Trimin1|354495|estExt_Genemark1.C_Ctg_2550010 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354495
Unique NameTrimin1|354495|estExt_Genemark1.C_Ctg_2550010
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length361
Homology
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BLAST of jgi.p|Trimin1|354495 vs. uniprot
Match: A0A836CGC4_9STRA (PRA1 family protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC4_9STRA)

HSP 1 Score: 668 bits (1723), Expect = 1.170e-241
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0 
Query:    1 MANSSLAEAKAQLQAMLGEVRPWAEFVGPVAPPPKWTLPDIQRRLVANTRFFKANYALLVALMSAYYIVTSPGLLLTLLVCLMLYGAVLLTRRKNYVFMNGAVIVTDTVKMGVATVVTVILLGAMGYLFALQWAVSLGGLVCLAHALLRPPVARALLTQRSEADASAGVRGGDIEGGPGGLGLDDPRNMPANANMRLRSRPFGAPAEPLPGAPIGMPKNRCVSPSNFEIGGVQGLCNVYVSTDSCYIHPQAISIVKSAFAALDFSAQAHRSQSACSSEPLTMRTPRASAAGERVAVTLVAGGRPAYIQCLVRPGAVAAAATAVALLPSPQWGCLGGGXXXXXXXLARGRGYAADYGGAVA 360
            MANSSLAEAKAQLQAMLGEVRPWAEFVGPVAPPPKWTLPDIQRRLVANTRFFKANYALLVALMSAYYIVTSPGLLLTLLVCLMLYGAVLLTRRKNYVFMNGAVIVTDTVKMGVATVVTVILLGAMGYLFALQWAVSLGGLVCLAHALLRPPVARALLTQRSEADASAGVRGGDIEGGPGGLGLDDPRNMPANANMRLRSRPFGAPAEPLPGAPIGMPKNRCVSPSNFEIGGVQGLCNVYVSTDSCYIHPQAISIVKSAFAALDFSAQAHRSQSACSSEPLTMRTPRASAAGERVAVTLVAGGRPAYIQCLVRPGAVAAAATAVALLPSPQWGCLGGGXXXXXXXLARGRGYAADYGGAVA
Sbjct:    1 MANSSLAEAKAQLQAMLGEVRPWAEFVGPVAPPPKWTLPDIQRRLVANTRFFKANYALLVALMSAYYIVTSPGLLLTLLVCLMLYGAVLLTRRKNYVFMNGAVIVTDTVKMGVATVVTVILLGAMGYLFALQWAVSLGGLVCLAHALLRPPVARALLTQRSEADASAGVRGGDIEGGPGGLGLDDPRNMPANANMRLRSRPFGAPAEPLPGAPIGMPKNRCVSPSNFEIGGVQGLCNVYVSTDSCYIHPQAISIVKSAFAALDFSAQAHRSQSACSSEPLTMRTPRASAAGERVAVTLVAGGRPAYIQCLVRPGAVAAAATAVALLPSPQWGCLGGGXXXXXXXLARGRGYAADYGGAVA 360
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BLAST of jgi.p|Trimin1|354495 vs. uniprot
Match: A0A836CIX2_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.150e-11
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0 
Query:  291 GERVAVTLVA----GGRPAYIQCLVRPGAVAAAATAVALLPSPQWGCLGG 336
            G RVAVTLVA     GRPAYIQCLVRPGAVAAAA AVA LPSPQWGCLGG
Sbjct:  429 GGRVAVTLVAVTDSRGRPAYIQCLVRPGAVAAAAAAVAPLPSPQWGCLGG 478
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354495 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CGC4_9STRA1.170e-241100.00PRA1 family protein-domain-containing protein n=1 ... [more]
A0A836CIX2_9STRA2.150e-1184.00BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004895Prenylated rab acceptor PRA1PFAMPF03208PRA1coord: 17..153
e-value: 4.0E-21
score: 75.2
IPR004895Prenylated rab acceptor PRA1PANTHERPTHR19317PRENYLATED RAB ACCEPTOR 1-RELATEDcoord: 5..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_255contigContig_255:69000..72290 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354495mRNA_18280Tribonema minus UTEX_B_3156 mRNAContig_255 68886..72290 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354495|estExt_Genemark1.C_Ctg_2550010 ID=Trimin1|354495|estExt_Genemark1.C_Ctg_2550010|Name=jgi.p|Trimin1|354495|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=361bp
MANSSLAEAKAQLQAMLGEVRPWAEFVGPVAPPPKWTLPDIQRRLVANTR
FFKANYALLVALMSAYYIVTSPGLLLTLLVCLMLYGAVLLTRRKNYVFMN
GAVIVTDTVKMGVATVVTVILLGAMGYLFALQWAVSLGGLVCLAHALLRP
PVARALLTQRSEADASAGVRGGDIEGGPGGLGLDDPRNMPANANMRLRSR
PFGAPAEPLPGAPIGMPKNRCVSPSNFEIGGVQGLCNVYVSTDSCYIHPQ
AISIVKSAFAALDFSAQAHRSQSACSSEPLTMRTPRASAAGERVAVTLVA
GGRPAYIQCLVRPGAVAAAATAVALLPSPQWGCLGGGGAGGAGALARGRG
YAADYGGAVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004895Prenylated_rab_accept_PRA1