mRNA_1853 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A836CHL5_9STRA (Collar domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL5_9STRA) HSP 1 Score: 227 bits (579), Expect = 7.950e-75 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 Query: 1 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVNTDHTLGTSIGSETHTLSMSEIPSHTHSATIDAAXXXXXXXXXXXXXXXGHNATSVTQGLAFSDGLHTMTGSDDQNPSGTELNLNGA 399 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVNTDHTLGTSIGSETHTLSMSEIPSHTHSATIDAAXXXXXXXXXXXXXXXGHNATSVTQGLAFSDGLHTMTGSDDQNPSGTELNLNGA Sbjct: 1 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVNTDHTLGTSIGSETHTLSMSEIPSHTHSATIDAAXXXXXXXXXXXXXXXGHNATSVTQGLAFSDGLHTMTGSDDQNPSGTELNLNGA 133
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A835ZHE3_9STRA (Collar domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE3_9STRA) HSP 1 Score: 147 bits (370), Expect = 5.070e-41 Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 1 Query: 1 WLKCDGRSIARTAFPLLFQLLGVSFASADSST-FNLPDARGHVVAAVNTDHTLGTSIGSETHTLSMSEIPSHTHSATIDAAXXXXXXXXXXXXXXXGHNATSVTQGLAFSDGLHTMTGSDDQNPSGTELNLNGA 399 WLKCDGRS++R AFP+LF +LG +F +A +ST F LPDARG V+A+V+ DH +G S G+ETH LS+SEIPSH+H ATID+A XXXXXXXXXXXXXX ATS TQG+ SDG +TM GSD +NPSGTELNL GA Sbjct: 19 WLKCDGRSLSRVAFPVLFAMLGNTFGAASTSTTFKLPDARGRVIASVSGDHAVGGSSGAETHALSVSEIPSHSHVATIDSAGXXXXXXXXXXXXXXXXXATSSTQGIVVSDGANTMVGSDSENPSGTELNLGGA 152
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A6C0DW18_9ZZZZ (Collar domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DW18_9ZZZZ) HSP 1 Score: 87.4 bits (215), Expect = 6.210e-19 Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 1 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVNTD-----HTLGTSIGSETHTLSMSEIPSHTHS 222 WLKCDGRS++RT + LF+++G +F + DS TF LPD RG V+ + T +LG +G+ETHTL++ EIPSHTH+ Sbjct: 51 WLKCDGRSLSRTLYAKLFEVIGTAFGNDDSETFKLPDCRGRVLGTIGTGAGLTARSLGAMVGAETHTLTVGEIPSHTHT 129
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A835ZKI7_9STRA (Collar domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.930e-15 Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = 1 Query: 1 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVN------TDHTLGTSIGSETHTLSMSEIPSHTHSATIDAAXXXXXXXXXXXXXXXGHNATSVTQGLAFSDGLHTMTGSDDQNPSGTELNLN 393 WL CDGR ++R + LF ++G F S +TFNLPD R + A + G ++G+ETHTL++ E+PSH+H+ T + XXXXXXXXXXXXXXX NAT GL +G TMT SD S E+N N Sbjct: 40 WLVCDGRQLSRETYKDLFDVIGTDFGSGCGNTFNLPDCRSRGIGACGDGGNSLSARARGDAVGAETHTLTVGEMPSHSHTGTTSSNXXXXXXXXXXXXXXXXXNATGDNIGLTVINGYGTMTSSD---ASSGEINNN 173
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A6C0ALD8_9ZZZZ (Collar domain-containing protein n=2 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ALD8_9ZZZZ) HSP 1 Score: 78.6 bits (192), Expect = 3.910e-15 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 1 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVN-----TDHTLGTSIGSETHTLSMSEIPSHTHSAT 228 W+ CDGRS++RT + L+ ++G+ F S SSTF +PD RG V + T+ LGTS+G E HTL++ E+P+H H T Sbjct: 64 WMICDGRSLSRTDYEELYDIIGIQFGSNHSSTFKIPDMRGRVAGGIGDGPSTTNRPLGTSLGEEEHTLTVGEMPTHNHGVT 144
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A5B8XJ48_9RICK (Phage tail collar domain protein n=1 Tax=Candidatus Deianiraea vastatrix TaxID=2163644 RepID=A0A5B8XJ48_9RICK) HSP 1 Score: 79.7 bits (195), Expect = 8.980e-15 Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 1 Query: 1 WLKCDGRSIARTAFPLLFQLLGVSFASADSS-TFNLPDARGHVVAAVN-----TDHTLGTSIGSETHTLSMSEIPSHTHS 222 WL C+G++++RT + LF LLG +F + D + TFNLPD RG AA+ T+ TLG +G+ETHTL+++E+PSH+HS Sbjct: 449 WLLCNGQAVSRTTYSELFALLGTNFGAGDGTLTFNLPDFRGRTFAAIGQGSGLTNRTLGQKVGAETHTLTVNEMPSHSHS 528
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A8K0YSH4_9CAUD (Minor tail protein n=1 Tax=Microbacterium phage PoRanda TaxID=2743924 RepID=A0A8K0YSH4_9CAUD) HSP 1 Score: 74.7 bits (182), Expect = 4.340e-14 Identity = 38/84 (45.24%), Postives = 61/84 (72.62%), Query Frame = 1 Query: 1 WLKCDGRSIARTAFPLLFQLLGVSFASAD-SSTFNLPDARGHVVAAVNTDHT----LGTSIGSETHTLSMSEIPSHTHSATIDA 237 +L DGR+I+RT +P LF L+GV++ + S+TFN+PDARG + +++T T LG + G++THTL+++++PSHTH A +A Sbjct: 42 YLPMDGRAISRTEYPALFALIGVTYGPGNGSTTFNVPDARGRALVSIDTAQTEFNVLGKTGGAKTHTLTVAQMPSHTHGAGANA 125
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: UPI00115D163A (phage tail fiber protein n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115D163A) HSP 1 Score: 74.7 bits (182), Expect = 5.020e-13 Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 1 Query: 1 WLKCDGRSIARTAFPLLFQLLGVSFASAD-SSTFNLPDARGHVVAAVN-----TDHTLGTSIGSETHTLSMSEIPSHTHS 222 WL C G++++RT + LF ++G ++ + + SSTFNLPD RG V T+ LG +G+ETHTLS++EIPSH+HS Sbjct: 425 WLLCQGQAVSRTTYSALFAVIGTTYGAGNGSSTFNLPDFRGRAPIGVGQGSGLTNRALGARVGAETHTLSINEIPSHSHS 504
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: UPI001B8B5580 (tail fiber protein n=1 Tax=Magnetospirillum sp. J10 TaxID=611300 RepID=UPI001B8B5580) HSP 1 Score: 71.2 bits (173), Expect = 1.570e-12 Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 1 WLKCDGRSIARTAFPLLFQLLGVSFASAD-SSTFNLPDARGHVVAAVN-----TDHTLGTSIGSETHTLSMSEIPSHTHSATI 231 WL CDG ++RT + LF +LG +F + D S+TF LPD RG T+ T+G IG+ETH LS++E+PSH+H + Sbjct: 86 WLICDGAVVSRTTYAALFTVLGATFGAGDGSTTFALPDLRGRAAIGAGLGTNLTNRTIGGKIGTETHILSIAEMPSHSHGCAV 168
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A0U4JXW2_9CAUD (Tail protein n=1 Tax=Arthrobacter phage Gordon TaxID=1772298 RepID=A0A0U4JXW2_9CAUD) HSP 1 Score: 72.0 bits (175), Expect = 4.180e-12 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 1 WLKCDGRSIARTAFPLLFQLLGVSFASAD-SSTFNLPDARGHVVAAVNTDHT----LGTSIGSETHTLSMSEIPSHTH 219 W+ CDG +++RT FP L+ +LG + + D S+TFNLP+ +G V V+ T LG GS+THTLS++E+PSHTH Sbjct: 76 WMFCDGAAVSRTNFPDLYNILGTMYGAGDGSTTFNLPNLKGRVPVGVDVAQTEFEVLGRLGGSKTHTLSVAELPSHTH 153 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1853 ID=mRNA_1853|Name=jgi.p|Trimin1|137109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_26:313272..313670- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGGCTCAAATGCGACGGCAGGTCCATAGCACGCACAGCATTTCCCCTGCTback to top protein sequence of jgi.p|Trimin1|137109 >Trimin1|137109|gw1.26.108.1 ID=Trimin1|137109|gw1.26.108.1|Name=jgi.p|Trimin1|137109|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVNTDHback to top mRNA from alignment at Contig_26:313272..313670- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1853 ID=mRNA_1853|Name=jgi.p|Trimin1|137109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_26:313272..313670- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:313272..313670- >mRNA_1853 ID=mRNA_1853|Name=jgi.p|Trimin1|137109|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_26:313272..313670- (Tribonema minus UTEX_B_3156 )back to top |