Trimin1|354479|estExt_Genemark1.C_Ctg_2530019 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354479
Unique Name	Trimin1\|354479\|estExt_Genemark1.C_Ctg_2530019
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	365

Homology

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BLAST of jgi.p|Trimin1|354479 vs. uniprot
Match: A0A835Z8J2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J2_9STRA)

HSP 1 Score: 510 bits (1313), Expect = 4.290e-179
Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 0

Query:    1 MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSEKILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTKKXXXXXXXXXXXXXXXQQPIEDAGAAAAIFRERISDGDHTPSQDDANDAINPAAVLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESGEGGWRGQRRGARGEGGWGRXXXXXXXXXXXXXXXXXXXXXXQAAPRMSKFKLRRLGLDPDAAV 364
            MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSEKILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTKKXXXXXXXXXXXXXXXQQPIEDAGAAAAIFRERISDGDHTPSQDDANDAINPAAVLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESGEGGWRGQRRGARGEGGWGRXXXXXXXXXXXXXXXXXXXXXXQAAPRMSKFKLRRLGLDPDAAV
Sbjct:    1 MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSEKILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTKKXXXXXXXXXXXXXXXQQPIEDAGAAAAIFRERISDGDHTPSQDDANDAINPAAVLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESGEGGWRGQRRGARGEGGWGRXXXXXXXXXXXXXXXXXXXXXXQAAPRMSKFKLRRLGLDPDAAV 364

[Close]

BLAST of jgi.p|Trimin1|354479 vs. uniprot
Match: A0A836CN52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN52_9STRA)

HSP 1 Score: 306 bits (784), Expect = 4.410e-99
Identity = 245/367 (66.76%), Postives = 245/367 (66.76%), Query Frame = 0

Query:    1 MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSE---------------------------KILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQ------------------------------------ELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTKKXXXXXXXXXXXXXXXQQPIEDAGAAAAIFRERISDGDHTPSQDDANDAINPAAVLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESGEGG 304
            MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSE                           KILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQ                                    ELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTK                                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESG GG
Sbjct:    9 MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSESGSAILEIREWIDDAGAEIKSEIVDLGKILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQVGEPAAGAGAPEDSTHARRQPPLDADGEAALTARLEELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTK-------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESGGGG 326

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354479 vs. uniprot

BLAST of jgi.p|Trimin1|354479 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z8J2_9STRA	4.290e-179	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CN52_9STRA	4.410e-99	66.76	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..346
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_253	contig	Contig_253:106330..108015 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354479	mRNA_17503	Tribonema minus UTEX_B_3156	mRNA	Contig_253 106330..108208 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354479|estExt_Genemark1.C_Ctg_2530019 ID=Trimin1|354479|estExt_Genemark1.C_Ctg_2530019|Name=jgi.p|Trimin1|354479|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=365bp
MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSEKILKASPAAAKK
LYGDDSEAAIGEPTGSAAADVAAPQELERLEADQEAEESEYKAKGIVGKG
WGKGFFGAGSQKTKKRPPQQQQQQPMPAPQQQPIEDAGAAAAIFRERISD
GDHTPSQDDANDAINPAAVLAGAAAAAAAAPQETAASEPAAPPASAAAAA
HTADSAADAPPPPPARAAHGGRERKSVSFDPVVREREIPARAPRPQSDAV
NDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYES
GEGGWRGQRRGARGEGGWGRGQGQPMQRQQQQQQLQQQQQQPQAAPRMSK
FKLRRLGLDPDAAV*