVMLPFGGSSAPAGYFLCDGSAVSRTTFARLFSIIGTTYGPG-DGSTTFNLPNFKGRMPVGLDAAQPEFDALGETGGEKTHTLTVDEIPSHTHEQADGAAATFGSGSTSGSAGSATPKY------TTGAAGGGQPHNNLPPYLVVNYIIK 314
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BLAST of jgi.p|Trimin1|163550 vs. uniprot
Match: A0A6G8R162_9CAUD (Minor tail protein n=1 Tax=Microbacterium phage Arete TaxID=2713257 RepID=A0A6G8R162_9CAUD)

HSP 1 Score: 102 bits (253), Expect = 1.480e-22
Identity = 69/168 (41.07%), Postives = 82/168 (48.81%), Query Frame = 1 
Query:    1 MPTGTILQYA--AGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSH------------TVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGNTGSGSAVSILPPYLVLYYIIKV 462
            MPTGT+L +A  + T PA FL C G  VSRTTY+TLF VIGTTY  G   ST F +PD+R RVP         F  L   GGA +VTL+ AQ+PSH+H            T  D                             L NTG   A + L PYLVL +IIK+
Sbjct:  267 MPTGTVLPWAGTSNTVPAEFLFCTGQAVSRTTYATLFGVIGTTYGTG-DGSTTFNVPDLRSRVPAGHSAVDADFQTLGGEGGAKTVTLTEAQMPSHTHGWTKVNAGTTTETSFDLPRHHRTTANGGEKTFTTGTTGEVVSYWNLANTGGSQAHNNLQPYLVLRFIIKI 433
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BLAST of jgi.p|Trimin1|163550 vs. uniprot
Match: A0A3S0TER0_9MICO (Collar domain-containing protein n=1 Tax=Microbacterium sp. HSID17254 TaxID=2419509 RepID=A0A3S0TER0_9MICO)

HSP 1 Score: 101 bits (252), Expect = 4.090e-22
Identity = 67/164 (40.85%), Postives = 87/164 (53.05%), Query Frame = 1 
Query:    4 PTGTILQYAAGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQ-------LPSHSHTVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-----LGNTGSGSAVSILPPYLVLYYIIK 459
            P G +  YA GTAPAG+L CDGS VSRT Y+ LF+ IGT Y VG  +ST F LPD+RGRVP+  D+  T F+ L K+GGA + +L+ A+         +HSH  S                             T     + ++GSGS  + L PYLVL +IIK
Sbjct:  487 PVGIVTAYAGGTAPAGWLLCDGSAVSRTVYAALFSAIGTAYGVGNGSST-FNLPDLRGRVPVGNDSGQTEFSTLGKTGGAKTHSLTSAENGPHTHTQAAHSHQASGNEPFVAPGTGTGANVTTGGGGYVLKSTTTSVAPSINSSGSGSPHNNLQPYLVLNHIIK 649
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BLAST of jgi.p|Trimin1|163550 vs. uniprot
Match: A0A369RCN8_9CHLB (Collar domain-containing protein n=2 Tax=Prosthecochloris sp. ZM TaxID=2283143 RepID=A0A369RCN8_9CHLB)

HSP 1 Score: 96.7 bits (239), Expect = 7.070e-22
Identity = 62/152 (40.79%), Postives = 81/152 (53.29%), Query Frame = 1 
Query:    4 PTGTILQYAAGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSHTVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGNTGSGSAVSILPPYLVLYYIIK 459
            P G +L +    APAG++ CDGS VSR+TYS LFAVIGT +  G  A+T F LPD RGRVPI RD +   FNA+  +GG     LS+A++P+H+H   D                            +   TG G A + L PYLV+  I+K
Sbjct:   72 PLGAMLDWPLNEAPAGWIICDGSEVSRSTYSDLFAVIGTAFGGGDGATT-FNLPDFRGRVPIGRDISDDDFNAIGNTGGEKRHELSIAEMPAHTHKYHDKYQGEGGNGHGDEAPISTNYKDDERESDS---TGGGVAHNNLQPYLVVNKIMK 219
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BLAST of jgi.p|Trimin1|163550 vs. uniprot
Match: E4T5W3_PALPW (Tail Collar domain protein n=2 Tax=Paludibacter TaxID=346096 RepID=E4T5W3_PALPW)

HSP 1 Score: 98.2 bits (243), Expect = 7.030e-21
Identity = 62/147 (42.18%), Postives = 81/147 (55.10%), Query Frame = 1 
Query:   31 AGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSH-TVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLG---NTGSGSAVSILPPYLVLYYIIK 459
            A T PAG+L CDGS +SRTTY+ LF V+GTTY  G   ST F LP+++GRVP+  D + T FNAL K+GG  + TL++A++PSH+H   +                               G   N G G A + L PY+VL YIIK
Sbjct:  752 ATTLPAGWLVCDGSAISRTTYANLFLVLGTTYGAG-DGSTTFNLPNLKGRVPVGYDGSQTEFNALNKTGGEKTHTLTIAEMPSHNHYNGNGGYNVLLSYGGGANTTDGLDNTGGEPDVHNFGYEQNAGGGQAHNNLQPYIVLNYIIK 897
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BLAST of jgi.p|Trimin1|163550 vs. uniprot
Match: UPI001964F43C (tail fiber protein n=1 Tax=Microbacterium hominis TaxID=162426 RepID=UPI001964F43C)

HSP 1 Score: 92.4 bits (228), Expect = 1.520e-20
Identity = 63/164 (38.41%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:    4 PTGTILQYAA--GTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSH-----TVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLG-----NTGSGSAVSILPPYLVLYYIIK 459
            P G +  +A   G+ P+G+L  DGS +SRT +S LFAV+GTTY  G   +T F LP++RGRV +  D T T FN+LAK+GGA + TL+V ++P+H H     T+S                             T G     N G G A + L PY+ L +IIK
Sbjct:   26 PAGLVSPFAGATGSVPSGWLLADGSAISRTDFSDLFAVVGTTYGTGNGTTT-FNLPNLRGRVAVGLDVTQTEFNSLAKTGGAKTHTLTVNEIPAHDHDFEGQTISWGATGNVHFDNVQAIAGASGGNGIYTWQNTDGWTDTYNRGGGQAHNNLQPYVALNFIIK 188
[Close]
BLAST of jgi.p|Trimin1|163550 vs. uniprot
Match: UPI001FB467FB (DUF859 domain-containing protein n=1 Tax=Agromyces sp. CFWR-12 TaxID=2929802 RepID=UPI001FB467FB)

HSP 1 Score: 96.3 bits (238), Expect = 3.130e-20
Identity = 61/156 (39.10%), Postives = 80/156 (51.28%), Query Frame = 1 
Query:    1 MPTGTILQYA--AGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPASTHFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSHTVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGNTGSGSAVSILPPYLVLYYIIKV 462
            +P GT+   A  A T PAG+L C G  V R  Y TLFA IGTTY  G   ST F LP++ GR P+  D+  T FNA+ K+GGA + TL+ A++PSH+HT                               T  + G G A + L PY+ L +IIK+
Sbjct:  489 LPAGTVQMSAVTAATPPAGWLFCRGQAVGREQYPTLFAAIGTTYGAG-DGSTTFNLPNLNGRAPVGYDSAQTEFNAVGKTGGAKTHTLTTAEMPSHTHTFQSDTQADAAGFGGIASTKRPAEVGYTQYHPT-SSVGGGGAHNNLQPYIALNFIIKI 642
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163550 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG45_9STRA2.000e-76100.00Collar domain-containing protein n=1 Tax=Tribonema... [more]
UPI001FB459593.780e-2640.52tail fiber protein n=1 Tax=Agromyces sp. CFWR-12 T... [more]
A0A4Y6EFV7_9CAUD6.560e-2640.63Minor tail protein n=2 Tax=Microbacterium virus Ti... [more]
A0A7C5Z090_9CHLR4.940e-2439.87Collar domain-containing protein n=1 Tax=Anaerolin... [more]
A0A6G8R162_9CAUD1.480e-2241.07Minor tail protein n=1 Tax=Microbacterium phage Ar... [more]
A0A3S0TER0_9MICO4.090e-2240.85Collar domain-containing protein n=1 Tax=Microbact... [more]
A0A369RCN8_9CHLB7.070e-2240.79Collar domain-containing protein n=2 Tax=Prostheco... [more]
E4T5W3_PALPW7.030e-2142.18Tail Collar domain protein n=2 Tax=Paludibacter Ta... [more]
UPI001964F43C1.520e-2038.41tail fiber protein n=1 Tax=Microbacterium hominis ... [more]
UPI001FB467FB3.130e-2039.10DUF859 domain-containing protein n=1 Tax=Agromyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:248592..249152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163550|e_gw1.26.1.1
Descriptiontail collar domain protein
COG categoryM
Max annot lvl2|Bacteria
EggNOG OGsCOG4675@1|root,COG4675@2|Bacteria
Evalue1.15e-21
Seed ortholog694427.Palpr_1970
Hectar predicted targeting categoryother localisation
TranscriptId163872
TrackFilteredModels1
ProteinId163550
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163550gene_1833Tribonema minus UTEX_B_3156 geneContig_26 248592..249152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163550Trimin1|163550|e_gw1.26.1.1Tribonema minus UTEX_B_3156 polypeptideContig_26 248592..249152 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1833_2exon_1833_2Tribonema minus UTEX_B_3156 exonContig_26 248592..248711 -
exon_1833_1exon_1833_1Tribonema minus UTEX_B_3156 exonContig_26 248808..249152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1833CDS_1833Tribonema minus UTEX_B_3156 CDSContig_26 248808..249152 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1833 ID=mRNA_1833|Name=jgi.p|Trimin1|163550|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_26:248592..249152- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACGGGGACGATACTTCAATATGCGGCGGGGACGGCACCTGCTGG
ATTTCTGGCCTGCGATGGATCCACAGTGTCGCGGACAACGTATTCAACAC
TGTTTGCGGTGATAGGGACTACTTACAACGTGGGTACACCCGCATCAACA
CACTTCATGCTCCCTGACATGCGAGGCCGGGTACCTATCATGCGAGACAC
TACCGTCACAACTTTTAATGCCCTTGCCAAGTCGGGTGGCGCGACCTCTG
TGACTCTGAGCGTAGCACAGCTACCATCTCATAGCCACACAGTGTCGGAT
CCGACACACGCTCACACTATATATGACCCCGGGCACACCCACTCAACCAC
AGGGATCGGTATCTACGCTGCCTCCACTGGCATTACCCTCGGCAACACGG
GATCAGGGTCGGCTGTGTCCATCTTGCCGCCATACCTGGTGTTGTATTAC
ATCATAAAGGTCTAG
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protein sequence of jgi.p|Trimin1|163550

>Trimin1|163550|e_gw1.26.1.1 ID=Trimin1|163550|e_gw1.26.1.1|Name=jgi.p|Trimin1|163550|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
MPTGTILQYAAGTAPAGFLACDGSTVSRTTYSTLFAVIGTTYNVGTPAST
HFMLPDMRGRVPIMRDTTVTTFNALAKSGGATSVTLSVAQLPSHSHTVSD
PTHAHTIYDPGHTHSTTGIGIYAASTGITLGNTGSGSAVSILPPYLVLYY
IIKV*
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mRNA from alignment at Contig_26:248592..249152-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1833 ID=mRNA_1833|Name=jgi.p|Trimin1|163550|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=561bp|location=Sequence derived from alignment at Contig_26:248592..249152- (Tribonema minus UTEX_B_3156 )
ATGCCGACGGGGACGATACTTCAATATGCGGCGGGGACGGCACCTGCTGG
ATTTCTGGCCTGCGATGGATCCACAGTGTCGCGGACAACGTATTCAACAC
TGTTTGCGGTGATAGGGACTACTTACAACGTGGGTACACCCGCATCAACA
CACTTCATGCTCCCTGACATGCGAGGCCGGGTACCTATCATGCGAGACAC
TACCGTCACAACTTTTAATGCCCTTGCCAAGTCGGGTGGCGCGACCTCTG
TGACTCTGAGCGTAGCACAGCTACCATCTCATAGCCACACAGTGTCGGAT
CCGACACACGCTCACACTATATATGACCCCGGGCACACCCACTCAGTGCC
GACCAACACCGACAATGGTTCTACGAACCCGGCAACTTTGTCAAATTGGG
ATACAAACCTCAATGCGACCGATGTCACTACTGGTTCAAAGACCACAGGG
ATCGGTATCTACGCTGCCTCCACTGGCATTACCCTCGGCAACACGGGATC
AGGGTCGGCTGTGTCCATCTTGCCGCCATACCTGGTGTTGTATTACATCA
TAAAGGTCTAG
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Coding sequence (CDS) from alignment at Contig_26:248592..249152-

>mRNA_1833 ID=mRNA_1833|Name=jgi.p|Trimin1|163550|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_26:248592..249152- (Tribonema minus UTEX_B_3156 )
ATGCCGACGGGGACGATACTTCAATATGCGGCGGGGACGGCACCTGCTGG
ATTTCTGGCCTGCGATGGATCCACAGTGTCGCGGACAACGTATTCAACAC
TGTTTGCGGTGATAGGGACTACTTACAACGTGGGTACACCCGCATCAACA
CACTTCATGCTCCCTGACATGCGAGGCCGGGTACCTATCATGCGAGACAC
TACCGTCACAACTTTTAATGCCCTTGCCAAGTCGGGTGGCGCGACCTCTG
TGACTCTGAGCGTAGCACAGCTACCATCTCATAGCCACACAGTGTCGGAT
CCGACACACGCTCACACTATATATGACCCCGGGCACACCCACTCAACCAC
AGGGATCGGTATCTACGCTGCCTCCACTGGCATTACCCTCGGCAACACGG
GATCAGGGTCGGCTGTGTCCATCTTGCCGCCATACCTGGTGTTGTATTAC
ATCATAAAGGTCTAG
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