mRNA_17503 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354479
Unique NamemRNA_17503
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354479 vs. uniprot
Match: A0A835Z8J2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J2_9STRA)

HSP 1 Score: 509 bits (1312), Expect = 6.980e-178
Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 1 
Query:    1 MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSEKILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTKKXXXXXXXXXXXXXXXQQPIEDAGAAAAIFRERISDGDHTPSQDDANDAINPAAVLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESGEGGWRGQRRGARGEGGWGRXXXXXXXXXXXXXXXXXXXXXXQAAPRMSKFKLRRLGLDPDAAV 1092
            MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSEKILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTKKXXXXXXXXXXXXXXXQQPIEDAGAAAAIFRERISDGDHTPSQDDANDAINPAAVLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESGEGGWRGQRRGARGEGGWGRXXXXXXXXXXXXXXXXXXXXXXQAAPRMSKFKLRRLGLDPDAAV
Sbjct:    1 MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSEKILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTKKXXXXXXXXXXXXXXXQQPIEDAGAAAAIFRERISDGDHTPSQDDANDAINPAAVLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESGEGGWRGQRRGARGEGGWGRXXXXXXXXXXXXXXXXXXXXXXQAAPRMSKFKLRRLGLDPDAAV 364
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BLAST of jgi.p|Trimin1|354479 vs. uniprot
Match: A0A836CN52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN52_9STRA)

HSP 1 Score: 306 bits (784), Expect = 3.820e-98
Identity = 245/367 (66.76%), Postives = 245/367 (66.76%), Query Frame = 1 
Query:    1 MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSE---------------------------KILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQ------------------------------------ELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTKKXXXXXXXXXXXXXXXQQPIEDAGAAAAIFRERISDGDHTPSQDDANDAINPAAVLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESGEGG 912
            MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSE                           KILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQ                                    ELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTK                                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESG GG
Sbjct:    9 MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSESGSAILEIREWIDDAGAEIKSEIVDLGKILKASPAAAKKLYGDDSEAAIGEPTGSAAADVAAPQVGEPAAGAGAPEDSTHARRQPPLDADGEAALTARLEELERLEADQEAEESEYKAKGIVGKGWGKGFFGAGSQKTK-------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAHGGRERKSVSFDPVVREREIPARAPRPQSDAVNDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYESGGGG 326
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354479 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z8J2_9STRA6.980e-178100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CN52_9STRA3.820e-9866.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_253contigContig_253:106330..108208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354479|estExt_Genemark1.C_Ctg_2530019
Hectar predicted targeting categoryother localisation
TranscriptId354801
TrackFilteredModels1
ProteinId354479
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354479gene_17503Tribonema minus UTEX_B_3156 geneContig_253 106330..108208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354479Trimin1|354479|estExt_Genemark1.C_Ctg_2530019Tribonema minus UTEX_B_3156 polypeptideContig_253 106330..108015 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17503_1exon_17503_1Tribonema minus UTEX_B_3156 exonContig_253 106330..106442 +
exon_17503_2exon_17503_2Tribonema minus UTEX_B_3156 exonContig_253 106523..106634 +
exon_17503_3exon_17503_3Tribonema minus UTEX_B_3156 exonContig_253 106743..107057 +
exon_17503_4exon_17503_4Tribonema minus UTEX_B_3156 exonContig_253 107411..107842 +
exon_17503_5exon_17503_5Tribonema minus UTEX_B_3156 exonContig_253 107893..108208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17503CDS_17503Tribonema minus UTEX_B_3156 CDSContig_253 106330..106442 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17503UTR3_17503Tribonema minus UTEX_B_3156 three_prime_UTRContig_253 108016..108208 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17503 ID=mRNA_17503|Name=jgi.p|Trimin1|354479|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1288bp|location=Sequence derived from alignment at Contig_253:106330..108208+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAATAGCGGCAGTAGCACTCACAGCCGCGGAGGCCTGGCGGAAGA
GCTGGCAGAGCCAGTGGATGTAGATGCCGAGGCTTACAGGCTCGGCATGC
GGCACAACTCGGAGAAGATCCTGAAGGCTTCTCCTGCTGCCGCCAAGAAG
TTGTACGGCGATGACTCTGAGGCAGCCATCGGCGAGCCGACAGGCAGCGC
TGCTGCTGATGTCGCAGCGCCACAGGAGCTGGAGCGGCTGGAGGCTGATC
AGGAGGCAGAAGAGAGCGAGTATAAAGCCAAAGGCATCGTTGGCAAGGGC
TGGGGAAAAGGCTTCTTTGGCGCAGGCAGTCAGAAGACCAAGAAGCGCCC
GCCGCAGCAACAGCAGCAGCAGCCGATGCCGGCCCCTCAGCAGCAGCCAA
TAGAGGATGCTGGCGCCGCTGCCGCTATCTTCAGAGAGCGGATCAGTGAC
GGGGACCACACGCCATCGCAAGATGATGCGAATGACGCGATAAATCCAGC
AGCAGTGCTAGCAGGGGCAGCGGCAGCAGCAGCGGCAGCGCCACAGGAGA
CTGCGGCTTCAGAGCCTGCTGCGCCGCCAGCATCCGCTGCAGCAGCAGCG
CACACAGCAGATTCTGCTGCGGACGCGCCGCCGCCGCCGCCAGCGCGCGC
CGCGCACGGCGGCCGCGAGCGCAAGTCCGTGAGCTTCGACCCCGTCGTGC
GCGAGCGCGAGATACCGGCGCGCGCGCCGCGGCCGCAGTCGGACGCCGTC
AACGACATGCTGCGCATGTTCTCGGAGGCGGTGGCGGAGACGGCGGAGCC
GCTGCTGGAGGAGACGGAGCTGCCGCCGGACGTGGCGTCGCCGTTCGGCG
GCATGGACGCAGCGGCGCTCAGGGCGTTCCGCGACAGGGTGTACGAGAGC
GGGGAGGGGGGGTGGCGGGGCCAACGGAGGGGGGCGCGGGGGGAGGGGGG
CTGGGGGCGGGGGCAGGGGCAGCCGATGCAGCGGCAGCAGCAGCAGCAGC
AGTTGCAGCAGCAGCAGCAGCAGCCGCAGGCGGCGCCGCGCATGTCCAAG
TTCAAGTTGCGGCGGCTTGGCCTGGACCCGGATGCTGCCGTGTGAGGTTG
CGATGCGCAGGGAGTAAATTGTTGCTGCGCGAGCTGCAGTGCTGGCGTCA
CAGCGCGCAGTCATGCCAAGCGTGCAGTCATGCCAAATAAGTGCTCTAAG
AGCTCTTTGACAAGCTGCGGCGGCGTGGCTGCCCCACCACCACGTGATGC
TGGCGGCAGCAGTAAACATTGTGCCAGAGAGCACAGGG
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protein sequence of jgi.p|Trimin1|354479

>Trimin1|354479|estExt_Genemark1.C_Ctg_2530019 ID=Trimin1|354479|estExt_Genemark1.C_Ctg_2530019|Name=jgi.p|Trimin1|354479|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=365bp
MSNSGSSTHSRGGLAEELAEPVDVDAEAYRLGMRHNSEKILKASPAAAKK
LYGDDSEAAIGEPTGSAAADVAAPQELERLEADQEAEESEYKAKGIVGKG
WGKGFFGAGSQKTKKRPPQQQQQQPMPAPQQQPIEDAGAAAAIFRERISD
GDHTPSQDDANDAINPAAVLAGAAAAAAAAPQETAASEPAAPPASAAAAA
HTADSAADAPPPPPARAAHGGRERKSVSFDPVVREREIPARAPRPQSDAV
NDMLRMFSEAVAETAEPLLEETELPPDVASPFGGMDAAALRAFRDRVYES
GEGGWRGQRRGARGEGGWGRGQGQPMQRQQQQQQLQQQQQQPQAAPRMSK
FKLRRLGLDPDAAV*
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mRNA from alignment at Contig_253:106330..108208+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17503 ID=mRNA_17503|Name=jgi.p|Trimin1|354479|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1879bp|location=Sequence derived from alignment at Contig_253:106330..108208+ (Tribonema minus UTEX_B_3156 )
ATGTCGAATAGCGGCAGTAGCACTCACAGCCGCGGAGGCCTGGCGGAAGA
GCTGGCAGAGCCAGTGGATGTAGATGCCGAGGCTTACAGGCTCGGCATGC
GGCACAACTCGGAGTCTGGCTCTGCCATACTGGAAATCAGAGAGTGGATT
GATGATGCTGGTGCAGAAATCAAGTCCGAAATAGTGGATCTAGGAAGATC
CTGAAGGCTTCTCCTGCTGCCGCCAAGAAGTTGTACGGCGATGACTCTGA
GGCAGCCATCGGCGAGCCGACAGGCAGCGCTGCTGCTGATGTCGCAGCGC
CACAGGTCGGAGAACCTGCGGCAGGCGCAGGCGCACCGGAAGACTCGACA
CACGCACGGCGGCAGCCACCGCTTGATGCCGATGGCGAGGCTGCTCTGAC
CGCCCGCCTGGAGGAGCTGGAGCGGCTGGAGGCTGATCAGGAGGCAGAAG
AGAGCGAGTATAAAGCCAAAGGCATCGTTGGCAAGGGCTGGGGAAAAGGC
TTCTTTGGCGCAGGCAGTCAGAAGACCAAGAAGCGCCCGCCGCAGCAACA
GCAGCAGCAGCCGATGCCGGCCCCTCAGCAGCAGCCAATAGAGGATGCTG
GCGCCGCTGCCGCTATCTTCAGAGAGCGGATCAGTGACGGGGACCACACG
CCATCGCAAGATGATGCGAATGACGCGATAAATCCAGCAGCAGTGCTAGC
AGGGGCAGCGGCAGCAGCAGCGGCAGCGGTAACGGCAGCAGCGGCGGCGG
CACCAACGGCAGCAGCATCAGCAAGCGAGCCAGCAGCGCCAGATGCGCCC
TTCACTGCACCATCAGCCGCGTCCGCTAAAGCACATGACCAGCAGTCGTC
TCCTGCGCCCGCAGCAGAAGCCAGCACTGCTGCCACTGCCAACACTGCCG
CTGGGAGCAGCAACACCCTTGCTGGCCCTGCACCGGCGTCACAACAGGCG
CTGTTAAAAACAGCGGTGCCAGCAAAAGCAGTTTCCAGTGGCTGGAACAA
GGGCTTCCTGCAGGGGTCCAGACGGAAAAACAAACGGGCCGCGCAGCCCG
TGGCTCCCCCACACCCTCTGCTTCCGCACAGCCACAGGAGACTGCGGCTT
CAGAGCCTGCTGCGCCGCCAGCATCCGCTGCAGCAGCAGCGCACACAGCA
GATTCTGCTGCGGACGCGCCGCCGCCGCCGCCAGCGCGCGCCGCGCACGG
CGGCCGCGAGCGCAAGTCCGTGAGCTTCGACCCCGTCGTGCGCGAGCGCG
AGATACCGGCGCGCGCGCCGCGGCCGCAGTCGGACGCCGTCAACGACATG
CTGCGCATGTTCTCGGAGGCGGTGGCGGAGACGGCGGAGCCGCTGCTGGA
GGAGACGGAGCTGCCGCCGGACGTGGCGTCGCCGTTCGGCGGCATGGACG
CAGCGGCGCTCAGGGCGTTCCGCGACAGGGTGTACGAGAGCGGGGAGGGG
GGGTGGCGGGGCCAACGGAGGGGGGCGCGGGGGGAGGGGGGCTGGGGGCG
GGGGCAGGGGCAGGTGAGGGAAGTGTGGCATTGGCGGAGCAGCAGGCTGG
TGGTGTCGCGCAGCCGATGCAGCGGCAGCAGCAGCAGCAGCAGTTGCAGC
AGCAGCAGCAGCAGCCGCAGGCGGCGCCGCGCATGTCCAAGTTCAAGTTG
CGGCGGCTTGGCCTGGACCCGGATGCTGCCGTGTGAGGTTGCGATGCGCA
GGGAGTAAATTGTTGCTGCGCGAGCTGCAGTGCTGGCGTCACAGCGCGCA
GTCATGCCAAGCGTGCAGTCATGCCAAATAAGTGCTCTAAGAGCTCTTTG
ACAAGCTGCGGCGGCGTGGCTGCCCCACCACCACGTGATGCTGGCGGCAG
CAGTAAACATTGTGCCAGAGAGCACAGGG
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Coding sequence (CDS) from alignment at Contig_253:106330..108208+

>mRNA_17503 ID=mRNA_17503|Name=jgi.p|Trimin1|354479|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1095bp|location=Sequence derived from alignment at Contig_253:106330..108208+ (Tribonema minus UTEX_B_3156 )
ATGTCGAATAGCGGCAGTAGCACTCACAGCCGCGGAGGCCTGGCGGAAGA
GCTGGCAGAGCCAGTGGATGTAGATGCCGAGGCTTACAGGCTCGGCATGC
GGCACAACTCGGAGAAGATCCTGAAGGCTTCTCCTGCTGCCGCCAAGAAG
TTGTACGGCGATGACTCTGAGGCAGCCATCGGCGAGCCGACAGGCAGCGC
TGCTGCTGATGTCGCAGCGCCACAGGAGCTGGAGCGGCTGGAGGCTGATC
AGGAGGCAGAAGAGAGCGAGTATAAAGCCAAAGGCATCGTTGGCAAGGGC
TGGGGAAAAGGCTTCTTTGGCGCAGGCAGTCAGAAGACCAAGAAGCGCCC
GCCGCAGCAACAGCAGCAGCAGCCGATGCCGGCCCCTCAGCAGCAGCCAA
TAGAGGATGCTGGCGCCGCTGCCGCTATCTTCAGAGAGCGGATCAGTGAC
GGGGACCACACGCCATCGCAAGATGATGCGAATGACGCGATAAATCCAGC
AGCAGTGCTAGCAGGGGCAGCGGCAGCAGCAGCGGCAGCGCCACAGGAGA
CTGCGGCTTCAGAGCCTGCTGCGCCGCCAGCATCCGCTGCAGCAGCAGCG
CACACAGCAGATTCTGCTGCGGACGCGCCGCCGCCGCCGCCAGCGCGCGC
CGCGCACGGCGGCCGCGAGCGCAAGTCCGTGAGCTTCGACCCCGTCGTGC
GCGAGCGCGAGATACCGGCGCGCGCGCCGCGGCCGCAGTCGGACGCCGTC
AACGACATGCTGCGCATGTTCTCGGAGGCGGTGGCGGAGACGGCGGAGCC
GCTGCTGGAGGAGACGGAGCTGCCGCCGGACGTGGCGTCGCCGTTCGGCG
GCATGGACGCAGCGGCGCTCAGGGCGTTCCGCGACAGGGTGTACGAGAGC
GGGGAGGGGGGGTGGCGGGGCCAACGGAGGGGGGCGCGGGGGGAGGGGGG
CTGGGGGCGGGGGCAGGGGCAGCCGATGCAGCGGCAGCAGCAGCAGCAGC
AGTTGCAGCAGCAGCAGCAGCAGCCGCAGGCGGCGCCGCGCATGTCCAAG
TTCAAGTTGCGGCGGCTTGGCCTGGACCCGGATGCTGCCGTGTGA
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