mRNA_17486 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|143397
Unique NamemRNA_17486
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Match: A0A835YZI8_9STRA (Coiled-coil domain-containing protein 55-domain containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI8_9STRA)

HSP 1 Score: 446 bits (1147), Expect = 1.310e-157
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1
Query:    1 MKRYGLLGNAKTLKAQSVAAKTAKAPRKAPARGPAVAAFGDDSDSDGGAGAEDPTSRAAVNRRLAAEQAERARRMEKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVANATSAFTAGSRRHAAAAAFKVKAD 747
            MKRYGLLGNAKTLKAQSVAAKTAKAPRKAPARGPAVAAFGDDSDSDGGAGAEDPTSRAAVNRRLAAEQAERARRMEKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVANATSAFTAGSRRHAAAAAFKVKAD
Sbjct:    1 MKRYGLLGNAKTLKAQSVAAKTAKAPRKAPARGPAVAAFGDDSDSDGGAGAEDPTSRAAVNRRLAAEQAERARRMEKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVANATSAFTAGSRRHAAAAAFKVKAD 249          
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Match: D7G2R5_ECTSI (DUF2040 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R5_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 7.240e-52
Identity = 127/249 (51.00%), Postives = 160/249 (64.26%), Query Frame = 1
Query:    7 RYGLLGNAKTLKAQSVAAKTAK----------APRKAPARGPAVAAFGDDSDSDGGAGAEDPTSRAAVNRRLAAEQAERARRMEKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVA-NATSAFTAGSRRHAA 720
            ++GL+G A +LK  S +A  A           APR+ PA   +V     D + +   G  D +   AVN+RLAA  A++ ++ +K    A+  DPSVFDYD VYD + + R+ K AAA  AR  +K    QP+YIGNLL+QAK+R VE DR++DRKL KERE  DK  G A MKFVTSAYK KLMEQKKWE+ Q+ E ERE + +       GM  FYSNL+TKNIAMGGDV  +A SAFTAGS+RHAA
Sbjct:    7 KFGLIGTASSLKKGSSSAAGAAGRGRPIGSKPAPRRRPAGSTSVFDANSDDEEEDSKG--DLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKR---QPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKT---GMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAA 247          
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Match: A0A8K1FKC2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKC2_PYTOL)

HSP 1 Score: 131 bits (330), Expect = 4.510e-33
Identity = 79/161 (49.07%), Postives = 110/161 (68.32%), Query Frame = 1
Query:  223 MEKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGG-GMTAFYSNLLTKNIAMGGDVANATSAFTAG 702
            ++++  +A+ +DPSVFDYDGVYDE+   R DK +   A R   +T++ Q +YIG L+E+AK+R +E DRV +R+L KERE  D ++G  E K ++++YK KL E K+W+    R   +EA AE   KRG   M  FYSNLLTKNIAMGGD +N+ SA+T G
Sbjct:   78 VDRLHEKALAEDPSVFDYDGVYDEIQSSRQDKVSRRKAQR---ETEKAQSKYIGTLMEKAKVREIELDRVRERRLLKEREADDAQYGDKE-KLISASYKRKLQEMKRWDEEDARLDAKEA-AEDVTKRGNEAMVGFYSNLLTKNIAMGGDTSNSHSAYTVG 233          
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Match: W4GKX4_9STRA (DUF2040 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKX4_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.940e-32
Identity = 84/159 (52.83%), Postives = 104/159 (65.41%), Query Frame = 1
Query:  226 EKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVANATSAFTAG 702
            E+VA +A+ DDP+VFDYDG+YD +   R  K   A    G  ++K     YIG L+E+AK+R VE DR+ +R+L KEREE D   G  E KFVT++YK KLME K+WE    R A  EA A    KR  GM  FY+NLLT NIAMGGDV+ ATSA+T G
Sbjct:   65 ERVAHEALADDPNVFDYDGIYDSMRVERQ-KLKEAKKVHGAPQSK-----YIGALMEKAKIREVEHDRIRERRLLKEREEDDALHGEKE-KFVTASYKRKLMESKRWEQEDARLAAIEA-ANDVTKREHGMAGFYANLLTNNIAMGGDVSKATSAYTTG 215          
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Match: A0A024UUN6_9STRA (DUF2040 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUN6_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.690e-32
Identity = 83/159 (52.20%), Postives = 103/159 (64.78%), Query Frame = 1
Query:  226 EKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVANATSAFTAG 702
            E+VA +A+ DDP+VFDYDG YD +   R  K   A    G  ++K     YIG L+E+AK+R VE DR+ +R+L KEREE D   G  E KF+T++YK KLME K+WE    R A  EA A    KR  GM  FY+NLLT NIAMGGDV+ ATSA+T G
Sbjct:   63 ERVAHEALADDPNVFDYDGAYDSIQAERQ-KLKEAKKVHGAPQSK-----YIGALMEKAKIREVEHDRIRERRLLKEREEDDALHGDKE-KFITASYKRKLMESKRWEQEDARLAAIEA-ANDVTKREHGMAGFYANLLTNNIAMGGDVSKATSAYTTG 213          
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Match: A0A7S1XVS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVS8_9STRA)

HSP 1 Score: 126 bits (317), Expect = 7.770e-32
Identity = 79/158 (50.00%), Postives = 105/158 (66.46%), Query Frame = 1
Query:  244 AVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAA--EMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVANATSAFTAGSRR 711
            A+ +D SVFDYDGVYD ++  RD  AAA A+ R   K+K     Y  NLL+QA++R ++ DR+Y+RKL +E  E  +  G    E KFV +AY+ +L E++ WE A+  EAEREA+ +       GM  FYSNLLTKNIAMGGDV NA S+FT GS++
Sbjct:    4 ALTEDASVFDYDGVYDSMTSARDSAAAAQASERKERKSK-----YTENLLKQAQMRKLQSDRIYERKLRREAAEVAEMHGGVKDEDKFVGAAYRKQLEEREAWEKAEREEAEREARNDVTKT---GMMGFYSNLLTKNIAMGGDVKNAQSSFTVGSKQ 153          
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Match: A0A1V9ZKX0_9STRA (DUF2040 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKX0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.920e-30
Identity = 79/159 (49.69%), Postives = 100/159 (62.89%), Query Frame = 1
Query:  226 EKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVANATSAFTAG 702
            E+   +A+  DP+VFDYDGVYD +   R  K  AA    G  ++K     YI  LLE+AK+R +E DR+ +R+L KEREE DK  G  E KF+TS+YK KLME K+WE    R AE EA  +   +   GM  FY+NLLT NIAMGG +  ATSA+T G
Sbjct:   61 ERAVQEALASDPNVFDYDGVYDSMQAERV-KQKAAKKVEGVPQSK-----YINVLLEKAKIREIEHDRIRERRLLKEREEDDKLHGDTE-KFITSSYKRKLMEAKRWEEEDARLAEIEAAQDVTKRGELGMAGFYANLLTNNIAMGGTIEKATSAYTTG 212          
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Match: A0A5D6XJ06_9STRA (DUF2040 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJ06_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.080e-29
Identity = 88/194 (45.36%), Postives = 124/194 (63.92%), Query Frame = 1
Query:  130 DSDGGAGAEDPTSRAAVNRRLAAEQAE--RARRMEKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEAD--MKRGG-GMTAFYSNLLTKNIAMGGDVANATSAFT 696
            D+D G+ A    S A + RR+AA+ A   RA  +EK   QA+  D +VFDYDGVYDE++  R D AA   A R  +K    QP+YIG+LL++AK+R +E +R+ +R+L  ER   D  +G  E K V+++YK KL EQ++W+   + +A  +A  +A+   KRG   M  FY+NLL KN+AMGG  ANATSA+T
Sbjct:   45 DADAGSAAP-AASEAELRRRVAADAARSVRASEVEKAHSQALAQDATVFDYDGVYDELTSERRDSAARRRALREAEKK---QPKYIGSLLQKAKIREIENERIRERRLLNERRAEDALYGDKE-KLVSASYKRKLQEQRQWD---DEDARLDALEDAEDVTKRGELAMAGFYANLLHKNLAMGGSTANATSAYT 230          
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Match: A0A485KZJ8_9STRA (Aste57867_13778 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZJ8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.750e-29
Identity = 79/159 (49.69%), Postives = 101/159 (63.52%), Query Frame = 1
Query:  226 EKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVANATSAFTAG 702
            E+ A  A+ DDP+VFDYDG+YD +   R  K   A   +G  ++K     YIG L+E+AK+R +E DR+ +R+L KER E D   G  E KFVT++YK KLME K+WE    R A  EA A    K+  GM  FY+NLLT NIAMGGDV+ A SA+T G
Sbjct:   65 ERAAQDALADDPNVFDYDGMYDNMQAERQ-KQKEAKKVQGVPQSK-----YIGALMEKAKIREIEHDRIRERRLLKERAEDDALHGDKE-KFVTASYKRKLMESKRWEQEDARLAAIEA-ANDVTKKEHGMAGFYANLLTSNIAMGGDVSKAVSAYTTG 215          
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Match: T0QM91_SAPDV (DUF2040 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QM91_SAPDV)

HSP 1 Score: 119 bits (298), Expect = 1.250e-28
Identity = 81/160 (50.62%), Postives = 102/160 (63.75%), Query Frame = 1
Query:  226 EKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGG-GMTAFYSNLLTKNIAMGGDVANATSAFTAG 702
            ++   +A+  DP+ FDYDGVYD +   R  K  AA   +G  ++K     YI  LLE+AK+R +E DR+ +R+L KEREE DK  G  E KF+TS+YK KLME K+WE    R A  E  A+   KRG  GM  FY+NLLT NIAMGGDV  ATSA+T G
Sbjct:   60 DRAVQEALASDPNAFDYDGVYDSMQAERV-KQKAAKKVQGVPQSK-----YINVLLEKAKVREIEHDRIRERRLLKEREEDDKIHGDKE-KFITSSYKRKLMEAKRWEEEDARLAAIE-DAQDVTKRGELGMAGFYANLLTNNIAMGGDVEKATSAYTTG 211          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143397 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZI8_9STRA1.310e-157100.00Coiled-coil domain-containing protein 55-domain co... [more]
D7G2R5_ECTSI7.240e-5251.00DUF2040 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A8K1FKC2_PYTOL4.510e-3349.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4GKX4_9STRA2.940e-3252.83DUF2040 domain-containing protein n=5 Tax=Aphanomy... [more]
A0A024UUN6_9STRA4.690e-3252.20DUF2040 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A7S1XVS8_9STRA7.770e-3250.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1V9ZKX0_9STRA1.920e-3049.69DUF2040 domain-containing protein n=1 Tax=Achlya h... [more]
A0A5D6XJ06_9STRA2.080e-2945.36DUF2040 domain-containing protein n=1 Tax=Pythium ... [more]
A0A485KZJ8_9STRA3.750e-2949.69Aste57867_13778 protein n=1 Tax=Aphanomyces stella... [more]
T0QM91_SAPDV1.250e-2850.63DUF2040 domain-containing protein n=1 Tax=Saproleg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_253contigContig_253:12483..13229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|143397|gw1.253.13.1
BRITEko00000,ko01000,ko01002,ko03036,ko03041,ko04131
KEGG koko:K07752,ko:K11414,ko:K13206,ko:K14437,ko:K20526
EC3.4.17.22,3.6.4.12
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009791,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0040039,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0048856,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1990904
Preferred nameNSRP1
DescriptionmRNA binding
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2117@1|root,KOG2117@2759|Eukaryota
Evalue1.19e-52
Seed ortholog2880.D7G2R5
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionDomain of unknown function DUF2040
Ec32 orthologEc-11_003220.1
TranscriptId143719
TrackFilteredModels1
ProteinId143397
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143397gene_17486Tribonema minus UTEX_B_3156 geneContig_253 12483..13229 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17486_1exon_17486_1Tribonema minus UTEX_B_3156 exonContig_253 12483..13229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17486CDS_17486Tribonema minus UTEX_B_3156 CDSContig_253 12483..13229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143397Trimin1|143397|gw1.253.13.1Tribonema minus UTEX_B_3156 polypeptideContig_253 12483..13229 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17486 ID=mRNA_17486|Name=jgi.p|Trimin1|143397|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=747bp|location=Sequence derived from alignment at Contig_253:12483..13229+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGCTACGGTCTGCTCGGCAACGCCAAAACCCTTAAAGCCCAGTC
AGTCGCTGCCAAAACCGCAAAGGCGCCGCGTAAAGCCCCTGCTCGGGGGC
CGGCAGTGGCAGCCTTCGGCGATGACTCCGATTCCGATGGAGGTGCAGGG
GCAGAAGATCCCACCAGCAGGGCCGCAGTGAACAGGCGTCTCGCTGCGGA
GCAGGCGGAGCGCGCACGGCGAATGGAGAAGGTGGCGGTGCAGGCCGTCA
TGGATGACCCCAGCGTGTTTGACTACGACGGGGTGTACGACGAGGTGTCG
AAGGGCCGGGACGACAAGGCCGCCGCAGCAGCAGCCGCAAGGGGTAATGA
CAAGACCAAGCGGCTGCAGCCGCGCTACATCGGCAACCTGCTGGAGCAGG
CGAAGCTGCGCACCGTCGAGCAGGACCGCGTCTACGACCGCAAGCTCGCC
AAGGAGCGGGAGGAGGGGGACAAGGAGTTCGGCGCGGCGGAGATGAAGTT
TGTCACGAGCGCGTACAAGGCCAAGCTCATGGAGCAGAAGAAGTGGGAGG
TCGCGCAGGAGCGCGAGGCGGAGCGCGAGGCGCAGGCGGAGGCGGACATG
AAGCGCGGCGGCGGCATGACGGCCTTCTACTCCAACCTGCTCACCAAGAA
CATTGCCATGGGCGGCGACGTCGCCAACGCCACCAGCGCGTTCACCGCGG
GGTCGCGCAGGCACGCCGCTGCCGCCGCCTTCAAGGTCAAGGCGGAC
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protein sequence of jgi.p|Trimin1|143397

>Trimin1|143397|gw1.253.13.1 ID=Trimin1|143397|gw1.253.13.1|Name=jgi.p|Trimin1|143397|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp
MKRYGLLGNAKTLKAQSVAAKTAKAPRKAPARGPAVAAFGDDSDSDGGAG
AEDPTSRAAVNRRLAAEQAERARRMEKVAVQAVMDDPSVFDYDGVYDEVS
KGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLA
KEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADM
KRGGGMTAFYSNLLTKNIAMGGDVANATSAFTAGSRRHAAAAAFKVKAD
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mRNA from alignment at Contig_253:12483..13229+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17486 ID=mRNA_17486|Name=jgi.p|Trimin1|143397|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=747bp|location=Sequence derived from alignment at Contig_253:12483..13229+ (Tribonema minus UTEX_B_3156 )
ATGAAGCGCTACGGTCTGCTCGGCAACGCCAAAACCCTTAAAGCCCAGTC AGTCGCTGCCAAAACCGCAAAGGCGCCGCGTAAAGCCCCTGCTCGGGGGC CGGCAGTGGCAGCCTTCGGCGATGACTCCGATTCCGATGGAGGTGCAGGG GCAGAAGATCCCACCAGCAGGGCCGCAGTGAACAGGCGTCTCGCTGCGGA GCAGGCGGAGCGCGCACGGCGAATGGAGAAGGTGGCGGTGCAGGCCGTCA TGGATGACCCCAGCGTGTTTGACTACGACGGGGTGTACGACGAGGTGTCG AAGGGCCGGGACGACAAGGCCGCCGCAGCAGCAGCCGCAAGGGGTAATGA CAAGACCAAGCGGCTGCAGCCGCGCTACATCGGCAACCTGCTGGAGCAGG CGAAGCTGCGCACCGTCGAGCAGGACCGCGTCTACGACCGCAAGCTCGCC AAGGAGCGGGAGGAGGGGGACAAGGAGTTCGGCGCGGCGGAGATGAAGTT TGTCACGAGCGCGTACAAGGCCAAGCTCATGGAGCAGAAGAAGTGGGAGG TCGCGCAGGAGCGCGAGGCGGAGCGCGAGGCGCAGGCGGAGGCGGACATG AAGCGCGGCGGCGGCATGACGGCCTTCTACTCCAACCTGCTCACCAAGAA CATTGCCATGGGCGGCGACGTCGCCAACGCCACCAGCGCGTTCACCGCGG GGTCGCGCAGGCACGCCGCTGCCGCCGCCTTCAAGGTCAAGGCGGAC
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Coding sequence (CDS) from alignment at Contig_253:12483..13229+

>mRNA_17486 ID=mRNA_17486|Name=jgi.p|Trimin1|143397|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_253:12483..13229+ (Tribonema minus UTEX_B_3156 )
ATGAAGCGCTACGGTCTGCTCGGCAACGCCAAAACCCTTAAAGCCCAGTC
AGTCGCTGCCAAAACCGCAAAGGCGCCGCGTAAAGCCCCTGCTCGGGGGC
CGGCAGTGGCAGCCTTCGGCGATGACTCCGATTCCGATGGAGGTGCAGGG
GCAGAAGATCCCACCAGCAGGGCCGCAGTGAACAGGCGTCTCGCTGCGGA
GCAGGCGGAGCGCGCACGGCGAATGGAGAAGGTGGCGGTGCAGGCCGTCA
TGGATGACCCCAGCGTGTTTGACTACGACGGGGTGTACGACGAGGTGTCG
AAGGGCCGGGACGACAAGGCCGCCGCAGCAGCAGCCGCAAGGGGTAATGA
CAAGACCAAGCGGCTGCAGCCGCGCTACATCGGCAACCTGCTGGAGCAGG
CGAAGCTGCGCACCGTCGAGCAGGACCGCGTCTACGACCGCAAGCTCGCC
AAGGAGCGGGAGGAGGGGGACAAGGAGTTCGGCGCGGCGGAGATGAAGTT
TGTCACGAGCGCGTACAAGGCCAAGCTCATGGAGCAGAAGAAGTGGGAGG
TCGCGCAGGAGCGCGAGGCGGAGCGCGAGGCGCAGGCGGAGGCGGACATG
AAGCGCGGCGGCGGCATGACGGCCTTCTACTCCAACCTGCTCACCAAGAA
CATTGCCATGGGCGGCGACGTCGCCAACGCCACCAGCGCGTTCACCGCGG
GGTCGCGCAGGCACGCCGCTGCCGCCGCCTTCAAGGTCAAGGCGGAC
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